Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004508

Physical Location & Seq

Genomic Coordinates Forward (+)

73992735 .. 74007312

Gene Structure 14578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0551700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4044 bp

ATGGACACGAATAATTGGAGGCCTCCTCAAGGTGGAGAGCCTGCAATGGATGCAGGAGATTGGAGGAGCCAATTACAGCAGGATTCGCGGCAGAGAATCGTCAATAAGATAATGGATACATTGAAGAGGCATCTTCCCTTCTCCGGTCAAGAGGGATTGCATGAACTCAAGAAAATTGCTGTTAGGTTTGAGGAAAAGATTTATACTGCTGCTACAAGCCAGTCGGATTATCTACGGAAAATTTCTCTGAAAATGCTCACTATGGAGACCAAGTCTCAGAACCCAATTGGCACTTCTGTTCAAAGCAACTCTGCTGGTAATAGTAACAGGCCCCCTGATCCAGGATCTTTCATGCAACCCCAAGTTCCCAATCAAGGACAGTCACTCCCTATGTCAGTGCCAGCCAATCAATCTCAACCACGCCAACAACTCTTATCACAGAACATTCAGAATAACATTCCGCCCAATTCTGCTGGCTTATCATCTGCATTATCTCCTGCATCTGGGCTTACCCAGACTCCTGTACCGAGTATTGTTGGAAATGCAAACTTGCAAAGTATGTCGGGGACATCACAGAATTCGTTGGGGAACTCCATAGGCCAGGGGGTAACTTCAAATATGTTTGCTAATTCCCAAAGGCAAATGCCAGGACGACAACAGGTAGTTCAGCAGCAGCAACAGCAGCAGCCCCAGAATTCACAGCAGTATATGTACCAGCAACAGTTACAACAACAGCTCATGAAGCCAAAATTTCCGCAGCAGGGAAACATCCAACTTGTGCAAAATCATATGCAACAGCAACAACAGCAGCAGCAGCAGCAGAACTTATTACAACCACCTCAGTTGCAATCTTCTCAGCAATCTGTTATGCAACCTCCTGCAGTGCAGTCGTCTCTCTCAGGTCTTCAGCAGAATCAACAATCTGCTATGCAACACTCTTCACAAGCCATGCTTCAGCAGCATCCTCAATCTGTTCTGCGGCAGCAACAGCAACAGCAGCCTCAACAGTCTTCTGTTGTCCATCAGCAGCAAACACCAATCCCACAGCAGTCAATATTGCCCCCACAGCAGCAGCAGCAACAGCCACAGCTTATGGTGCAACAGCCAAATTCAACAAACTTGCCGCAGAATCAGCTTATTGGACAACAAAACAATGTAGGGGACATGCAGCAACAGCAACAGCAAAGGTTACTAAGCCAGCAGAATAATTTGTTAAACTTGCAACAGCAGCAGCAGCAGCAGCAACAACAACACCAATTAATGGCTCAGCAAAACAACCTCTCAAATATGCATCAGCAACAGTTGGGCCCTCAGAGTAATGTTACTGGATTACAGCAACAGCAGCACCTTGGTACTCAAACTGGTAACTCAAGCATGCAAACTAATCAGCACTCTGCACACATGCTGCAATCCAAGGTTCAGCAACAACATCAGAGTTCAGCATTACCAATTCAAGGACATCAGTCCCAACCTCAGGCGTCACAGCAACAATTATTATCACAGATTCAATCTCAGCCTGCACAGATACAACAACAGATGGGTATGCAACAGCAATCGAACCCGCTACAACGAGATATGCAGCAAAGGATCCAAGCATCAGGTCAGGTATCAGGATCCATGCTTCAACCACCAAATGTAATGGATCAGCAAAAGCAGTTATATCAAGCTCAAAGAGCCCTTCCTGAGACATCATCAACGTCTCTAGATTCCACAGCCCAGACTGGACATACAAATGGTGCTGATTGGCAAGAGGAGGTCTATCAAAAGATCAAAGTCATGAAGGATATGTACTACCCCGAACTAAGTGAAATGTACCAAAAAATTGCTACTAAACTTCATCAGCACGACTCCCTTCCACAACAGCCAAAGTCAGATCAGCTTGAGAAGCTGAAGATGTTTAAGACCATGCTGGAGCGCCTGATAACAGTCTTACAAATTTCCAAAACTAACATATCACCTGGTTTGAAGGAGAAGTTGGGTTTATACGAGAAGCAGATAATAAATTTTATTAATACAAATAGACCAAGGAAGCCTGTTTCTTCTCTGCCGCCAGGGCAGCTTCCCCCACCGCATATGCAGTCCATGCAGCAGTCACAATCCCAGATTACTCAAGTGCAATCTCATGAAAATCAGATGAACCCACAATTGCAATCCCTGAACTTGCAAGGTTCTGTGACAACAATGCAGCAGAACAATATGACGGGCATGCAGCAAAATTCTATGTCTTCTTTATCCGGGGTTTCAACAGCACAGCAAAACATGATGATTCCATTGCAGCCAAGTTCCAATATGGATCCAGGACAAGGAACCGCACTGAACTCACTGCAGCAGGTCCCTGTGGGCTCTATCCAACAGACTCCTGTCAGTGCTCCCCAACAAGCTAACATGAATGCCTTATCATCACAGAATGGGATTAACATGCTGCAGAGCAACATTAATCCCCTTCAGTCAAATTCTGGTATGCTTCATAGCCAACATCTGAAACAGCAGGAACAGCAATTGTATCAGAATCAACTCAAGCAACAACAATTTCAACAACGACAGATGCAGCAGCAGCAGTTGATGCAGAAGCAGCAGATAATTCAACAACAACAGCAGCAACAGCAACAACAGCTACAACAGCAAGCAAAGCAGCAGCTGCCTGGACAGTTGCAGGCACACCAAATGCCACAGCTTCACCAAATCAGTGATGTTAATGATGTGAAAATAAGGCCGGGGATGGGTGTTAAGCCAGGGGCCTTTCAGCAACATATGCCTGCAGGCCAGCGTGCTTATCCTCATTCGCAATTAAAACCAGGATCTCCATATCCTATTACATCAAGCAACCAACTCCTTCAGGCTCAATCTCCTCAACTGTCACAGCATTCTTCTCCACAAGTTGACCAGCCATTGTTAGTCCCAAAAGCTCAAAATGCTAGTTCACCATTTGTCATCCCATCTCCTTCAACTCCCATAGCTCCATCACCTATGCCAGGTGATTCAGAGAAACCTTCCTCACTCACAAATGCTGGGAATGTTGGACATCAACAAACAACTGCTGTCGGAGCTCAGGTCCAGTCCCTTGCCATCGGCACCCCTGGGATATCAGCCTCTCCTTTGCTTGCTGAATTTATCGGTCCAGATGGCACTCATGCTAATGCTTTGTCAGCTATATCTGGCAAGTCAAGTGTTACAGAGCAACCTCTTGAACGCTTGATTAAAGCGGTCAAGTCAATATCACCAAAGGCATTAAGTGCATCTGTCAGTGACATAGGCTCAGTAGTGAGTATGATTGATAGGATAGCAGGTTCAGCACCAGGTAATGGATCTAGAGCTGCAGTTGGTGAGGATCTGGTTGCTATGACAAAATGTCGTCTACAGGCGAGAAACTTCATCACTCATGATGGAACAACAAATGGGACAAGGAAAATGAGGCGATACACTAGTGCCATGCCCTTAAATGTTGTGTCATCAGGTGGCAGCATGAATGATAGTTTCAAGCAGTTGACCTGTTCAGAGACATCTGACCTGGAGTCAACTGCAACGTCTCGTATCAAAAGGCCTAGGATTGAGGCTAATCATGCTCTTATGGAAGAAATAAGAGAAATAAATCGGCGGCTTATAGATACAGTTGTTGATATCAGTGATGAAGATGTTGATCCAAGTGCGGCTGCTGCTGAAGGGGGTGAAGGAACCATCGTCAAGTGCTCTTTTGATGCTGTGGCTCTCAGTCCCAACTTGAAATCGCAGTATGCTTCAGCACAAATGTCTCCGATTCAGCCATTAAGGCTGCTTGTTCCGACAAATTATCCCAACTGCTCTCCAATACTGTTAGACAAGTTTCCGGTTGAAGTAAGTAAGGAGTATGAAGATCTTTCTGTGAAGGCAAAATCAAGGTTTAGCATCTCTTTACGAAGCATTTCGCAGCCCATGTCCCTTGGGGAGATAGCAAGGGCTTGGGATAATTGTGCACGTACAGTTATTTCTGAGCATGCACAGCGAAGTGGTGGAGGCAGCTTCAGCTCAAAGTATGGGACATGGGAGAACTGCCTGAGTGCCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1347

