Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007659

Physical Location & Seq

Genomic Coordinates Reverse (-)

49635857 .. 49647438

Gene Structure 11582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG207100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGGATTCCACTCCAGCTCAGCGTCGCCTCGAAGCCATTAACGGCCACCTCATCTCCGACGCCGACTCCCTCTCCATTCTCCGCCCCAACGCCACCGCCGGCGAGTTCGTTTCCGAGCAAGGGTACAGTGTGGTGCTTCCAGAGAAACTAGATACAGGAAAATGGAATGTATACAGATCTGCGCGTTCTCCTTTGAAGCTTGTTAGTAGATTCCCTGATCATCCCGAAATTGCTACGCTTCATGATAATTTTGTGCACTCAGTTGATACGTTCAGAGATTACAAATATTTGGGAACAAGAATTCGGGTCGATGGAACAGTTGGAGAATACAAATGGATGACGTTTGGAGAAGCAGATACTGCTCGGTCAGCAATAGGTTCTGGCCTCATATATCATGGGATACCAAAGGGATCTTGCATTGGGTTGTATTTTATAAACAGACCGGAGTGGATGATTGTTGATCATGCCTGCTCTGCATATTCTTTCATATCAGTTCCTTTGTATGACACACTAGGTCCAGATGCTGTCAAATACATTGCAAATCATGCTGTTGTACAAGTTATATTTTGCGTTCCCGAAACATTGAATAGTATATTGAGCTTTCTCTCAGATATTCCAACCGTACGCCTCATTGTGGTTGTTGGAGGCATAGATGAACAAATACCATCCCTTCCGCCTTCAACGGGAGTGAAGGTTGTAACATATTCAACATTGCTCAATCAGGGCCGTAGTAGCATGCAGCCTTTCTGCCCACCAAAGTCGGATGATATTGCAACAATTTGCTACACAAGTGGCACAACTGGCACTCCAAAGGGAGCTGTATTGTCTCATGGAAACTTGATTGCAAGTGTTGCTGGGGCCACTTTTGGTATCCAGTTCTACCCCTCTGATGTTTACATATCATATCTTCCTTTGGCACACATATATGAGCGGGCTAACCAGGTCATGACGGTACATTTTGGAGTTGCTGTTGGATTCTACCAAGGGGATAATATGAAATTGATGGATGATATGGCTGCTCTAAGACCTACTATCTTCTGCAGTGTCCCTAGGCTGTATAACAGAATATATGCTGGAATCACGAATGCTGTAAAGACATCAGGTGTGCTGAGGGAGAGGCTATTTAATGCTGCTTACAATGCCAAGAAGAAGGCATTATTAAGTGGAAAAAATCCATCTCCCATGTGGGACAGGTTGGTGTTTAATAAGATAAAGGCTAAGCTAGGAGGACGTGTTCGTTTTATGGCATCAGGTGCTTCACCCTTGTCTCCTGATGTTATGGACTTTTTAAAAATATGCTTTGGGGGTGACGTAAATGAAGGGTATGGAATGACCGAGACTTCCTGTGTTATTAGTACTATGGACAGCGGTGACAACATATCTGGCCATGTTGGCTCTCCTAGTCCAGCTTGCGAAATCAAGCTGGTTGATGTACCAGAAATGAACTACACGTGTGATGATCAACCCTATCCACGCGGTGAAATCTGTGTCAGGGGTCCTATTATTTTTCAGGGCTATCACAAAGATGAAGTGCAGACGAGAGAAGTCATTGATGAAGATGGGTGGCTTCATACTGGAGACATTGGGTCATGGTTACCTGGTGGTCGTCTGAAAATTATTGATAGGAAGAAGAACATTTTCAAGTTGGCACAGGGAGAGTATATAGCTCCAGAAAAAATTGAGAATGTTTATGCCAAGTGCAAGTTTGTTGCCCAGTGCTTTGTACATGGGGACAGCCTAAATTCTTCTTTGGTAGCAATTGTCTCAGTTGACCCAGATATGTTGAACGCATGGGCTGATTCTGAAGGCATAAAGTATGAAGATTTAGGGCGACTGTGTAATGATCCAAGAGCAAGGGCTACTGTATTGGCTGATATGGATGCTATTGGCAGGGAAGCTCAGGTAAGTTTTCAATTGCTATTGTCTTGCACGTTGTTCATACTTTTCATGTTAAATTCTGAAATATATAATTATATATACCTTTCAGTTGAGAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

