Rmu_sc0028652.1_g000009

Long chain acyl-CoA synthetase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028652.1
Physical Location & Seq
Forward (+)
21569 .. 28281
6713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028652.1_g000009.1.cds

Sequence Viewer

Length: 1551 bp
atggattccactccagctcagcgtcgcctcgaagccattagcggccacctcatctccgacgccgactccctctccattctccgccccaacgccaccgccggcgagttcgtttccgagcaagggtacagtgtggtgcttccagagaaactagatacaggaaaatggaatgtatacagatctgcgcgttctcctttgaagcttgttagtagattccctgatcatcccgaaattgctacgcttcatgataattttgtgcactcagttgatacgttcagagattacaaatatttgggaacaagaattcgggtcgatggaacagttggagaatacaaatggatgacgtttggagaagcagatactgctcggtcagcaataggttctggcctcatatatcatgggataccaaagggatcttgcattgggttgtattttataaacagaccggagtggatgattgttgatcatgcctgctctgcatattcttacatatcagttcctttgtatgacacgctaggtccagatgctgtcaaatacattgcaaatcatgctgttgtacaagttatattttgcgttcccgaaacattgaatagtatattgagctttctctcagatattccaactgtacgcctcattgtggttgttggaggcatagatgaacaaataccatcccttccgccttcaacgggagtgaaggttgtaacatattcaacattgctcaatcagggccgtagtagcatgcagcctttctgcccaccaaagtcggatgatattgcaacaatttgctacacaagtggcacaactggcactccaaagggagctgtattgtctcatggaaacttgattgcaagtgttgctggggccacttttggtatccagttctacccctctgatgtttacatatcatatcttcctttggcacacatatatgagcgggctaaccaggtcatgacggtacattttggagttgctgttggattctaccaaggggataatatgaaattgatggatgatatggctgctctaagaccaactatcttctgcagtgtccctaggctgtataacagaatatatgctggaatcacgaatgctgtaaagacatcaggtgtgctgagggagaggctatttaatgctgcttacaatgccaagaagaaggcattattaagtggaaaaaatccatctcccatgtgggacaggttggtgtttaataagataaaggctaagctaggaggacgtgttcgttttatggcatcaggtgcttcacccttgtctcctgatgttatggactttttaaaaatatgctttgggggtgacgtaaatgaagggtatggaatgaccgagacttcctgtgttattagtactatggacagcggtgacaacatatctggccatgttggctctcctagtccagcttgcggtgccattccgattgtatctgattgtctgagctatcatgtctttactgatggacgaattttgcctggacattgcatgaaaaagatccaaaaactagtggatatcatggataagttgtggttgtatacttgtaattga

Protein Analysis

516

Amino Acids

56.34

Weight (kDa)