Amino Acids

148.65

Weight (kDa)

9.4

Isoelectric Point (pI)

71.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIX_2	PF16987	19 - 96	3e-35	KIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34280
fragaria_vesca	FvH4_2g04670 FvH4_2g04670
malus_domestica	MD05G1093800.v1.1
prunus_persica	Prupe.8G138700_v2.0.a1 Prupe.8G138700_v2.0.a1
pyrus_communis	pycom05g09290
rosa_chinensis	RchiOBHm_Chr6g0254291 RchiOBHm_Chr6g0254331 RchiOBHm_Chr6g0254371
rosa_laevigata	RLG00000014132 RLG00000014922 RLG00000014929
rosa_multiflora	Rmu_sc0012713.1_g000001 Rmu_sc0012713.1_g000002 Rmu_sc0027609.1_g000001 Rmu_ssc0000412.1_g000017
rosa_roxburghii	Rroxscaffold_7G00210950
rosa_rugosa	Rorug05G0551700 Rorug05G0551800 Rorug05G0551800
rosa_samantha	Rh6AG068100 Rh6AG068600 Rh6BG061000 Rh6BG061300 Rh6CG060800 Rh6CG061200 Rh6DG057900 Rh6DG058100 Rh6DG058500
rosa_wichuraiana	Rw6G005970 Rw6G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	2320, 3275
AccB1I	GGYRCC	1 cut(s)	3071
AccB7I	CCANNNNNTGG	2 cut(s)	1261, 3302
AccI	GTMKAC	1 cut(s)	3355
AccII	CGCG	1 cut(s)	88
AcuI	CTGAAG	8 cut(s)	890, 938, 1910, 2429, 2819, 3678, 3720, 3982
AcyI	GRCGYC	1 cut(s)	1478
AfaI	GTAC	6 cut(s)	525, 713, 1354, 1790, 1814, 3955
AhdI	GACNNNNNGTC	2 cut(s)	3348, 3511
AhlI	ACTAGT	1 cut(s)	3422
AjuI	GAANNNNNNNTTGG	4 cut(s)	277, 309, 1958, 1990
AloI	GAACNNNNNNTCC	2 cut(s)	3271, 3303
Alw21I	GWGCWC	4 cut(s)	2371, 3049, 3689, 3952
Alw26I	GTCTC	8 cut(s)	260, 279, 897, 1679, 1704, 3491, 3531, 3753
Alw44I	GTGCAC	1 cut(s)	3948
AlwNI	CAGNNNCTG	1 cut(s)	2638
AoxI	GGCC	8 cut(s)	20, 329, 598, 1306, 2711, 2736, 2761, 3539
ApaI	GGGCCC	1 cut(s)	1310
ApaLI	GTGCAC	1 cut(s)	3948
AseI	ATTAAT	3 cut(s)	1259, 2010, 2436
Asp700I	GAANNNNTTC	1 cut(s)	3898
AspA2I	CCTAGG	1 cut(s)	3542
AspLEI	GCGC	1 cut(s)	1917
AspS9I	GGNCC	7 cut(s)	330, 1306, 1307, 2332, 2736, 3052, 3116
AsuC2I	CCSGG	2 cut(s)	2236, 2715