666

Amino Acids

73.39

Weight (kDa)

5.91

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	108 - 507	1.5e-85	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05970
fragaria_vesca	FvH4_4g15110 FvH4_6g05940
malus_domestica	MD13G1188800.v1.1 MD16G1189300.v1.1
prunus_persica	Prupe.1G155800_v2.0.a1
pyrus_communis	pycom13g16310 pycom16g15930
rosa_chinensis	RchiOBHm_Chr4g0416751
rosa_laevigata	RLG00000007955
rosa_multiflora	Rmu_sc0028652.1_g000009 Rmu_sc0028670.1_g000001 Rmu_sc0028671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360620
rosa_rugosa	Rorug04G0144200 Rorug04G0144300 Rorug04G0144400 Rorug04G0144400 Rorug04G0144500
rosa_samantha	Rh4AG207100 Rh4BG204300 Rh4CG218100 Rh4DG204200
rosa_wichuraiana	Rw4G017520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	2 cut(s)	184, 1476
AciI	CCGC	6 cut(s)	82, 96, 674, 931, 1368, 1476
AclWI	GGATC	2 cut(s)	418, 1838
AcoI	YGGCCR	2 cut(s)	43, 1384
AcsI	RAATTY	3 cut(s)	300, 1741, 1954
AcuI	CTGAAG	1 cut(s)	1824
AcvI	CACGTG	1 cut(s)	1452
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	1478
AfaI	GTAC	7 cut(s)	125, 555, 624, 954, 1357, 1434, 1725
AfiI	CCNNNNNNNGG	3 cut(s)	120, 634, 683
AflIII	ACRYGT	3 cut(s)	1231, 1449, 1451
AgsI	TTSAA	7 cut(s)	196, 586, 681, 708, 1642, 1786, 1913
AhdI	GACNNNNNGTC	1 cut(s)	1585
AjiI	CACGTC	1 cut(s)	1232
AjnI	CCWGG	2 cut(s)	939, 1597
AloI	GAACNNNNNNTCC	2 cut(s)	1218, 1250
AluBI	AGCT	9 cut(s)	17, 199, 600, 818, 1222, 1409, 1423, 1667, 1898
AluI	AGCT	9 cut(s)	17, 199, 600, 818, 1222, 1409, 1423, 1667, 1898
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	5 cut(s)	831, 1272, 1331, 1572, 1768
Alw44I	GTGCAC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	418, 1838
AlwNI	CAGNNNCTG	2 cut(s)	359, 524
AoxI	GGCC	5 cut(s)	43, 382, 724, 858, 1384
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	739, 1016, 1130
ApoI	RAATTY	3 cut(s)	300, 1741, 1954
Asp700I	GAANNNNTTC	1 cut(s)	1637
AspA2I	CCTAGG	1 cut(s)	1049
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	4 cut(s)	515, 724, 858, 1496
AsuHPI	GGTGA	4 cut(s)	1251, 1319, 1382, 1490
AvaII	GGWCC	2 cut(s)	515, 1496
AvrII	CCTAGG	1 cut(s)	1049
BaeGI	GKGCMC	1 cut(s)	258
BalI	TGGCCA	1 cut(s)	1386
BbrPI	CACGTG	1 cut(s)	1452
Bbv12I	GWGCWC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	1109
BbvI	GCAGC	3 cut(s)	751, 1003, 1117
BccI	CCATC	5 cut(s)	305, 673, 997, 1183, 1553
BceAI	ACGGC	2 cut(s)	58, 711
BciT130I	CCWGG	2 cut(s)	941, 1599
BciVI	GTATCC	2 cut(s)	393, 881
BclI	TGATCA	3 cut(s)	217, 460, 1459
BcoDI	GTCTC	5 cut(s)	831, 1272, 1331, 1572, 1768
BfaI	CTAG	5 cut(s)	149, 512, 1050, 1223, 1401
BfmI	CTRYAG	1 cut(s)	1039
BfuI	GTATCC	2 cut(s)	393, 881
BglI	GCCNNNNNGGC	1 cut(s)	1392
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	3 cut(s)	740, 1017, 1131
