Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004508

Physical Location & Seq

Genomic Coordinates Forward (+)

9582413 .. 9589264

Gene Structure 6852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

ATGGCAATCGACATCGCAACCTTAGAAAAGAGGTACATTAATTCCTGCAGGAAGCACTGTGTTTCACCTAATGATGCAATTCTCTCTGTTCTGTTTAAGGCTGAGGTAAAAAAGTCTTGCAATGAGCTCTGTAGCCTGGAGATTTCATTGGACCATCTTAAGGATCCTGAATTCCCACCACTTCTTGATTTATGTATGGAACTTGATGCTTCTGAGGTTGAAGCAGTTGACATACGCAATGAATCATTGCATGTTTTGAATGGAAAATATGCGCTGTTGTTGATGCGTGCTATCAATCAAAAGCTTCGAGTTGTTGATCTCCAAGATTTGGCATTTGGAAAGGATTTTCTTGAGTTTATTCTCAGGGATCTTTCACAGAGAGGTTTGACATGCCAAGTTTTAAACTTGAGATCTTCACATTTTCGGAAGCTCAATATGATGGGAGAGTTCCTGCGGATACACACCCTCAACCTTGACTTTACTACTTCACTCACTAGTTTCCAGGAGGATTGTTTTTCTTGCATGCCCAATCTAATGTGCCTCTCTCTGTGCGAGACAAGAATTTTAAATCTCTGGACAACCATTGCTGCGCTTTCTAAACTCCCTTCTTTGGTTGAACTTCGGTTTCAGCATTGGTCATGCTGCAATGATGTTGGGCCTGATTCTGCATCATCTAGTGGGAAGTCACATCACAAAACTTATTCAAATCAGCGAAATAATGGTAGAGCATCATCCCTTAATATTGGGGAACTAACAGACCAGTACTCAAGCACAGAAGAGGTGCTCAGGAATATGTTTTTGCTTAATAATGTGGTTATAAATGATGATGAAAGTAGGGCTGAGGATTCAGATGATAGCGAACTAGACTTTTCAAGTCCCCTGCAAGAATATGGTTCTGTGGAGCGTTTGTCAAATAATCAAAATGAGGCAGAGCCTTTAGCTGGTCCCTTCTCAAAGTATATTGGAGACAATTCAGTGAAATATATTTCTTATCATGCTTCGCCAATATGTTTTGAGAAATATTATAGAGAGTACATGATAGCCTCATTACCTCGTTTGAGAATTTTAGATAACTTGCCAATTAGAAAGATTGATCAGGAAACTGCTAGGATGACATTTGCAGAATATTTTGAGCATGTACCATATCAAAGAAAGCCCAAGGAAAATGTCGTTAGTGTGTTACAAAAGCGTGAAATAAGATCAAGCCAAAATCATGTACAAAGTCCTGGGAAAAAAGTATCGAATCTCTATGGAAAGTCTCAATGCTTCTATACCAGGTCTCTTTCTGCTGCCAAAATGGGATCTTGTGTTTGGCCATTCTTGAACCCGCTTTCTTTTTCAGGCAGTACTCTGGTAGGTGAAAGTAAGAGCTTTCGTCCTAGGCAGTTTGAGTATCATCCATCCAACTCTAGCATTATGGTCTTTGGAACATTAGATGGTGAAATAATTGCAGTCAACCATGAGAATGGGAAAATTGTCAGTTATATCCCATCACTAGGAGCAATGAATAGTGTGCTGGGACTCTTTTGGCTCAAGAAGTATCCCTCTAAGGTATCTACTTACTTCATGGAATGCATATATGGTGGTGCCGGGTCTGTCTCCTTTGACGAGTTTGACCAGTTGACATCTGTTCATGTTAATTCCACGGATGAGCTATTTCTTGCTAGTGGATACTCAAGAGACGTTGCCTTATATGACATTAGTAGTGGAAAGCGCTTACAGGTGTTTACTAATATGCATCGGGAGCATATTAATGCAATAAAGTTTGCAAACCATTCCCCATCTGTTTTCGCCACTTCTTCATTTGATCAGGATATCAAGATGTGGGACCTAAGACAGAAACCAATAAGCCCTTGCTATTCCTCTTCAAGTTCTAGGGGTAATGTGATGGTTTGCTTTTCTCCTGATGATCACTATCTTCTTGTCTCAGCTGTTGATAACGAGGTTAGGCAACTTCTCGCAGTTGATGGGAGACTTCACTTGAATTTTGAGATAGCCTCTACAGGAAGTTCTCAGAACTACACTCGATCCTATTACATGAATGGAAGAGATTATATCATCAGTGGGAGTTGTGATGAACATGTTGTCTGCATATGCTGTGCTCAAACAGGGAGGCGCCTGAGGGATATATCTTTGGAGGAAGATCTAGGAGTTCTATGTTTGTGCAATCTTAGGGGTGATCCTTTCAGAGAATTCAACATGAGTATCTTGGCAGCCCATATGCGTCCAAGATTGAAGTCTGAAATTATCAAGGTCAATCTGCTAGCATCTAGTGATTATGCCAAGGAACACTTTGATGGTCAGCAGGCTTGCCCAACCAATAGTATGGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