AsuHPI	GGTGA	8 cut(s)	1947, 2669, 2913, 2955, 2987, 3210, 3335, 3677
AvaII	GGWCC	3 cut(s)	2332, 3052, 3116
AvrII	CCTAGG	1 cut(s)	3542
AxyI	CCTNAGG	1 cut(s)	1473
BaeGI	GKGCMC	2 cut(s)	1310, 3952
BaeI	ACNNNNGTAYC	6 cut(s)	507, 540, 3409, 3442, 3597, 3630
BamHI	GGATCC	3 cut(s)	1587, 1613, 2293
BanI	GGYRCC	1 cut(s)	3071
BanII	GRGCYC	4 cut(s)	1310, 1678, 2345, 3049
BarI	GAAGNNNNNNTAC	2 cut(s)	1772, 1804
BbsI	GAAGAC	3 cut(s)	896, 1002, 2217
Bbv12I	GWGCWC	4 cut(s)	2371, 3049, 3689, 3952
BccI	CCATC	9 cut(s)	1029, 1531, 2713, 2944, 2968, 3074, 3116, 3377, 3683
BcgI	CGANNNNNNTGC	2 cut(s)	870, 904
BciVI	GTATCC	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	2236, 2715
BcoDI	GTCTC	8 cut(s)	260, 279, 897, 1679, 1704, 3491, 3531, 3753
BcuI	ACTAGT	1 cut(s)	3422
BfaI	CTAG	5 cut(s)	1703, 2916, 3309, 3423, 3543
BfmI	CTRYAG	6 cut(s)	879, 2324, 2423, 2757, 3315, 3356
BfoI	RGCGCY	1 cut(s)	1918
BfuAI	ACCTGC	2 cut(s)	2320, 3275
BfuI	GTATCC	1 cut(s)	109
BglI	GCCNNNNNGGC	2 cut(s)	2053, 3766
BglII	AGATCT	1 cut(s)	3850
BlnI	CCTAGG	1 cut(s)	3542
BlpI	GCTNAGC	1 cut(s)	1266
Bme18I	GGWCC	3 cut(s)	2332, 3052, 3116
BmeRI	GACNNNNNGTC	2 cut(s)	3348, 3511
BmgT120I	GGNCC	7 cut(s)	330, 1306, 1307, 2332, 2736, 3052, 3116
BoxI	GACNNNNGTC	2 cut(s)	1462, 2360
BpiI	GAAGAC	3 cut(s)	896, 1002, 2217
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	2 cut(s)	1931, 3530
Bpu10I	CCTNAGC	1 cut(s)	3048
Bpu1102I	GCTNAGC	1 cut(s)	1266
BpuEI	CTTGAG	6 cut(s)	12, 152, 1354, 1901, 2094, 2501
BpuMI	CCSGG	2 cut(s)	2236, 2715
BsaAI	YACGTR	1 cut(s)	3953
BsaBI	GATNNNNATC	1 cut(s)	3636
BsaHI	GRCGYC	1 cut(s)	1478
BsaI	GGTCTC	1 cut(s)	260
BsaWI	WCCGGW	2 cut(s)	143, 3823
BsaXI	ACNNNNNCTCC	8 cut(s)	257, 287, 369, 399, 502, 532, 3036, 3066
Bse1I	ACTGG	5 cut(s)	220, 1330, 1366, 1726, 3055
Bse21I	CCTNAGG	1 cut(s)	1473
Bse3DI	GCAATG	2 cut(s)	51, 2270
Bse8I	GATNNNNATC	1 cut(s)	3636
BseGI	GGATG	5 cut(s)	55, 768, 961, 2724, 2931
BseJI	GATNNNNATC	1 cut(s)	3636
BseMI	GCAATG	2 cut(s)	51, 2270
BseNI	ACTGG	5 cut(s)	220, 1330, 1366, 1726, 3055
BseRI	GAGGAG	4 cut(s)	15, 79, 1766, 2838
BseSI	GKGCMC	2 cut(s)	1310, 3952