BlnI	CCTAGG	1 cut(s)	1049
BlpI	GCTNAGC	2 cut(s)	18, 1218
BlsI	GCNGC	3 cut(s)	741, 1018, 1132
BmcAI	AGTACT	1 cut(s)	1357
Bme1390I	CCNGG	2 cut(s)	941, 1599
Bme18I	GGWCC	2 cut(s)	515, 1496
BmeRI	GACNNNNNGTC	1 cut(s)	1585
BmgBI	CACGTC	1 cut(s)	1232
BmgT120I	GGNCC	4 cut(s)	515, 724, 858, 1496
BmiI	GGNNCC	2 cut(s)	859, 1497
BmrFI	CCNGG	2 cut(s)	941, 1599
BmrI	ACTGGG	1 cut(s)	1708
BmsI	GCATC	3 cut(s)	511, 1256, 1870
BmuI	ACTGGG	1 cut(s)	1708
BpmI	CTGGAG	2 cut(s)	1596, 1653
Bpu10I	CCTNAGC	2 cut(s)	1109, 1899
Bpu1102I	GCTNAGC	2 cut(s)	18, 1218
BsaAI	YACGTR	1 cut(s)	1452
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	982, 1049
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 634, 683
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	4 cut(s)	805, 874, 1579, 1714
Bse3DI	GCAATG	2 cut(s)	534, 710
BseBI	CCWGG	2 cut(s)	941, 1599
BseDI	CCNNGG	2 cut(s)	982, 1049
BseGI	GGATG	7 cut(s)	220, 342, 456, 665, 769, 1012, 1885
BseLI	CCNNNNNNNGG	3 cut(s)	120, 634, 683
BseMI	GCAATG	2 cut(s)	534, 710
BseMII	CTCAG	6 cut(s)	32, 273, 621, 1100, 1779, 1913
BseNI	ACTGG	4 cut(s)	805, 874, 1579, 1714
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	751, 1003, 1117
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	1553
Bsh1236I	CGCG	2 cut(s)	184, 1476
BshFI	GGCC	5 cut(s)	45, 384, 726, 860, 1386
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	99, 443
BsiWI	CGTACG	1 cut(s)	622
BslFI	GGGAC	3 cut(s)	1031, 1202, 1745
BslI	CCNNNNNNNGG	3 cut(s)	120, 634, 683
BsmAI	GTCTC	5 cut(s)	831, 1272, 1331, 1572, 1768
BsmFI	GGGAC	3 cut(s)	1031, 1202, 1745
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	5 cut(s)	45, 384, 726, 860, 1386
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp1407I	TGTACA	2 cut(s)	553, 1723
Bsp143I	GATC	6 cut(s)	176, 217, 410, 460, 1459, 1843
Bsp1720I	GCTNAGC	2 cut(s)	18, 1218
BspACI	CCGC	6 cut(s)	82, 96, 674, 931, 1368, 1476
BspANI	GGCC	5 cut(s)	45, 384, 726, 860, 1386
BspCNI	CTCAG	6 cut(s)	31, 272, 620, 1101, 1778, 1912
BspFNI	CGCG	2 cut(s)	184, 1476
BspHI	TCATGA	2 cut(s)	241, 945
BspLI	GGNNCC	2 cut(s)	859, 1497
BspMAI	CTGCAG	1 cut(s)	1043
BspPI	GGATC	2 cut(s)	418, 1838
BsrBI	CCGCTC	1 cut(s)	931
BsrDI	GCAATG	2 cut(s)	534, 710
BsrFI	RCCGGY	1 cut(s)	98
BsrGI	TGTACA	2 cut(s)	553, 1723
BsrI	ACTGG	4 cut(s)	805, 874, 1579, 1714
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	982, 1049
BssMI	GATC	6 cut(s)	176, 217, 410, 460, 1459, 1843
BssNAI	GTATAC	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	2 cut(s)	982, 1049
Bst1107I	GTATAC	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	941, 1599
Bst4CI	ACNGT	6 cut(s)	128, 319, 622, 952, 1836, 1864
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	4 cut(s)	359, 545, 851, 1253
BstAUI	TGTACA	2 cut(s)	553, 1723