7.9

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 1415
AccBSI CCGCTC 1 cut(s) 931
AccI GTMKAC 2 cut(s) 171, 1538
AccII CGCG 1 cut(s) 184
AciI CCGC 7 cut(s) 42, 82, 96, 674, 931, 1368, 1413
AclWI GGATC 2 cut(s) 418, 1492
AcoI YGGCCR 2 cut(s) 43, 1384
AcsI RAATTY 2 cut(s) 300, 1470
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 5 cut(s) 125, 555, 624, 954, 1357
AfiI CCNNNNNNNGG 4 cut(s) 120, 634, 683, 1412
AflIII ACRYGT 1 cut(s) 1231
AgsI TTSAA 4 cut(s) 196, 586, 681, 708
AhlI ACTAGT 1 cut(s) 1507
AjiI CACGTC 1 cut(s) 1232
AjnI CCWGG 2 cut(s) 939, 1477
AloI GAACNNNNNNTCC 2 cut(s) 1218, 1250
AluBI AGCT 7 cut(s) 17, 199, 600, 818, 1222, 1409, 1446
AluI AGCT 7 cut(s) 17, 199, 600, 818, 1222, 1409, 1446
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 3 cut(s) 831, 1272, 1331
Alw44I GTGCAC 1 cut(s) 254
AlwI GGATC 2 cut(s) 418, 1492
AlwNI CAGNNNCTG 2 cut(s) 359, 524
AoxI GGCC 5 cut(s) 43, 382, 724, 858, 1384
ApaLI GTGCAC 1 cut(s) 254
ApeKI GCWGC 3 cut(s) 739, 1016, 1130
ApoI RAATTY 2 cut(s) 300, 1470
AspA2I CCTAGG 1 cut(s) 1049
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 3 cut(s) 515, 724, 858
AsuHPI GGTGA 3 cut(s) 1251, 1319, 1382
AvaII GGWCC 1 cut(s) 515
AvrII CCTAGG 1 cut(s) 1049
BaeGI GKGCMC 1 cut(s) 258
BalI TGGCCA 1 cut(s) 1386
BanI GGYRCC 1 cut(s) 1415
Bbv12I GWGCWC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 1109
BbvI GCAGC 3 cut(s) 751, 1003, 1117
BccI CCATC 5 cut(s) 305, 673, 997, 1183, 1457
BceAI ACGGC 1 cut(s) 711
BciT130I CCWGG 2 cut(s) 941, 1479
BciVI GTATCC 2 cut(s) 393, 881
BclI TGATCA 2 cut(s) 217, 460
BcoDI GTCTC 3 cut(s) 831, 1272, 1331
BcuI ACTAGT 1 cut(s) 1507
BfaI CTAG 6 cut(s) 149, 512, 1050, 1223, 1401, 1508
BfmI CTRYAG 1 cut(s) 1039
BfuI GTATCC 2 cut(s) 393, 881
BglI GCCNNNNNGGC 1 cut(s) 1392
BglII AGATCT 1 cut(s) 176
BisI GCNGC 4 cut(s) 43, 740, 1017, 1131
BlnI CCTAGG 1 cut(s) 1049
BlpI GCTNAGC 2 cut(s) 18, 1218
BlsI GCNGC 4 cut(s) 44, 741, 1018, 1132
BmcAI AGTACT 1 cut(s) 1357
Bme1390I CCNGG 2 cut(s) 941, 1479
Bme18I GGWCC 1 cut(s) 515
BmgBI CACGTC 1 cut(s) 1232
BmgT120I GGNCC 3 cut(s) 515, 724, 858
BmiI GGNNCC 2 cut(s) 859, 1417
BmrFI CCNGG 2 cut(s) 941, 1479
BmsI GCATC 2 cut(s) 511, 1256
Bpu10I CCTNAGC 1 cut(s) 1109
Bpu1102I GCTNAGC 2 cut(s) 18, 1218
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 982, 1049
BsaWI WCCGGW 1 cut(s) 442
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 634, 683, 1412
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 805, 874
Bse3DI GCAATG 3 cut(s) 534, 710, 1483
BseBI CCWGG 2 cut(s) 941, 1479
BseDI CCNNGG 2 cut(s) 982, 1049
BseGI GGATG 6 cut(s) 220, 342, 456, 665, 769, 1012
BseLI CCNNNNNNNGG 4 cut(s) 120, 634, 683, 1412
BseMI GCAATG 3 cut(s) 534, 710, 1483
BseMII CTCAG 5 cut(s) 32, 273, 621, 1100, 1433
