Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000412.1

Orthogroup ID

OG0004508

Physical Location & Seq

Genomic Coordinates Reverse (-)

112127 .. 114540

Gene Structure 2414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000412.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggaaacaggcatatatggtggtgccgggtctgtctcctttgacgagtttgaccagttgacatctgttcatgttaattccacggatgagctatttcttgctagtggatactcaagagacgttgccttatatgacattagtagtggaaagtgcttacaggtgtttactaatatgcatcgggagcatattaatgcaataaagtttgcaaaccattccccatctgttttcgccacttcttcatttgatcaggatgtcaagatgtgggacctaagacagaaaccaataagcccttgctattcctcttcaagttctaggggtaatgtgatggtttgcttttctcctgatgatcactatcttcttgtctcagctgttgataacgaggttaggcaacttctcgcagttgatgggagacttcacttgaattttgagatagcctctacaggaagttctcagaactacactcgatcctattacatgaatggaagagattatatcatccgtgggagttgtgatgaacatgttgtctgcatatgctgtgctcaaacagggaggcgcctgagggatatatctttggagggaggaggaagatctaggagttctatgtttgtgcaatctttgaggggtgatccttccagagaattcaacatgagtatcttggcagcccatatgcgtccaagatcgaagtctgaaattatcaaggtcaatgtgctagcatctagtgattatgccaaggaacactttgatggtcagcaggcttgcccaaccaatagtatgggaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

260

Amino Acids

28.83

Weight (kDa)