778

Amino Acids

87.91

Weight (kDa)

6.02

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	4 - 373	1.5e-88	DWD hypersensitive to UV-B 1, N-terminal
WD40_CDC20-Fz	PF24807	538 - 650	5e-07	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	541 - 695	2e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	541 - 650	1.7e-08	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	541 - 721	1.3e-06	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	542 - 713	1.2e-16	WDR5 beta-propeller domain
WD40_Prp19	PF24814	542 - 648	7.1e-08	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	554 - 652	1e-07	WDR36/Utp21 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34280
fragaria_vesca	FvH4_2g04670 FvH4_2g04670
malus_domestica	MD05G1093800.v1.1
prunus_persica	Prupe.8G138700_v2.0.a1 Prupe.8G138700_v2.0.a1
pyrus_communis	pycom05g09290
rosa_chinensis	RchiOBHm_Chr6g0254291 RchiOBHm_Chr6g0254331 RchiOBHm_Chr6g0254371
rosa_laevigata	RLG00000014132 RLG00000014922 RLG00000014929
rosa_multiflora	Rmu_sc0012713.1_g000001 Rmu_sc0012713.1_g000002 Rmu_sc0027609.1_g000001 Rmu_ssc0000412.1_g000017
rosa_roxburghii	Rroxscaffold_7G00210950
rosa_rugosa	Rorug05G0551700 Rorug05G0551800 Rorug05G0551800
rosa_samantha	Rh6AG068100 Rh6AG068600 Rh6BG061000 Rh6BG061300 Rh6CG060800 Rh6CG061200 Rh6DG057900 Rh6DG058100 Rh6DG058500
rosa_wichuraiana	Rw6G005970 Rw6G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	818
AccB1I	GGYRCC	2 cut(s)	1586, 2115
AccB7I	CCANNNNNTGG	1 cut(s)	328
AciI	CCGC	2 cut(s)	454, 1328
AclWI	GGATC	6 cut(s)	158, 171, 375, 1309, 2022, 2174
AcoI	YGGCCR	1 cut(s)	1313
AcsI	RAATTY	5 cut(s)	170, 561, 1062, 1984, 2192
AcyI	GRCGYC	1 cut(s)	2116
AfaI	GTAC	6 cut(s)	35, 764, 1034, 1140, 1218, 1348
AfeI	AGCGCT	1 cut(s)	1715
AfiI	CCNNNNNNNGG	5 cut(s)	160, 328, 610, 941, 1496
AflII	CTTAAG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	2080
AhlI	ACTAGT	1 cut(s)	494
AjnI	CCWGG	4 cut(s)	135, 501, 1225, 1274
AluBI	AGCT	7 cut(s)	127, 304, 430, 941, 1371, 1654, 1931
AluI	AGCT	7 cut(s)	127, 304, 430, 941, 1371, 1654, 1931
Alw21I	GWGCWC	3 cut(s)	129, 786, 2104
