Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028670.1

Orthogroup ID

OG0007659

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3129

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028670.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ggagctgtattgtctcatggaaacttgattgcaagtgttgctggggccacttttggtatccagttctacccctctgatgtttacatatcatatcttcctttggcacacatatatgagcgggctaaccaggtcatgacggtacattttggagttgctgttggattctaccaaggggataatatgaaattgatggatgatatggctgctctaagaccaactatcttctgcagtgtccctaggctgtataacagaatatatgctggaatcacgaatgctgtaaagacatcaggtgtgctgagggagaggctatttaatgctgcttacaatgccaagaagaaggcattattaagtggaaaaaatccatctcccatgtgggacaggttggtgtttaataagataaaggctaagctaggaggacgtgttcgttttatggcatcaggtgcttcacccttgtctcctgatgttatggactttttaaaaatatgctttgggggtgacgtaaatgaagggtatggaatgaccgagacttcctgtgttattagtactatggacagcggtgacaacatatctggccatgttggctctcctagtccagcttgcggtgccattccgattgtatctgattgtctgagctatcatgtctttactgatggacgaattttgcctggacattgcatgaaaaagatccaaaaactagtggatatcatggataagttgtggttgtatacttgtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

245

Amino Acids

26.68

Weight (kDa)

8.91

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05970
fragaria_vesca	FvH4_4g15110 FvH4_6g05940
malus_domestica	MD13G1188800.v1.1 MD16G1189300.v1.1
prunus_persica	Prupe.1G155800_v2.0.a1
pyrus_communis	pycom13g16310 pycom16g15930
rosa_chinensis	RchiOBHm_Chr4g0416751
rosa_laevigata	RLG00000007955
rosa_multiflora	Rmu_sc0028652.1_g000009 Rmu_sc0028670.1_g000001 Rmu_sc0028671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360620
rosa_rugosa	Rorug04G0144200 Rorug04G0144300 Rorug04G0144400 Rorug04G0144400 Rorug04G0144500
rosa_samantha	Rh4AG207100 Rh4BG204300 Rh4CG218100 Rh4DG204200
rosa_wichuraiana	Rw4G017520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	725
AciI	CCGC	3 cut(s)	118, 555, 600
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	657
AfaI	GTAC	2 cut(s)	141, 544
AfiI	CCNNNNNNNGG	1 cut(s)	599
AflIII	ACRYGT	1 cut(s)	418
AhlI	ACTAGT	1 cut(s)	694
AjiI	CACGTC	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	126, 664
AloI	GAACNNNNNNTCC	2 cut(s)	405, 437
AluBI	AGCT	4 cut(s)	5, 409, 596, 633
AluI	AGCT	4 cut(s)	5, 409, 596, 633
Alw26I	GTCTC	3 cut(s)	18, 459, 518
AlwI	GGATC	1 cut(s)	679
AoxI	GGCC	2 cut(s)	45, 571
ApeKI	GCWGC	2 cut(s)	203, 317
ApoI	RAATTY	1 cut(s)	657
AspA2I	CCTAGG	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	438, 506, 569
AvrII	CCTAGG	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	602
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	190, 304
BccI	CCATC	3 cut(s)	184, 370, 644
BciT130I	CCWGG	2 cut(s)	128, 666
BciVI	GTATCC	1 cut(s)	68
BcoDI	GTCTC	3 cut(s)	18, 459, 518
BcuI	ACTAGT	1 cut(s)	694
BfaI	CTAG	4 cut(s)	237, 410, 588, 695
BfmI	CTRYAG	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	68
BglI	GCCNNNNNGGC	1 cut(s)	579
BisI	GCNGC	2 cut(s)	204, 318
BlnI	CCTAGG	1 cut(s)	236
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	2 cut(s)	205, 319
BmcAI	AGTACT	1 cut(s)	544
Bme1390I	CCNGG	2 cut(s)	128, 666
BmgBI	CACGTC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	46, 604
BmrFI	CCNGG	2 cut(s)	128, 666
BmsI	GCATC	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	296
Bpu1102I	GCTNAGC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	169, 236
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 405, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	128, 666
BseDI	CCNNGG	2 cut(s)	169, 236
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	2 cut(s)	287, 620
BseNI	ACTGG	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	190, 304
BseYI	CCCAGC	1 cut(s)	41
BshFI	GGCC	2 cut(s)	47, 573
BshNI	GGYRCC	1 cut(s)	602
BslFI	GGGAC	2 cut(s)	218, 389
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	3 cut(s)	18, 459, 518
BsmFI	GGGAC	2 cut(s)	218, 389
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	47, 573
Bsp143I	GATC	1 cut(s)	684
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	3 cut(s)	118, 555, 600
BspANI	GGCC	2 cut(s)	47, 573
BspCNI	CTCAG	2 cut(s)	288, 621
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	46, 604
BspMAI	CTGCAG	1 cut(s)	230
BspPI	GGATC	1 cut(s)	679
BspT107I	GGYRCC	1 cut(s)	602
BsrBI	CCGCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	670
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	169, 236
BssMI	GATC	1 cut(s)	684
BssNAI	GTATAC	1 cut(s)	726
BssT1I	CCWWGG	2 cut(s)	169, 236
Bst1107I	GTATAC	1 cut(s)	726
Bst2UI	CCWGG	2 cut(s)	128, 666
Bst4CI	ACNGT	1 cut(s)	139
BstAPI	GCANNNNNTGC	2 cut(s)	38, 440
BstC8I	GCNNGC	2 cut(s)	120, 598
BstDEI	CTNAG	4 cut(s)	209, 296, 405, 629