BseYI	CCCAGC	1 cut(s)	3008
BsgI	GTGCAG	3 cut(s)	905, 1380, 1503
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	8 cut(s)	22, 331, 600, 1308, 2713, 2738, 2763, 3541
BshNI	GGYRCC	1 cut(s)	3071
BsiHKAI	GWGCWC	4 cut(s)	2371, 3049, 3689, 3952
BsiSI	CCGG	4 cut(s)	144, 2235, 2714, 3824
BsmAI	GTCTC	8 cut(s)	260, 279, 897, 1679, 1704, 3491, 3531, 3753
BsmBI	CGTCTC	3 cut(s)	897, 1704, 3531
BsmI	GAATGC	2 cut(s)	2395, 2863
BsnI	GGCC	8 cut(s)	22, 331, 600, 1308, 2713, 2738, 2763, 3541
Bso31I	GGTCTC	1 cut(s)	260
Bsp120I	GGGCCC	1 cut(s)	1306
Bsp1286I	GDGCHC	7 cut(s)	1310, 1678, 2345, 2371, 3049, 3689, 3952
Bsp1720I	GCTNAGC	1 cut(s)	1266
BspANI	GGCC	8 cut(s)	22, 331, 600, 1308, 2713, 2738, 2763, 3541
BspFNI	CGCG	1 cut(s)	88
BspHI	TCATGA	4 cut(s)	738, 1776, 2122, 3379
BspMAI	CTGCAG	5 cut(s)	883, 2328, 2427, 2761, 3319
BspMI	ACCTGC	2 cut(s)	2320, 3275
BspT107I	GGYRCC	1 cut(s)	3071
BspTNI	GGTCTC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	51, 2270
BsrI	ACTGG	5 cut(s)	220, 1330, 1366, 1726, 3055
BssNI	GRCGYC	1 cut(s)	1478
BssT1I	CCWWGG	5 cut(s)	1348, 1413, 2024, 3542, 3916
Bst6I	CTCTTC	2 cut(s)	119, 943
BstACI	GRCGYC	1 cut(s)	1478
BstAPI	GCANNNNNTGC	6 cut(s)	50, 2083, 2563, 2638, 2752, 3233
BstBAI	YACGTR	1 cut(s)	3953
BstENI	CCTNNNNNAGG	3 cut(s)	27, 339, 2970
BstF5I	GGATG	5 cut(s)	55, 768, 961, 2724, 2931
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	1918
BstHHI	GCGC	1 cut(s)	1917
BstMAI	GTCTC	8 cut(s)	260, 279, 897, 1679, 1704, 3491, 3531, 3753
BstNSI	RCATGY	6 cut(s)	1168, 1378, 1405, 2209, 2422, 3974
BstPAI	GACNNNNGTC	2 cut(s)	1462, 2360
BstSFI	CTRYAG	6 cut(s)	879, 2324, 2423, 2757, 3315, 3356
BstSLI	GKGCMC	2 cut(s)	1310, 3952
BstUI	CGCG	1 cut(s)	88
BstV2I	GAAGAC	3 cut(s)	896, 1002, 2217
BstX2I	RGATCY	8 cut(s)	344, 1587, 1613, 2293, 2798, 3305, 3328, 3850
BstYI	RGATCY	8 cut(s)	344, 1587, 1613, 2293, 2798, 3305, 3328, 3850
Bsu36I	CCTNAGG	1 cut(s)	1473
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	8 cut(s)	22, 331, 600, 1308, 2713, 2738, 2763, 3541
BtsCI	GGATG	5 cut(s)	55, 768, 961, 2724, 2931
BtsI	GCAGTG	2 cut(s)	888, 2321