Alw26I	GTCTC	8 cut(s)	548, 960, 1263, 1284, 1603, 1674, 1930, 1966
AlwI	GGATC	6 cut(s)	158, 171, 375, 1309, 2022, 2174
Aor51HI	AGCGCT	1 cut(s)	1715
AoxI	GGCC	2 cut(s)	656, 1313
ApeKI	GCWGC	4 cut(s)	587, 642, 1289, 2213
ApoI	RAATTY	5 cut(s)	170, 561, 1062, 1984, 2192
AseI	ATTAAT	2 cut(s)	39, 1752
AspA2I	CCTAGG	1 cut(s)	1379
AspLEI	GCGC	4 cut(s)	274, 592, 1716, 2118
AspS9I	GGNCC	4 cut(s)	151, 656, 944, 1828
AsuC2I	CCSGG	1 cut(s)	1591
AsuHPI	GGTGA	4 cut(s)	57, 1370, 1451, 2189
AsuNHI	GCTAGC	1 cut(s)	2263
AvaII	GGWCC	3 cut(s)	151, 944, 1828
AvrII	CCTAGG	1 cut(s)	1379
AxyI	CCTNAGG	1 cut(s)	2120
BaeI	ACNNNNGTAYC	2 cut(s)	2188, 2221
BalI	TGGCCA	1 cut(s)	1315
BamHI	GGATCC	1 cut(s)	163
BanI	GGYRCC	2 cut(s)	1586, 2115
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	3 cut(s)	129, 786, 2104
BbvCI	CCTCAGC	2 cut(s)	102, 840
BbvI	GCAGC	4 cut(s)	574, 629, 1276, 2225
BccI	CCATC	9 cut(s)	162, 433, 1408, 1430, 1498, 1789, 1882, 1961, 2291
BciT130I	CCWGG	4 cut(s)	137, 503, 1227, 1276
BciVI	GTATCC	3 cut(s)	450, 1551, 1664
BclI	TGATCA	3 cut(s)	1093, 1807, 1909
BcnI	CCSGG	1 cut(s)	1591
BcoDI	GTCTC	8 cut(s)	548, 960, 1263, 1284, 1603, 1674, 1930, 1966
BcuI	ACTAGT	1 cut(s)	494
BfmI	CTRYAG	3 cut(s)	46, 130, 2001
BfoI	RGCGCY	2 cut(s)	1717, 2119
BfrI	CTTAAG	1 cut(s)	158
BfuI	GTATCC	3 cut(s)	450, 1551, 1664
BglII	AGATCT	2 cut(s)	410, 2143
BisI	GCNGC	4 cut(s)	588, 643, 1290, 2214
BlnI	CCTAGG	1 cut(s)	1379
BlsI	GCNGC	4 cut(s)	589, 644, 1291, 2215
BmcAI	AGTACT	2 cut(s)	764, 1348
Bme1390I	CCNGG	5 cut(s)	137, 503, 1227, 1276, 1591
Bme18I	GGWCC	3 cut(s)	151, 944, 1828
BmgT120I	GGNCC	4 cut(s)	151, 656, 944, 1828
BmiI	GGNNCC	5 cut(s)	165, 946, 1588, 1829, 2117
BmrFI	CCNGG	5 cut(s)	137, 503, 1227, 1276, 1591
BmsI	GCATC	7 cut(s)	64, 196, 273, 677, 737, 1747, 2276
BmtI	GCTAGC	1 cut(s)	2267
BplI	GAGNNNNNCTC	2 cut(s)	1982, 2014
BpmI	CTGGAG	1 cut(s)	158
Bpu10I	CCTNAGC	3 cut(s)	102, 785, 840
BpuEI	CTTGAG	5 cut(s)	371, 427, 751, 1517, 1660
BpuMI	CCSGG	1 cut(s)	1591
BsaBI	GATNNNNATC	1 cut(s)	1914
BsaHI	GRCGYC	1 cut(s)	2116
BsaI	GGTCTC	1 cut(s)	1284
BsaJI	CCNNGG	5 cut(s)	1158, 1226, 1379, 1644, 2283
BsaXI	ACNNNNNCTCC	2 cut(s)	893, 923
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 328, 610, 941, 1496
Bse1I	ACTGG	2 cut(s)	760, 1618
Bse21I	CCTNAGG	1 cut(s)	2120
Bse3DI	GCAATG	6 cut(s)	127, 244, 245, 582, 652, 1509
Bse8I	GATNNNNATC	1 cut(s)	1914