6.13

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34280
fragaria_vesca	FvH4_2g04670 FvH4_2g04670
malus_domestica	MD05G1093800.v1.1
prunus_persica	Prupe.8G138700_v2.0.a1 Prupe.8G138700_v2.0.a1
pyrus_communis	pycom05g09290
rosa_chinensis	RchiOBHm_Chr6g0254291 RchiOBHm_Chr6g0254331 RchiOBHm_Chr6g0254371
rosa_laevigata	RLG00000014132 RLG00000014922 RLG00000014929
rosa_multiflora	Rmu_sc0012713.1_g000001 Rmu_sc0012713.1_g000002 Rmu_sc0027609.1_g000001 Rmu_ssc0000412.1_g000017
rosa_roxburghii	Rroxscaffold_7G00210950
rosa_rugosa	Rorug05G0551700 Rorug05G0551800 Rorug05G0551800
rosa_samantha	Rh6AG068100 Rh6AG068600 Rh6BG061000 Rh6BG061300 Rh6CG060800 Rh6CG061200 Rh6DG057900 Rh6DG058100 Rh6DG058500
rosa_wichuraiana	Rw6G005970 Rw6G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	23, 552
AclWI	GGATC	2 cut(s)	459, 620
AcsI	RAATTY	2 cut(s)	421, 638
AcyI	GRCGYC	1 cut(s)	553
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	3 cut(s)	306, 421, 643
AluBI	AGCT	2 cut(s)	91, 368
AluI	AGCT	2 cut(s)	91, 368
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	4 cut(s)	40, 111, 367, 403
AlwI	GGATC	2 cut(s)	459, 620
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	2 cut(s)	421, 638
AseI	ATTAAT	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	635
AsuNHI	GCTAGC	1 cut(s)	709
AvaII	GGWCC	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	557
BaeI	ACNNNNGTAYC	2 cut(s)	634, 667
BanI	GGYRCC	2 cut(s)	23, 552
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	671
BccI	CCATC	4 cut(s)	226, 319, 398, 737
BciVI	GTATCC	1 cut(s)	101
BclI	TGATCA	2 cut(s)	244, 346
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	4 cut(s)	40, 111, 367, 403
BfaI	CTAG	5 cut(s)	102, 312, 591, 710, 717
BfmI	CTRYAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	556
BfuI	GTATCC	1 cut(s)	101
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	1 cut(s)	660
BlsI	GCNGC	1 cut(s)	661
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	25, 266, 554
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	2 cut(s)	184, 722
BmtI	GCTAGC	1 cut(s)	713
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	553
BsaJI	CCNNGG	3 cut(s)	81, 499, 729
Bse1I	ACTGG	1 cut(s)	55
Bse21I	CCTNAGG	1 cut(s)	557
Bse8I	GATNNNNATC	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	81, 499, 729
BseGI	GGATG	3 cut(s)	91, 256, 495
BseJI	GATNNNNATC	1 cut(s)	351
BseMII	CTCAG	3 cut(s)	378, 464, 548
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	594
BseXI	GCAGC	1 cut(s)	671
BshNI	GGYRCC	2 cut(s)	23, 552
BsiHKAI	GWGCWC	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	278
BsmAI	GTCTC	4 cut(s)	40, 111, 367, 403
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	6 cut(s)	244, 346, 464, 587, 625, 677
BspCNI	CTCAG	3 cut(s)	377, 463, 549
BspLI	GGNNCC	3 cut(s)	25, 266, 554
BspOI	GCTAGC	1 cut(s)	713
BspPI	GGATC	2 cut(s)	459, 620
BspT107I	GGYRCC	2 cut(s)	23, 552
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	81, 499, 729
BssMI	GATC	6 cut(s)	244, 346, 464, 587, 625, 677
BssNI	GRCGYC	1 cut(s)	553
BssT1I	CCWWGG	1 cut(s)	729
Bst6I	CTCTTC	2 cut(s)	307, 478
BstACI	GRCGYC	1 cut(s)	553
BstC8I	GCNNGC	3 cut(s)	711, 753, 757
BstDEI	CTNAG	4 cut(s)	269, 364, 450, 557
BstDSI	CCRYGG	2 cut(s)	81, 499
BstF5I	GGATG	3 cut(s)	91, 256, 495
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	6 cut(s)	247, 349, 467, 590, 628, 680
BstMAI	GTCTC	4 cut(s)	40, 111, 367, 403
BstMBI	GATC	6 cut(s)	244, 346, 464, 587, 625, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	671
BstX2I	RGATCY	1 cut(s)	587
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	587
Bsu36I	CCTNAGG	1 cut(s)	557
BsuI	GTATCC	1 cut(s)	101
BtgI	CCRYGG	2 cut(s)	81, 499
BtsCI	GGATG	3 cut(s)	91, 256, 495
Cac8I	GCNNGC	3 cut(s)	711, 753, 757
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	659
CviAII	CATG	4 cut(s)	71, 475, 518, 646
CviJI	RGCY	6 cut(s)	91, 288, 368, 434, 662, 755
CviKI_1	RGCY	6 cut(s)	91, 288, 368, 434, 662, 755
DdeI	CTNAG	4 cut(s)	269, 364, 450, 557
DinI	GGCGCC	1 cut(s)	554
DpnI	GATC	6 cut(s)	246, 348, 466, 589, 627, 679
DpnII	GATC	6 cut(s)	244, 346, 464, 587, 625, 677
Eam1104I	CTCTTC	2 cut(s)	307, 478
EarI	CTCTTC	2 cut(s)	307, 478
Eco130I	CCWWGG	1 cut(s)	729
Eco47I	GGWCC	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	729
EcoT22I	ATGCAT	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	554
EheI	GGCGCC	1 cut(s)	554
ErhI	CCWWGG	1 cut(s)	729
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	4 cut(s)	74, 478, 521, 649
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	4 cut(s)	70, 474, 517, 645
FauNDI	CATATG	2 cut(s)	530, 666
FbaI	TGATCA	2 cut(s)	244, 346
Fnu4HI	GCNGC	1 cut(s)	660
FokI	GGATG	3 cut(s)	98, 263, 482
Fsp4HI	GCNGC	1 cut(s)	660
FspBI	CTAG	5 cut(s)	102, 312, 591, 710, 717
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	556
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	1 cut(s)	659
HhaI	GCGC	1 cut(s)	555
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	4 cut(s)	74, 478, 521, 649
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	2 cut(s)	60, 165
Hpy188I	TCNGA	2 cut(s)	453, 688
Hpy188III	TCNNGA	6 cut(s)	114, 179, 248, 256, 341, 633
Hpy8I	GTNNAC	2 cut(s)	60, 165
HpyAV	CCTTC	1 cut(s)	639
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	5 cut(s)	175, 194, 206, 528, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	4 cut(s)	269, 364, 450, 557
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	4 cut(s)	74, 478, 521, 649
HspAI	GCGC	1 cut(s)	553
KasI	GGCGCC	1 cut(s)	552
Ksp22I	TGATCA	2 cut(s)	244, 346
Kzo9I	GATC	6 cut(s)	244, 346, 464, 587, 625, 677
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	1 cut(s)	671
LweI	GCATC	2 cut(s)	184, 722
MaeI	CTAG	5 cut(s)	102, 312, 591, 710, 717
MaeII	ACGT	1 cut(s)	120
MalI	GATC	6 cut(s)	246, 348, 466, 589, 627, 679
MboI	GATC	6 cut(s)	244, 346, 464, 587, 625, 677
MboII	GAAGA	5 cut(s)	228, 294, 347, 495, 597
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	4 cut(s)	76, 421, 638, 690
Mly113I	GGCGCC	1 cut(s)	553
Mph1103I	ATGCAT	1 cut(s)	177
MseI	TTAA	2 cut(s)	75, 189
MslI	CAYNNNNRTG	2 cut(s)	189, 741
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	181
NarI	GGCGCC	1 cut(s)	553
NciI	CCSGG	1 cut(s)	28
NdeI	CATATG	2 cut(s)	530, 666
NdeII	GATC	6 cut(s)	244, 346, 464, 587, 625, 677
NheI	GCTAGC	1 cut(s)	709
NlaIII	CATG	4 cut(s)	74, 478, 521, 649
NlaIV	GGNNCC	3 cut(s)	25, 266, 554
NsiI	ATGCAT	1 cut(s)	177
NspI	RCATGY	1 cut(s)	521
PciI	ACATGT	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	661
PluTI	GGCGCC	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	265
PscI	ACATGT	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	265
PspN4I	GGNNCC	3 cut(s)	25, 266, 554
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	368
RseI	CAYNNNNRTG	2 cut(s)	189, 741
SaqAI	TTAA	2 cut(s)	75, 189
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	6 cut(s)	244, 346, 464, 587, 625, 677
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	541
SetI	ASST	8 cut(s)	93, 123, 162, 270, 370, 384, 702, 781
SfaNI	GCATC	2 cut(s)	184, 722
SfcI	CTRYAG	1 cut(s)	438
SfoI	GGCGCC	1 cut(s)	554
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	189, 741
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	4 cut(s)	76, 421, 638, 690
SspDI	GGCGCC	1 cut(s)	552
SspMI	CTAG	5 cut(s)	102, 312, 591, 710, 717
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	729
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	463, 680
TasI	AATT	4 cut(s)	76, 421, 638, 690
Tru1I	TTAA	2 cut(s)	75, 189
Tru9I	TTAA	2 cut(s)	75, 189
TseI	GCWGC	1 cut(s)	659
TspDTI	ATGAA	4 cut(s)	59, 228, 491, 528
TspGWI	ACGGA	2 cut(s)	98, 488
VpaK11BI	GGWCC	1 cut(s)	265
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	2 cut(s)	421, 638
XceI	RCATGY	1 cut(s)	521
XspI	CTAG	5 cut(s)	102, 312, 591, 710, 717
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.