BtsIMutI	CAGTG	8 cut(s)	402, 888, 2312, 2321, 2371, 2692, 3250, 3628
BveI	ACCTGC	2 cut(s)	2320, 3275
CaiI	CAGNNNCTG	1 cut(s)	2638
CciI	TCATGA	4 cut(s)	738, 1776, 2122, 3379
CfoI	GCGC	1 cut(s)	1917
Cfr13I	GGNCC	7 cut(s)	330, 1306, 1307, 2332, 2736, 3052, 3116
CseI	GACGC	1 cut(s)	1467
CsiI	ACCWGGT	2 cut(s)	1957, 3295
Csp6I	GTAC	6 cut(s)	524, 712, 1353, 1789, 1813, 3954
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviQI	GTAC	6 cut(s)	524, 712, 1353, 1789, 1813, 3954
DriI	GACNNNNNGTC	2 cut(s)	3348, 3511
Eam1104I	CTCTTC	2 cut(s)	119, 943
Eam1105I	GACNNNNNGTC	2 cut(s)	3348, 3511
EarI	CTCTTC	2 cut(s)	119, 943
EciI	GGCGGA	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	3047
Eco130I	CCWWGG	5 cut(s)	1348, 1413, 2024, 3542, 3916
Eco147I	AGGCCT	2 cut(s)	22, 3541
Eco24I	GRGCYC	4 cut(s)	1310, 1678, 2345, 3049
Eco31I	GGTCTC	1 cut(s)	260
Eco32I	GATATC	2 cut(s)	3084, 3619
Eco47I	GGWCC	3 cut(s)	2332, 3052, 3116
Eco53kI	GAGCTC	1 cut(s)	3047
Eco57I	CTGAAG	8 cut(s)	890, 938, 1910, 2429, 2819, 3678, 3720, 3982
Eco81I	CCTNAGG	1 cut(s)	1473
EcoICRI	GAGCTC	1 cut(s)	3047
EcoNI	CCTNNNNNAGG	3 cut(s)	27, 339, 2970
EcoO109I	RGGNCCY	4 cut(s)	330, 1307, 2332, 2736
EcoRI	GAATTC	2 cut(s)	577, 694
EcoRV	GATATC	2 cut(s)	3084, 3619
EcoT14I	CCWWGG	5 cut(s)	1348, 1413, 2024, 3542, 3916
EcoT22I	ATGCAT	1 cut(s)	1293
EcoT38I	GRGCYC	4 cut(s)	1310, 1678, 2345, 3049
ErhI	CCWWGG	5 cut(s)	1348, 1413, 2024, 3542, 3916
Esp3I	CGTCTC	3 cut(s)	897, 1704, 3531
FalI	AAGNNNNNCTT	2 cut(s)	936, 968
FauI	CCCGC	1 cut(s)	1569
FauNDI	CATATG	3 cut(s)	789, 2073, 2751
FblI	GTMKAC	1 cut(s)	3355
FokI	GGATG	5 cut(s)	62, 755, 948, 2731, 2918
FriOI	GRGCYC	4 cut(s)	1310, 1678, 2345, 3049
FspBI	CTAG	5 cut(s)	1703, 2916, 3309, 3423, 3543
GlaI	GCGC	1 cut(s)	1916
GsaI	CCCAGC	1 cut(s)	3012
GsuI	CTGGAG	2 cut(s)	1931, 3530
HaeII	RGCGCY	1 cut(s)	1918
HaeIII	GGCC	8 cut(s)	22, 331, 600, 1308, 2713, 2738, 2763, 3541
HapII	CCGG	4 cut(s)	144, 2235, 2714, 3824
HgaI	GACGC	1 cut(s)	1467
HhaI	GCGC	1 cut(s)	1917
Hin1I	GRCGYC	1 cut(s)	1478
Hin6I	GCGC	1 cut(s)	1915
HinP1I	GCGC	1 cut(s)	1915
HincII	GTYRAC	3 cut(s)	2881, 3486, 3516