BseBI	CCWGG	4 cut(s)	137, 503, 1227, 1276
BseDI	CCNNGG	5 cut(s)	1158, 1226, 1379, 1644, 2283
BseGI	GGATG	5 cut(s)	731, 1116, 1396, 1400, 1654
BseJI	GATNNNNATC	1 cut(s)	1914
BseLI	CCNNNNNNNGG	5 cut(s)	160, 328, 610, 941, 1496
BseMI	GCAATG	6 cut(s)	127, 244, 245, 582, 652, 1509
BseMII	CTCAG	8 cut(s)	93, 204, 376, 799, 831, 1941, 2027, 2111
BseNI	ACTGG	2 cut(s)	760, 1618
BseXI	GCAGC	4 cut(s)	574, 629, 1276, 2225
BseYI	CCCAGC	1 cut(s)	1516
BshFI	GGCC	2 cut(s)	658, 1315
BshNI	GGYRCC	2 cut(s)	1586, 2115
BsiHKAI	GWGCWC	3 cut(s)	129, 786, 2104
BsiSI	CCGG	1 cut(s)	1590
BslFI	GGGAC	4 cut(s)	861, 930, 1533, 1841
BslI	CCNNNNNNNGG	5 cut(s)	160, 328, 610, 941, 1496
BsmAI	GTCTC	8 cut(s)	548, 960, 1263, 1284, 1603, 1674, 1930, 1966
BsmBI	CGTCTC	1 cut(s)	1674
BsmFI	GGGAC	4 cut(s)	861, 930, 1533, 1841
BsmI	GAATGC	1 cut(s)	1577
BsnI	GGCC	2 cut(s)	658, 1315
Bso31I	GGTCTC	1 cut(s)	1284
Bsp1286I	GDGCHC	3 cut(s)	129, 786, 2104
Bsp1407I	TGTACA	1 cut(s)	1216
BspACI	CCGC	2 cut(s)	454, 1328
BspANI	GGCC	2 cut(s)	658, 1315
BspCNI	CTCAG	8 cut(s)	94, 205, 375, 798, 832, 1940, 2026, 2112
BspLI	GGNNCC	5 cut(s)	165, 946, 1588, 1829, 2117
BspMAI	CTGCAG	1 cut(s)	50
BspOI	GCTAGC	1 cut(s)	2267
BspPI	GGATC	6 cut(s)	158, 171, 375, 1309, 2022, 2174
BspT107I	GGYRCC	2 cut(s)	1586, 2115
BspTI	CTTAAG	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	1284
BsrDI	GCAATG	6 cut(s)	127, 244, 245, 582, 652, 1509
BsrGI	TGTACA	1 cut(s)	1216
BsrI	ACTGG	2 cut(s)	760, 1618
BssECI	CCNNGG	5 cut(s)	1158, 1226, 1379, 1644, 2283
BssNI	GRCGYC	1 cut(s)	2116
BssT1I	CCWWGG	3 cut(s)	1158, 1379, 2283
Bst2UI	CCWGG	4 cut(s)	137, 503, 1227, 1276
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	3 cut(s)	771, 1870, 2041
BstACI	GRCGYC	1 cut(s)	2116
BstAFI	CTTAAG	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	1216
BstC8I	GCNNGC	5 cut(s)	288, 524, 2265, 2307, 2311
BstDSI	CCRYGG	1 cut(s)	1644
BstF5I	GGATG	5 cut(s)	731, 1116, 1396, 1400, 1654
BstH2I	RGCGCY	2 cut(s)	1717, 2119
BstHHI	GCGC	4 cut(s)	274, 592, 1716, 2118
BstMAI	GTCTC	8 cut(s)	548, 960, 1263, 1284, 1603, 1674, 1930, 1966
BstMWI	GCNNNNNNNGC	1 cut(s)	1744
BstNI	CCWGG	4 cut(s)	137, 503, 1227, 1276
BstNSI	RCATGY	5 cut(s)	254, 393, 526, 1139, 2084
BstSCI	CCNGG	5 cut(s)	135, 501, 1225, 1274, 1589
BstSFI	CTRYAG	3 cut(s)	46, 130, 2001
BstV1I	GCAGC	4 cut(s)	574, 629, 1276, 2225
BstX2I	RGATCY	5 cut(s)	163, 367, 410, 1301, 2143