BseNI ACTGG 2 cut(s) 805, 874
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 3 cut(s) 751, 1003, 1117
BseYI CCCAGC 1 cut(s) 854
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 5 cut(s) 45, 384, 726, 860, 1386
BshNI GGYRCC 1 cut(s) 1415
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 2 cut(s) 99, 443
BslFI GGGAC 2 cut(s) 1031, 1202
BslI CCNNNNNNNGG 4 cut(s) 120, 634, 683, 1412
BsmAI GTCTC 3 cut(s) 831, 1272, 1331
BsmFI GGGAC 2 cut(s) 1031, 1202
BsmI GAATGC 1 cut(s) 1090
BsnI GGCC 5 cut(s) 45, 384, 726, 860, 1386
Bsp1286I GDGCHC 1 cut(s) 258
Bsp1407I TGTACA 1 cut(s) 553
Bsp143I GATC 5 cut(s) 176, 217, 410, 460, 1497
Bsp1720I GCTNAGC 2 cut(s) 18, 1218
BspACI CCGC 7 cut(s) 42, 82, 96, 674, 931, 1368, 1413
BspANI GGCC 5 cut(s) 45, 384, 726, 860, 1386
BspCNI CTCAG 5 cut(s) 31, 272, 620, 1101, 1434
BspFNI CGCG 1 cut(s) 184
BspHI TCATGA 2 cut(s) 241, 945
BspLI GGNNCC 2 cut(s) 859, 1417
BspMAI CTGCAG 1 cut(s) 1043
BspPI GGATC 2 cut(s) 418, 1492
BspT107I GGYRCC 1 cut(s) 1415
BsrBI CCGCTC 1 cut(s) 931
BsrDI GCAATG 3 cut(s) 534, 710, 1483
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 553
BsrI ACTGG 2 cut(s) 805, 874
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 982, 1049
BssMI GATC 5 cut(s) 176, 217, 410, 460, 1497
BssNAI GTATAC 2 cut(s) 172, 1539
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 2 cut(s) 982, 1049
Bst1107I GTATAC 2 cut(s) 172, 1539
Bst2UI CCWGG 2 cut(s) 941, 1479
Bst4CI ACNGT 4 cut(s) 128, 319, 622, 952
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 4 cut(s) 359, 545, 851, 1253
BstAUI TGTACA 1 cut(s) 553
BstC8I GCNNGC 5 cut(s) 100, 469, 737, 933, 1411
BstDEI CTNAG 7 cut(s) 18, 259, 607, 1022, 1109, 1218, 1442
BstF5I GGATG 6 cut(s) 220, 342, 456, 665, 769, 1012
BstFNI CGCG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 5 cut(s) 179, 220, 413, 463, 1500
BstMAI GTCTC 3 cut(s) 831, 1272, 1331
BstMBI GATC 5 cut(s) 176, 217, 410, 460, 1497
BstNI CCWGG 2 cut(s) 941, 1479
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 2 cut(s) 939, 1477
BstSFI CTRYAG 1 cut(s) 1039
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 3 cut(s) 751, 1003, 1117
BstX2I RGATCY 3 cut(s) 176, 410, 1497
BstYI RGATCY 3 cut(s) 176, 410, 1497
BstZ17I GTATAC 2 cut(s) 172, 1539
BsuI GTATCC 2 cut(s) 393, 881
BsuRI GGCC 5 cut(s) 45, 384, 726, 860, 1386
BtrI CACGTC 1 cut(s) 1232
BtsCI GGATG 6 cut(s) 220, 342, 456, 665, 769, 1012
BtsI GCAGTG 1 cut(s) 1048
BtsIMutI CAGTG 2 cut(s) 133, 1048
Cac8I GCNNGC 5 cut(s) 100, 469, 737, 933, 1411
CaiI CAGNNNCTG 2 cut(s) 359, 524
CciI TCATGA 2 cut(s) 241, 945
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 3 cut(s) 515, 724, 858
CseI GACGC 2 cut(s) 11, 68
CsiI ACCWGGT 1 cut(s) 939
Csp6I GTAC 5 cut(s) 124, 554, 623, 953, 1356
CviQI GTAC 5 cut(s) 124, 554, 623, 953, 1356