HindII	GTYRAC	3 cut(s)	2881, 3486, 3516
HpaII	CCGG	4 cut(s)	144, 2235, 2714, 3824
HphI	GGTGA	8 cut(s)	1947, 2669, 2913, 2955, 2987, 3210, 3335, 3677
Hpy166II	GTNNAC	6 cut(s)	2881, 2921, 3356, 3486, 3516, 3950
Hpy8I	GTNNAC	6 cut(s)	2881, 2921, 3356, 3486, 3516, 3950
HpyCH4IV	ACGT	3 cut(s)	1697, 3524, 3952
HpySE526I	ACGT	3 cut(s)	1697, 3524, 3952
Hsp92I	GRCGYC	1 cut(s)	1478
HspAI	GCGC	1 cut(s)	1915
LmnI	GCTCC	5 cut(s)	66, 1912, 2374, 2962, 3044
MabI	ACCWGGT	2 cut(s)	1957, 3295
MaeI	CTAG	5 cut(s)	1703, 2916, 3309, 3423, 3543
MaeII	ACGT	3 cut(s)	1697, 3524, 3952
MfeI	CAATTG	3 cut(s)	285, 2144, 2498
MflI	RGATCY	8 cut(s)	344, 1587, 1613, 2293, 2798, 3305, 3328, 3850
MhlI	GDGCHC	7 cut(s)	1310, 1678, 2345, 2371, 3049, 3689, 3952
MlyI	GAGTC	4 cut(s)	511, 1841, 2350, 3521
MmeI	TCCRAC	7 cut(s)	204, 517, 796, 2374, 2998, 3022, 3803
Mph1103I	ATGCAT	1 cut(s)	1293
MroXI	GAANNNNTTC	1 cut(s)	3898
MslI	CAYNNNNRTG	2 cut(s)	1731, 3135
MspA1I	CMGCKG	1 cut(s)	2638
MspI	CCGG	4 cut(s)	144, 2235, 2714, 3824
MunI	CAATTG	3 cut(s)	285, 2144, 2498
Mva1269I	GAATGC	2 cut(s)	2395, 2863
MvnI	CGCG	1 cut(s)	88
NciI	CCSGG	2 cut(s)	2236, 2715
NdeI	CATATG	3 cut(s)	789, 2073, 2751
NmuCI	GTSAC	6 cut(s)	381, 1479, 2091, 2173, 2856, 3245
NsiI	ATGCAT	1 cut(s)	1293
NspI	RCATGY	6 cut(s)	1168, 1378, 1405, 2209, 2422, 3974
PaeI	GCATGC	3 cut(s)	1378, 2209, 3974
PagI	TCATGA	4 cut(s)	738, 1776, 2122, 3379
PasI	CCCWGGG	1 cut(s)	3077
PceI	AGGCCT	2 cut(s)	22, 3541
PctI	GAATGC	2 cut(s)	2395, 2863
PdmI	GAANNNNTTC	1 cut(s)	3898
PflFI	GACNNNGTC	1 cut(s)	271
PflMI	CCANNNNNTGG	2 cut(s)	1261, 3302
PfoI	TCCNGGA	2 cut(s)	340, 2296
PleI	GAGTC	4 cut(s)	511, 1841, 2350, 3520
PpsI	GAGTC	4 cut(s)	511, 1841, 2350, 3520
Ppu21I	YACGTR	1 cut(s)	3953
PpuMI	RGGWCCY	1 cut(s)	2332
PshAI	GACNNNNGTC	2 cut(s)	1462, 2360
PshBI	ATTAAT	3 cut(s)	1259, 2010, 2436
Psp124BI	GAGCTC	1 cut(s)	3049
Psp5II	RGGWCCY	1 cut(s)	2332
PspFI	CCCAGC	1 cut(s)	3008
PspOMI	GGGCCC	1 cut(s)	1306
PspPI	GGNCC	7 cut(s)	330, 1306, 1307, 2332, 2736, 3052, 3116
PspPPI	RGGWCCY	1 cut(s)	2332
PstI	CTGCAG	5 cut(s)	883, 2328, 2427, 2761, 3319
PstNI	CAGNNNCTG	1 cut(s)	2638