BstXI	CCANNNNNNTGG	2 cut(s)	1466, 2326
BstYI	RGATCY	5 cut(s)	163, 367, 410, 1301, 2143
Bsu36I	CCTNAGG	1 cut(s)	2120
BsuI	GTATCC	3 cut(s)	450, 1551, 1664
BsuRI	GGCC	2 cut(s)	658, 1315
BtgI	CCRYGG	1 cut(s)	1644
BtsCI	GGATG	5 cut(s)	731, 1116, 1396, 1400, 1654
BtsIMutI	CAGTG	3 cut(s)	55, 981, 2068
Cac8I	GCNNGC	5 cut(s)	288, 524, 2265, 2307, 2311
CfoI	GCGC	4 cut(s)	274, 592, 1716, 2118
Cfr13I	GGNCC	4 cut(s)	151, 656, 944, 1828
CseI	GACGC	1 cut(s)	2213
CsiI	ACCWGGT	1 cut(s)	1274
Csp6I	GTAC	6 cut(s)	34, 763, 1033, 1139, 1217, 1347
CviQI	GTAC	6 cut(s)	34, 763, 1033, 1139, 1217, 1347
DinI	GGCGCC	1 cut(s)	2117
DraI	TTTAAA	2 cut(s)	402, 567
EaeI	YGGCCR	1 cut(s)	1313
Eam1104I	CTCTTC	3 cut(s)	771, 1870, 2041
EarI	CTCTTC	3 cut(s)	771, 1870, 2041
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	3 cut(s)	1158, 1379, 2283
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	1284
Eco32I	GATATC	1 cut(s)	1816
Eco47I	GGWCC	3 cut(s)	151, 944, 1828
Eco47III	AGCGCT	1 cut(s)	1715
Eco53kI	GAGCTC	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	2120
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	1828
EcoRI	GAATTC	2 cut(s)	170, 2192
EcoRII	CCWGG	4 cut(s)	135, 501, 1225, 1274
EcoRV	GATATC	1 cut(s)	1816
EcoT14I	CCWWGG	3 cut(s)	1158, 1379, 2283
EcoT22I	ATGCAT	2 cut(s)	1577, 1740
EcoT38I	GRGCYC	1 cut(s)	129
EgeI	GGCGCC	1 cut(s)	2117
EheI	GGCGCC	1 cut(s)	2117
ErhI	CCWWGG	3 cut(s)	1158, 1379, 2283
Esp3I	CGTCTC	1 cut(s)	1674
FalI	AAGNNNNNCTT	2 cut(s)	2276, 2308
FaqI	GGGAC	4 cut(s)	861, 930, 1533, 1841
FauI	CCCGC	1 cut(s)	1335
FauNDI	CATATG	2 cut(s)	2093, 2220
FbaI	TGATCA	3 cut(s)	1093, 1807, 1909
Fnu4HI	GCNGC	4 cut(s)	588, 643, 1290, 2214
FokI	GGATG	5 cut(s)	718, 1123, 1383, 1387, 1661
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	588, 643, 1290, 2214
GlaI	GCGC	4 cut(s)	273, 591, 1715, 2117
GluI	GCNGC	4 cut(s)	588, 643, 1290, 2214
GsaI	CCCAGC	1 cut(s)	1520
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	2 cut(s)	1717, 2119
HaeIII	GGCC	2 cut(s)	658, 1315
HapII	CCGG	1 cut(s)	1590
HgaI	GACGC	1 cut(s)	2213
HhaI	GCGC	4 cut(s)	274, 592, 1716, 2118
Hin1I	GRCGYC	1 cut(s)	2116
Hin6I	GCGC	4 cut(s)	272, 590, 1714, 2116
HinP1I	GCGC	4 cut(s)	272, 590, 1714, 2116
HincII	GTYRAC	3 cut(s)	229, 1456, 1623
HindII	GTYRAC	3 cut(s)	229, 1456, 1623
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	5 cut(s)	242, 662, 845, 1243, 1521
