Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007659

Physical Location & Seq

Genomic Coordinates Forward (+)

24034180 .. 24038664

Gene Structure 4485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0144400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTACAGCGACCTACCCACCTCCACCACCATATTATAAGCTATACAAAGATTACTTGCAAGATCCCAAATCCGCTCCTGAGCCGCCGCCACCAATTGAAGGGACATACATTTGCTATGGTGCTAATTACACCACAGATGACGTGCTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGATTTTAAGAAGGAACTAAGGTCCCTTAACAGAGAATTGCAGCTGCACATTTTGGAACTCGCTGATATTCTCGTGGAGAGACCATCACAATATGCAAGGAGAGTGGAAGAAATATCTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGGCCCCATCAGGCCAGGGCAACACTAATTCACATTCTAGAACTTCAGATAAAACGACGGAAACAAGCTGTTGAGGATATAAAGAGGAGGAGAGAAGAAGCACAGGCACTTCTGAAGGAGTCCCTTGAATCATTGGAGGACACTGGTGCATCTCTTATGTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

175

Amino Acids

20.27

Weight (kDa)

6.98

Isoelectric Point (pI)

78.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	4 - 158	1.5e-45	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05970
fragaria_vesca	FvH4_4g15110 FvH4_6g05940
malus_domestica	MD13G1188800.v1.1 MD16G1189300.v1.1
prunus_persica	Prupe.1G155800_v2.0.a1
pyrus_communis	pycom13g16310 pycom16g15930
rosa_chinensis	RchiOBHm_Chr4g0416751
rosa_laevigata	RLG00000007955
rosa_multiflora	Rmu_sc0028652.1_g000009 Rmu_sc0028670.1_g000001 Rmu_sc0028671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360620
rosa_rugosa	Rorug04G0144200 Rorug04G0144300 Rorug04G0144400 Rorug04G0144400 Rorug04G0144500
rosa_samantha	Rh4AG207100 Rh4BG204300 Rh4CG218100 Rh4DG204200
rosa_wichuraiana	Rw4G017520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	77
AciI	CCGC	4 cut(s)	75, 86, 89, 361
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	2 cut(s)	389, 494
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	101, 331, 488, 523
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	4 cut(s)	43, 156, 247, 428
AluI	AGCT	4 cut(s)	43, 156, 247, 428
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	3 cut(s)	193, 362, 372
ApeKI	GCWGC	2 cut(s)	244, 247
AspS9I	GGNCC	3 cut(s)	194, 225, 363
AvaII	GGWCC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	234, 256
BccI	CCATC	2 cut(s)	295, 375
BciT130I	CCWGG	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	5 cut(s)	86, 89, 245, 248, 362
BlsI	GCNGC	5 cut(s)	87, 90, 246, 249, 363
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	225
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	194, 225, 363
BmiI	GGNNCC	2 cut(s)	227, 365
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	349, 518
Bpu10I	CCTNAGC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	508
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	2 cut(s)	460, 463
BseXI	GCAGC	2 cut(s)	234, 256
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	195, 364, 374
BslFI	GGGAC	3 cut(s)	118, 211, 466
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	3 cut(s)	118, 211, 466
BsnI	GGCC	3 cut(s)	195, 364, 374
Bso31I	GGTCTC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	4 cut(s)	75, 86, 89, 361
BspANI	GGCC	3 cut(s)	195, 364, 374
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	227, 365
BspPI	GGATC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	277
BsrBI	CCGCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	1 cut(s)	64
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	81, 221
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	234, 256
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	195, 364, 374
BtrI	CACGTC	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	501
Cfr13I	GGNCC	3 cut(s)	194, 225, 363
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	184
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviJI	RGCY	9 cut(s)	5, 43, 85, 156, 195, 247, 364, 374, 428
CviKI_1	RGCY	9 cut(s)	5, 43, 85, 156, 195, 247, 364, 374, 428
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	81, 221
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	389, 494
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	374
FaiI	YATR	9 cut(s)	34, 39, 46, 109, 120, 297, 326, 440, 518
FaqI	GGGAC	3 cut(s)	118, 211, 466
Fnu4HI	GCNGC	5 cut(s)	86, 89, 245, 248, 362
Fsp4HI	GCNGC	5 cut(s)	86, 89, 245, 248, 362
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	5 cut(s)	86, 89, 245, 248, 362
HaeIII	GGCC	3 cut(s)	195, 364, 374
HgaI	GACGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	2 cut(s)	479, 488
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	351, 408, 474
Hpy188III	TCNNGA	3 cut(s)	80, 331, 398
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	3 cut(s)	95, 208, 469
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	6 cut(s)	61, 244, 250, 299, 340, 509
HpyF3I	CTNAG	2 cut(s)	81, 221
HpySE526I	ACGT	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	7 cut(s)	93, 152, 356, 361, 388, 449, 489
Lsp1109I	GCAGC	2 cut(s)	234, 256
LweI	GCATC	2 cut(s)	349, 518
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	144
MalI	GATC	1 cut(s)	66
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	1 cut(s)	64
MboII	GAAGA	4 cut(s)	173, 323, 338, 467
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	4 cut(s)	96, 127, 239, 387
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	5 cut(s)	33, 427, 438, 441, 490
MseI	TTAA	2 cut(s)	210, 231
MspA1I	CMGCKG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	376
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	376
NdeII	GATC	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	227, 365
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	5 cut(s)	87, 90, 246, 249, 363
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PpuMI	RGGWCCY	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	227, 365
PspPI	GGNCC	3 cut(s)	194, 225, 363
PspPPI	RGGWCCY	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	210, 231
SatI	GCNGC	5 cut(s)	86, 89, 245, 248, 362
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	3 cut(s)	194, 225, 363
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	376
SetI	ASST	8 cut(s)	17, 25, 45, 147, 158, 227, 249, 430
SfaNI	GCATC	2 cut(s)	349, 518
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	225
Sse9I	AATT	4 cut(s)	96, 127, 239, 387
SsiI	CCGC	4 cut(s)	75, 86, 89, 361
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	183
TaiI	ACGT	1 cut(s)	147
TasI	AATT	4 cut(s)	96, 127, 239, 387
TauI	GCSGC	3 cut(s)	88, 91, 364
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	2 cut(s)	210, 231
Tru9I	TTAA	2 cut(s)	210, 231
TscAI	CASTG	1 cut(s)	508
TseI	GCWGC	2 cut(s)	244, 247
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.