BstBAI	YACGTR	1 cut(s)	1452
BstC8I	GCNNGC	5 cut(s)	100, 469, 737, 933, 1411
BstDEI	CTNAG	8 cut(s)	18, 259, 607, 1022, 1109, 1218, 1765, 1899
BstEII	GGTNACC	1 cut(s)	1593
BstF5I	GGATG	7 cut(s)	220, 342, 456, 665, 769, 1012, 1885
BstFNI	CGCG	2 cut(s)	184, 1476
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	6 cut(s)	179, 220, 413, 463, 1462, 1846
BstMAI	GTCTC	5 cut(s)	831, 1272, 1331, 1572, 1768
BstMBI	GATC	6 cut(s)	176, 217, 410, 460, 1459, 1843
BstNI	CCWGG	2 cut(s)	941, 1599
BstNSI	RCATGY	1 cut(s)	739
BstPI	GGTNACC	1 cut(s)	1593
BstSCI	CCNGG	2 cut(s)	939, 1597
BstSFI	CTRYAG	1 cut(s)	1039
BstSLI	GKGCMC	1 cut(s)	258
BstUI	CGCG	2 cut(s)	184, 1476
BstV1I	GCAGC	3 cut(s)	751, 1003, 1117
BstX2I	RGATCY	2 cut(s)	176, 410
BstYI	RGATCY	2 cut(s)	176, 410
BstZ17I	GTATAC	1 cut(s)	172
BsuI	GTATCC	2 cut(s)	393, 881
BsuRI	GGCC	5 cut(s)	45, 384, 726, 860, 1386
BtrI	CACGTC	1 cut(s)	1232
BtsCI	GGATG	7 cut(s)	220, 342, 456, 665, 769, 1012, 1885
BtsI	GCAGTG	1 cut(s)	1048
BtsIMutI	CAGTG	3 cut(s)	133, 1048, 1721
Cac8I	GCNNGC	5 cut(s)	100, 469, 737, 933, 1411
CaiI	CAGNNNCTG	2 cut(s)	359, 524
CciI	TCATGA	2 cut(s)	241, 945
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	4 cut(s)	515, 724, 858, 1496
CseI	GACGC	2 cut(s)	11, 68
CsiI	ACCWGGT	2 cut(s)	939, 1597
Csp6I	GTAC	7 cut(s)	124, 554, 623, 953, 1356, 1433, 1724
CviQI	GTAC	7 cut(s)	124, 554, 623, 953, 1356, 1433, 1724
DdeI	CTNAG	8 cut(s)	18, 259, 607, 1022, 1109, 1218, 1765, 1899
DpnI	GATC	6 cut(s)	178, 219, 412, 462, 1461, 1845
DpnII	GATC	6 cut(s)	176, 217, 410, 460, 1459, 1843
DraI	TTTAAA	1 cut(s)	1290
DraIII	CACNNNGTG	1 cut(s)	1478
DriI	GACNNNNNGTC	1 cut(s)	1585
EaeI	YGGCCR	2 cut(s)	43, 1384
Eam1105I	GACNNNNNGTC	1 cut(s)	1585
EciI	GGCGGA	2 cut(s)	71, 663
Eco130I	CCWWGG	2 cut(s)	982, 1049
Eco47I	GGWCC	2 cut(s)	515, 1496
Eco57I	CTGAAG	1 cut(s)	1824
Eco72I	CACGTG	1 cut(s)	1452
Eco91I	GGTNACC	1 cut(s)	1593
EcoO109I	RGGNCCY	1 cut(s)	1496
EcoO65I	GGTNACC	1 cut(s)	1593
EcoRI	GAATTC	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	939, 1597
EcoT14I	CCWWGG	2 cut(s)	982, 1049
ErhI	CCWWGG	2 cut(s)	982, 1049
FaqI	GGGAC	3 cut(s)	1031, 1202, 1745
FauI	CCCGC	1 cut(s)	924
FbaI	TGATCA	3 cut(s)	217, 460, 1459
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	740, 1017, 1131
FokI	GGATG	7 cut(s)	207, 349, 463, 652, 776, 1019, 1892
Fsp4HI	GCNGC	3 cut(s)	740, 1017, 1131
FspBI	CTAG	5 cut(s)	149, 512, 1050, 1223, 1401
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	3 cut(s)	740, 1017, 1131
GsaI	CCCAGC	1 cut(s)	858
GsuI	CTGGAG	2 cut(s)	1596, 1653
HaeIII	GGCC	5 cut(s)	45, 384, 726, 860, 1386
HapII	CCGG	2 cut(s)	99, 443
HgaI	GACGC	2 cut(s)	11, 68
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	1771
HindII	GTYRAC	1 cut(s)	1771