HpaII	CCGG	1 cut(s)	1590
HphI	GGTGA	4 cut(s)	57, 1370, 1451, 2189
Hpy166II	GTNNAC	4 cut(s)	229, 1456, 1623, 1728
Hpy188I	TCNGA	6 cut(s)	214, 426, 850, 2016, 2189, 2242
Hpy8I	GTNNAC	4 cut(s)	229, 1456, 1623, 1728
HpyAV	CCTTC	2 cut(s)	615, 958
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	1683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1744
HpySE526I	ACGT	1 cut(s)	1683
Hsp92I	GRCGYC	1 cut(s)	2116
HspAI	GCGC	4 cut(s)	272, 590, 1714, 2116
KasI	GGCGCC	1 cut(s)	2115
Ksp22I	TGATCA	3 cut(s)	1093, 1807, 1909
LmnI	GCTCC	3 cut(s)	901, 1499, 1744
Lsp1109I	GCAGC	4 cut(s)	574, 629, 1276, 2225
LweI	GCATC	7 cut(s)	64, 196, 273, 677, 737, 1747, 2276
MabI	ACCWGGT	1 cut(s)	1274
MaeII	ACGT	1 cut(s)	1683
MaeIII	GTNAC	2 cut(s)	684, 1179
MboII	GAAGA	7 cut(s)	405, 788, 1791, 1857, 1910, 2058, 2153
MflI	RGATCY	5 cut(s)	163, 367, 410, 1301, 2143
MhlI	GDGCHC	3 cut(s)	129, 786, 2104
MlsI	TGGCCA	1 cut(s)	1315
MluNI	TGGCCA	1 cut(s)	1315
Mly113I	GGCGCC	1 cut(s)	2116
MlyI	GAGTC	1 cut(s)	1515
MmeI	TCCRAC	1 cut(s)	1428
Mox20I	TGGCCA	1 cut(s)	1315
Mph1103I	ATGCAT	2 cut(s)	1577, 1740
MscI	TGGCCA	1 cut(s)	1315
MseI	TTAA	9 cut(s)	39, 96, 159, 401, 566, 738, 804, 1638, 1752
MslI	CAYNNNNRTG	3 cut(s)	1464, 1752, 2295
Msp20I	TGGCCA	1 cut(s)	1315
MspA1I	CMGCKG	1 cut(s)	1931
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	1590
MspR9I	CCNGG	5 cut(s)	137, 503, 1227, 1276, 1591
Mva1269I	GAATGC	1 cut(s)	1577
MvaI	CCWGG	4 cut(s)	137, 503, 1227, 1276
MwoI	GCNNNNNNNGC	1 cut(s)	1744
NarI	GGCGCC	1 cut(s)	2116
NciI	CCSGG	1 cut(s)	1591
NdeI	CATATG	2 cut(s)	2093, 2220
NheI	GCTAGC	1 cut(s)	2263
NlaIV	GGNNCC	5 cut(s)	165, 946, 1588, 1829, 2117
NmuCI	GTSAC	1 cut(s)	684
NsiI	ATGCAT	2 cut(s)	1577, 1740
NspI	RCATGY	5 cut(s)	254, 393, 526, 1139, 2084
PaeI	GCATGC	1 cut(s)	526
PciI	ACATGT	1 cut(s)	2080
PctI	GAATGC	1 cut(s)	1577
PfeI	GAWTC	4 cut(s)	242, 662, 845, 1243
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	501
PkrI	GCNGC	4 cut(s)	589, 644, 1291, 2215
PleI	GAGTC	1 cut(s)	1515
PluTI	GGCGCC	1 cut(s)	2119
PpsI	GAGTC	1 cut(s)	1515
PpuMI	RGGWCCY	1 cut(s)	1828
PscI	ACATGT	1 cut(s)	2080
PshBI	ATTAAT	2 cut(s)	39, 1752
PsiI	TTATAA	1 cut(s)	818
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	1828
Psp6I	CCWGG	4 cut(s)	135, 501, 1225, 1274
PspFI	CCCAGC	1 cut(s)	1516
PspGI	CCWGG	4 cut(s)	135, 501, 1225, 1274