DdeI CTNAG 7 cut(s) 18, 259, 607, 1022, 1109, 1218, 1442
DpnI GATC 5 cut(s) 178, 219, 412, 462, 1499
DpnII GATC 5 cut(s) 176, 217, 410, 460, 1497
DraI TTTAAA 1 cut(s) 1290
EaeI YGGCCR 2 cut(s) 43, 1384
EciI GGCGGA 2 cut(s) 71, 663
Eco130I CCWWGG 2 cut(s) 982, 1049
Eco32I GATATC 1 cut(s) 1516
Eco47I GGWCC 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 939, 1477
EcoRV GATATC 1 cut(s) 1516
EcoT14I CCWWGG 2 cut(s) 982, 1049
ErhI CCWWGG 2 cut(s) 982, 1049
FaqI GGGAC 2 cut(s) 1031, 1202
FauI CCCGC 1 cut(s) 924
FbaI TGATCA 2 cut(s) 217, 460
FblI GTMKAC 2 cut(s) 171, 1538
Fnu4HI GCNGC 4 cut(s) 43, 740, 1017, 1131
FokI GGATG 6 cut(s) 207, 349, 463, 652, 776, 1019
Fsp4HI GCNGC 4 cut(s) 43, 740, 1017, 1131
FspBI CTAG 6 cut(s) 149, 512, 1050, 1223, 1401, 1508
GlaI GCGC 1 cut(s) 183
GluI GCNGC 4 cut(s) 43, 740, 1017, 1131
GsaI CCCAGC 1 cut(s) 858
HaeIII GGCC 5 cut(s) 45, 384, 726, 860, 1386
HapII CCGG 2 cut(s) 99, 443
HgaI GACGC 2 cut(s) 11, 68
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 60
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 5 cut(s) 5, 65, 210, 975, 1077
HpaII CCGG 2 cut(s) 99, 443
HphI GGTGA 3 cut(s) 1251, 1319, 1382
Hpy166II GTNNAC 4 cut(s) 172, 256, 895, 1539
Hpy188I TCNGA 9 cut(s) 58, 115, 275, 610, 763, 889, 1425, 1435, 1443
Hpy188III TCNNGA 8 cut(s) 140, 224, 242, 518, 575, 946, 1081, 1271
Hpy8I GTNNAC 4 cut(s) 172, 256, 895, 1539
Hpy99I CGWCG 2 cut(s) 27, 62
HpyAV CCTTC 5 cut(s) 680, 685, 687, 1144, 1313
HpyCH4III ACNGT 4 cut(s) 128, 319, 622, 952
HpyCH4IV ACGT 4 cut(s) 269, 341, 1231, 1311
HpyCH4V TGCA 9 cut(s) 256, 417, 476, 539, 739, 773, 845, 1041, 1488
HpyF3I CTNAG 7 cut(s) 18, 259, 607, 1022, 1109, 1218, 1442
HpySE526I ACGT 4 cut(s) 269, 341, 1231, 1311
Hsp92I GRCGYC 1 cut(s) 60
HspAI GCGC 1 cut(s) 182
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Ksp22I TGATCA 2 cut(s) 217, 460
Kzo9I GATC 5 cut(s) 176, 217, 410, 460, 1497
LmnI GCTCC 1 cut(s) 815
Lsp1109I GCAGC 3 cut(s) 751, 1003, 1117
LweI GCATC 2 cut(s) 511, 1256
MabI ACCWGGT 1 cut(s) 939
MaeI CTAG 6 cut(s) 149, 512, 1050, 1223, 1401, 1508
MaeII ACGT 4 cut(s) 269, 341, 1231, 1311
MaeIII GTNAC 3 cut(s) 697, 1307, 1370
MalI GATC 5 cut(s) 178, 219, 412, 462, 1499
MbiI CCGCTC 1 cut(s) 931
MboI GATC 5 cut(s) 176, 217, 410, 460, 1497
MboII GAAGA 3 cut(s) 899, 1027, 1159
MflI RGATCY 3 cut(s) 176, 410, 1497
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 1 cut(s) 1386
MluCI AATT 7 cut(s) 228, 247, 300, 777, 998, 1470, 1546
MluNI TGGCCA 1 cut(s) 1386
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 6 cut(s) 81, 301, 622, 641, 741, 952
Mox20I TGGCCA 1 cut(s) 1386
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 1386
MseI TTAA 4 cut(s) 1125, 1160, 1203, 1289
MslI CAYNNNNRTG 1 cut(s) 924