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	687
BstMAI	GTCTC	3 cut(s)	18, 459, 518
BstMBI	GATC	1 cut(s)	684
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 326, 440, 579, 602
BstNI	CCWGG	2 cut(s)	128, 666
BstSCI	CCNGG	2 cut(s)	126, 664
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	190, 304
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BstZ17I	GTATAC	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	47, 573
BtrI	CACGTC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	120, 598
CciI	TCATGA	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	45
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	140, 543
CviAII	CATG	7 cut(s)	17, 133, 370, 575, 638, 676, 706
CviQI	GTAC	2 cut(s)	140, 543
DdeI	CTNAG	4 cut(s)	209, 296, 405, 629
DpnI	GATC	1 cut(s)	686
DpnII	GATC	1 cut(s)	684
DraI	TTTAAA	1 cut(s)	477
EaeI	YGGCCR	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	169, 236
Eco32I	GATATC	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	126, 664
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	169, 236
ErhI	CCWWGG	2 cut(s)	169, 236
FaeI	CATG	7 cut(s)	20, 136, 373, 578, 641, 679, 709
FaqI	GGGAC	2 cut(s)	218, 389
FatI	CATG	7 cut(s)	16, 132, 369, 574, 637, 675, 705
FauI	CCCGC	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	2 cut(s)	204, 318
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	204, 318
FspBI	CTAG	4 cut(s)	237, 410, 588, 695
GluI	GCNGC	2 cut(s)	204, 318
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	47, 573
Hin1II	CATG	7 cut(s)	20, 136, 373, 578, 641, 679, 709
HinfI	GANTC	2 cut(s)	162, 264
HphI	GGTGA	3 cut(s)	438, 506, 569
Hpy166II	GTNNAC	2 cut(s)	82, 726
Hpy188I	TCNGA	4 cut(s)	76, 612, 622, 630
Hpy188III	TCNNGA	3 cut(s)	133, 268, 458
Hpy8I	GTNNAC	2 cut(s)	82, 726
HpyAV	CCTTC	2 cut(s)	331, 500
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	418, 498
HpyCH4V	TGCA	3 cut(s)	32, 228, 675
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 326, 440, 579, 602
HpyF3I	CTNAG	4 cut(s)	209, 296, 405, 629
HpySE526I	ACGT	2 cut(s)	418, 498
Hsp92II	CATG	7 cut(s)	20, 136, 373, 578, 641, 679, 709
Kzo9I	GATC	1 cut(s)	684
Lsp1109I	GCAGC	2 cut(s)	190, 304
LweI	GCATC	1 cut(s)	443
MabI	ACCWGGT	1 cut(s)	126
MaeI	CTAG	4 cut(s)	237, 410, 588, 695
MaeII	ACGT	2 cut(s)	418, 498
MaeIII	GTNAC	2 cut(s)	494, 557
MalI	GATC	1 cut(s)	686
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	1 cut(s)	684
MboII	GAAGA	3 cut(s)	86, 214, 346
MflI	RGATCY	1 cut(s)	684
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	3 cut(s)	185, 657, 733
MluNI	TGGCCA	1 cut(s)	573
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	82, 291, 297, 407
Mox20I	TGGCCA	1 cut(s)	573
MscI	TGGCCA	1 cut(s)	573
MseI	TTAA	4 cut(s)	312, 347, 390, 476
MslI	CAYNNNNRTG	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	555
MspR9I	CCNGG	2 cut(s)	128, 666
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	2 cut(s)	128, 666
MwoI	GCNNNNNNNGC	5 cut(s)	38, 326, 440, 579, 602
NdeII	GATC	1 cut(s)	684
NlaIII	CATG	7 cut(s)	20, 136, 373, 578, 641, 679, 709
NlaIV	GGNNCC	2 cut(s)	46, 604
NmuCI	GTSAC	2 cut(s)	494, 557
PagI	TCATGA	1 cut(s)	132
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	162, 264
PkrI	GCNGC	2 cut(s)	205, 319
Psp6I	CCWGG	2 cut(s)	126, 664
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	2 cut(s)	126, 664
PspN4I	GGNNCC	2 cut(s)	46, 604
PspPI	GGNCC	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	684
RsaI	GTAC	2 cut(s)	141, 544
RsaNI	GTAC	2 cut(s)	140, 543
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	4 cut(s)	312, 347, 390, 476
SatI	GCNGC	2 cut(s)	204, 318
Sau3AI	GATC	1 cut(s)	684
Sau96I	GGNCC	1 cut(s)	45
ScaI	AGTACT	1 cut(s)	544
ScrFI	CCNGG	2 cut(s)	128, 666
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	111
SpeI	ACTAGT	1 cut(s)	694
Sse9I	AATT	3 cut(s)	185, 657, 733
SsiI	CCGC	3 cut(s)	118, 555, 600
SspMI	CTAG	4 cut(s)	237, 410, 588, 695
StyD4I	CCNGG	2 cut(s)	126, 664
StyI	CCWWGG	2 cut(s)	169, 236
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	421, 501
TaqII	GACCGA	1 cut(s)	536
TasI	AATT	3 cut(s)	185, 657, 733
TatI	WGTACW	1 cut(s)	542
TfiI	GAWTC	2 cut(s)	162, 264
Tru1I	TTAA	4 cut(s)	312, 347, 390, 476
Tru9I	TTAA	4 cut(s)	312, 347, 390, 476
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	2 cut(s)	494, 557
TseI	GCWGC	2 cut(s)	203, 317
Tsp45I	GTSAC	2 cut(s)	494, 557
TspDTI	ATGAA	3 cut(s)	197, 519, 692
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	369
XmaJI	CCTAGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	725
XspI	CTAG	4 cut(s)	237, 410, 588, 695
ZrmI	AGTACT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.