PspN4I	GGNNCC	5 cut(s)	165, 946, 1588, 1829, 2117
PspPI	GGNCC	4 cut(s)	151, 656, 944, 1828
PspPPI	RGGWCCY	1 cut(s)	1828
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	5 cut(s)	163, 367, 410, 1301, 2143
PvuII	CAGCTG	1 cut(s)	1931
RsaI	GTAC	6 cut(s)	35, 764, 1034, 1140, 1218, 1348
RsaNI	GTAC	6 cut(s)	34, 763, 1033, 1139, 1217, 1347
RseI	CAYNNNNRTG	3 cut(s)	1464, 1752, 2295
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	9 cut(s)	39, 96, 159, 401, 566, 738, 804, 1638, 1752
SatI	GCNGC	4 cut(s)	588, 643, 1290, 2214
Sau96I	GGNCC	4 cut(s)	151, 656, 944, 1828
SbfI	CCTGCAGG	1 cut(s)	50
ScaI	AGTACT	2 cut(s)	764, 1348
SchI	GAGTC	1 cut(s)	1515
ScrFI	CCNGG	5 cut(s)	137, 503, 1227, 1276, 1591
SdaI	CCTGCAGG	1 cut(s)	50
SduI	GDGCHC	3 cut(s)	129, 786, 2104
SexAI	ACCWGGT	1 cut(s)	1274
SfaNI	GCATC	7 cut(s)	64, 196, 273, 677, 737, 1747, 2276
SfcI	CTRYAG	3 cut(s)	46, 130, 2001
SfoI	GGCGCC	1 cut(s)	2117
SinI	GGWCC	3 cut(s)	151, 944, 1828
SmiMI	CAYNNNNRTG	3 cut(s)	1464, 1752, 2295
SmlI	CTYRAG	6 cut(s)	158, 350, 406, 766, 1532, 1675
SmoI	CTYRAG	6 cut(s)	158, 350, 406, 766, 1532, 1675
SpeI	ACTAGT	1 cut(s)	494
SphI	GCATGC	1 cut(s)	526
Sse8387I	CCTGCAGG	1 cut(s)	50
SsiI	CCGC	2 cut(s)	454, 1328
SspDI	GGCGCC	1 cut(s)	2115
SspI	AATATT	3 cut(s)	742, 1022, 1127
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	5 cut(s)	135, 501, 1225, 1274, 1589
StyI	CCWWGG	3 cut(s)	1158, 1379, 2283
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	1686
TaqI	TCGA	4 cut(s)	9, 307, 1241, 2026
TatI	WGTACW	4 cut(s)	762, 1032, 1216, 1346
TfiI	GAWTC	4 cut(s)	242, 662, 845, 1243
Tru1I	TTAA	9 cut(s)	39, 96, 159, 401, 566, 738, 804, 1638, 1752
Tru9I	TTAA	9 cut(s)	39, 96, 159, 401, 566, 738, 804, 1638, 1752
TscAI	CASTG	3 cut(s)	62, 981, 2068
TseFI	GTSAC	1 cut(s)	684
TseI	GCWGC	4 cut(s)	587, 642, 1289, 2213
Tsp45I	GTSAC	1 cut(s)	684
TspDTI	ATGAA	9 cut(s)	135, 255, 843, 1520, 1555, 1622, 1791, 2054, 2091
TspGWI	ACGGA	1 cut(s)	1661
TspRI	CASTG	3 cut(s)	62, 981, 2068
Van91I	CCANNNNNTGG	1 cut(s)	328
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	3 cut(s)	151, 944, 1828
VspI	ATTAAT	2 cut(s)	39, 1752
XapI	RAATTY	5 cut(s)	170, 561, 1062, 1984, 2192
XceI	RCATGY	5 cut(s)	254, 393, 526, 1139, 2084
XmaJI	CCTAGG	1 cut(s)	1379
ZrmI	AGTACT	2 cut(s)	764, 1348
Zsp2I	ATGCAT	2 cut(s)	1577, 1740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.