PsuI	RGATCY	8 cut(s)	344, 1587, 1613, 2293, 2798, 3305, 3328, 3850
PsyI	GACNNNGTC	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	2638
RsaI	GTAC	6 cut(s)	525, 713, 1354, 1790, 1814, 3955
RsaNI	GTAC	6 cut(s)	524, 712, 1353, 1789, 1813, 3954
RseI	CAYNNNNRTG	2 cut(s)	1731, 3135
SacI	GAGCTC	1 cut(s)	3049
Sau96I	GGNCC	7 cut(s)	330, 1306, 1307, 2332, 2736, 3052, 3116
SbfI	CCTGCAGG	1 cut(s)	2761
SchI	GAGTC	4 cut(s)	511, 1841, 2350, 3521
SdaI	CCTGCAGG	1 cut(s)	2761
SduI	GDGCHC	7 cut(s)	1310, 1678, 2345, 2371, 3049, 3689, 3952
SexAI	ACCWGGT	2 cut(s)	1957, 3295
SfcI	CTRYAG	6 cut(s)	879, 2324, 2423, 2757, 3315, 3356
SinI	GGWCC	3 cut(s)	2332, 3052, 3116
SmiMI	CAYNNNNRTG	2 cut(s)	1731, 3135
SmlI	CTYRAG	6 cut(s)	27, 167, 1369, 1880, 2109, 2516
SmoI	CTYRAG	6 cut(s)	27, 167, 1369, 1880, 2109, 2516
SpeI	ACTAGT	1 cut(s)	3422
SphI	GCATGC	3 cut(s)	1378, 2209, 3974
Sse8387I	CCTGCAGG	1 cut(s)	2761
SseBI	AGGCCT	2 cut(s)	22, 3541
SspI	AATATT	1 cut(s)	1056
SspMI	CTAG	5 cut(s)	1703, 2916, 3309, 3423, 3543
SstI	GAGCTC	1 cut(s)	3049
StuI	AGGCCT	2 cut(s)	22, 3541
StyI	CCWWGG	5 cut(s)	1348, 1413, 2024, 3542, 3916
TaiI	ACGT	3 cut(s)	1700, 3527, 3955
TaqI	TCGA	1 cut(s)	1556
TaqII	GACCGA	1 cut(s)	3104
TatI	WGTACW	1 cut(s)	1788
TauI	GCSGC	7 cut(s)	91, 982, 1126, 2050, 3598, 3650, 4040
TscAI	CASTG	8 cut(s)	402, 888, 2319, 2328, 2371, 2692, 3250, 3628
TseFI	GTSAC	6 cut(s)	381, 1479, 2091, 2173, 2856, 3245
Tsp45I	GTSAC	6 cut(s)	381, 1479, 2091, 2173, 2856, 3245
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	8 cut(s)	402, 888, 2319, 2328, 2371, 2692, 3250, 3628
Tth111I	GACNNNGTC	1 cut(s)	271
Van91I	CCANNNNNTGG	2 cut(s)	1261, 3302
VneI	GTGCAC	1 cut(s)	3948
VpaK11BI	GGWCC	3 cut(s)	2332, 3052, 3116
VspI	ATTAAT	3 cut(s)	1259, 2010, 2436
XagI	CCTNNNNNAGG	3 cut(s)	27, 339, 2970
XbaI	TCTAGA	2 cut(s)	1702, 3308
XceI	RCATGY	6 cut(s)	1168, 1378, 1405, 2209, 2422, 3974
XmaJI	CCTAGG	1 cut(s)	3542
XmiI	GTMKAC	1 cut(s)	3355
XmnI	GAANNNNTTC	1 cut(s)	3898
XspI	CTAG	5 cut(s)	1703, 2916, 3309, 3423, 3543
Zsp2I	ATGCAT	1 cut(s)	1293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.