Msp20I TGGCCA 1 cut(s) 1386
MspA1I CMGCKG 1 cut(s) 1368
MspI CCGG 2 cut(s) 99, 443
MspR9I CCNGG 2 cut(s) 941, 1479
Mva1269I GAATGC 1 cut(s) 1090
MvaI CCWGG 2 cut(s) 941, 1479
MvnI CGCG 1 cut(s) 184
NaeI GCCGGC 1 cut(s) 100
NdeII GATC 5 cut(s) 176, 217, 410, 460, 1497
NgoMIV GCCGGC 1 cut(s) 98
NlaIV GGNNCC 2 cut(s) 859, 1417
NmuCI GTSAC 2 cut(s) 1307, 1370
NspI RCATGY 1 cut(s) 739
PaeI GCATGC 1 cut(s) 739
PagI TCATGA 2 cut(s) 241, 945
PctI GAATGC 1 cut(s) 1090
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 4 cut(s) 5, 210, 975, 1077
PkrI GCNGC 4 cut(s) 44, 741, 1018, 1132
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PsiI TTATAA 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 939, 1477
PspFI CCCAGC 1 cut(s) 854
PspGI CCWGG 2 cut(s) 939, 1477
PspN4I GGNNCC 2 cut(s) 859, 1417
PspPI GGNCC 3 cut(s) 515, 724, 858
PstI CTGCAG 1 cut(s) 1043
PstNI CAGNNNCTG 2 cut(s) 359, 524
PsuI RGATCY 3 cut(s) 176, 410, 1497
RsaI GTAC 5 cut(s) 125, 555, 624, 954, 1357
RsaNI GTAC 5 cut(s) 124, 554, 623, 953, 1356
RseI CAYNNNNRTG 1 cut(s) 924
SaqAI TTAA 4 cut(s) 1125, 1160, 1203, 1289
SatI GCNGC 4 cut(s) 43, 740, 1017, 1131
Sau3AI GATC 5 cut(s) 176, 217, 410, 460, 1497
Sau96I GGNCC 3 cut(s) 515, 724, 858
ScaI AGTACT 1 cut(s) 1357
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 941, 1479
SduI GDGCHC 1 cut(s) 258
SexAI ACCWGGT 1 cut(s) 939
SfaNI GCATC 2 cut(s) 511, 1256
SfcI CTRYAG 1 cut(s) 1039
SgrAI CRCCGGYG 1 cut(s) 98
SinI GGWCC 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 924
SpeI ACTAGT 1 cut(s) 1507
SphI GCATGC 1 cut(s) 739
Sse9I AATT 7 cut(s) 228, 247, 300, 777, 998, 1470, 1546
SsiI CCGC 7 cut(s) 42, 82, 96, 674, 931, 1368, 1413
SspI AATATT 1 cut(s) 287
SspMI CTAG 6 cut(s) 149, 512, 1050, 1223, 1401, 1508
StyD4I CCNGG 2 cut(s) 939, 1477
StyI CCWWGG 2 cut(s) 982, 1049
TaaI ACNGT 4 cut(s) 128, 319, 622, 952
TaiI ACGT 4 cut(s) 272, 344, 1234, 1314
TaqI TCGA 2 cut(s) 30, 309
TaqII GACCGA 2 cut(s) 354, 1349
TasI AATT 7 cut(s) 228, 247, 300, 777, 998, 1470, 1546
TatI WGTACW 2 cut(s) 553, 1355
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 4 cut(s) 5, 210, 975, 1077
Tru1I TTAA 4 cut(s) 1125, 1160, 1203, 1289
Tru9I TTAA 4 cut(s) 1125, 1160, 1203, 1289
TscAI CASTG 2 cut(s) 133, 1048
TseFI GTSAC 2 cut(s) 1307, 1370
TseI GCWGC 3 cut(s) 739, 1016, 1130
Tsp45I GTSAC 2 cut(s) 1307, 1370
TspDTI ATGAA 5 cut(s) 230, 669, 1010, 1332, 1505
TspRI CASTG 2 cut(s) 133, 1048
VneI GTGCAC 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 515
XapI RAATTY 2 cut(s) 300, 1470
XceI RCATGY 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 1182
XmaJI CCTAGG 1 cut(s) 1049
XmiI GTMKAC 2 cut(s) 171, 1538
XspI CTAG 6 cut(s) 149, 512, 1050, 1223, 1401, 1508
ZrmI AGTACT 1 cut(s) 1357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.