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	6 cut(s)	5, 65, 210, 975, 1077, 1799
HpaII	CCGG	2 cut(s)	99, 443
HphI	GGTGA	4 cut(s)	1251, 1319, 1382, 1490
Hpy166II	GTNNAC	4 cut(s)	172, 256, 895, 1771
Hpy188I	TCNGA	9 cut(s)	58, 115, 275, 610, 763, 889, 1611, 1804, 1960
Hpy188III	TCNNGA	9 cut(s)	140, 224, 242, 518, 575, 946, 1081, 1271, 1670
Hpy8I	GTNNAC	4 cut(s)	172, 256, 895, 1771
Hpy99I	CGWCG	2 cut(s)	27, 62
HpyAV	CCTTC	6 cut(s)	680, 685, 687, 1144, 1313, 1799
HpyCH4III	ACNGT	6 cut(s)	128, 319, 622, 952, 1836, 1864
HpyCH4IV	ACGT	6 cut(s)	269, 341, 1231, 1311, 1451, 1931
HpyF3I	CTNAG	8 cut(s)	18, 259, 607, 1022, 1109, 1218, 1765, 1899
HpySE526I	ACGT	6 cut(s)	269, 341, 1231, 1311, 1451, 1931
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	1 cut(s)	182
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Ksp22I	TGATCA	3 cut(s)	217, 460, 1459
Kzo9I	GATC	6 cut(s)	176, 217, 410, 460, 1459, 1843
LmnI	GCTCC	2 cut(s)	815, 1672
Lsp1109I	GCAGC	3 cut(s)	751, 1003, 1117
LweI	GCATC	3 cut(s)	511, 1256, 1870
MabI	ACCWGGT	2 cut(s)	939, 1597
MaeI	CTAG	5 cut(s)	149, 512, 1050, 1223, 1401
MaeII	ACGT	6 cut(s)	269, 341, 1231, 1311, 1451, 1931
MaeIII	GTNAC	4 cut(s)	697, 1307, 1370, 1593
MalI	GATC	6 cut(s)	178, 219, 412, 462, 1461, 1845
MbiI	CCGCTC	1 cut(s)	931
MboI	GATC	6 cut(s)	176, 217, 410, 460, 1459, 1843
MboII	GAAGA	8 cut(s)	899, 1027, 1159, 1568, 1639, 1642, 1737, 1832
MfeI	CAATTG	2 cut(s)	1758, 1913
MflI	RGATCY	2 cut(s)	176, 410
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	1386
MluNI	TGGCCA	1 cut(s)	1386
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	6 cut(s)	81, 301, 622, 641, 741, 952
Mox20I	TGGCCA	1 cut(s)	1386
MreI	CGCCGGCG	1 cut(s)	98
MroNI	GCCGGC	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	1637
MscI	TGGCCA	1 cut(s)	1386
MseI	TTAA	6 cut(s)	39, 1125, 1160, 1203, 1289, 1952
MslI	CAYNNNNRTG	2 cut(s)	924, 1524
Msp20I	TGGCCA	1 cut(s)	1386
MspA1I	CMGCKG	1 cut(s)	1368
MspI	CCGG	2 cut(s)	99, 443
MspR9I	CCNGG	2 cut(s)	941, 1599
MunI	CAATTG	2 cut(s)	1758, 1913
Mva1269I	GAATGC	1 cut(s)	1090
MvaI	CCWGG	2 cut(s)	941, 1599
MvnI	CGCG	2 cut(s)	184, 1476
NaeI	GCCGGC	1 cut(s)	100
NdeII	GATC	6 cut(s)	176, 217, 410, 460, 1459, 1843
NgoMIV	GCCGGC	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	859, 1497
NmuCI	GTSAC	2 cut(s)	1307, 1370
NspI	RCATGY	1 cut(s)	739
PaeI	GCATGC	1 cut(s)	739
PagI	TCATGA	2 cut(s)	241, 945
PctI	GAATGC	1 cut(s)	1090
PdiI	GCCGGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	1637
PfeI	GAWTC	5 cut(s)	5, 210, 975, 1077, 1799
Pfl23II	CGTACG	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	741, 1018, 1132
PleI	GAGTC	1 cut(s)	59
PmaCI	CACGTG	1 cut(s)	1452
PmlI	CACGTG	1 cut(s)	1452
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	1452
PpuMI	RGGWCCY	1 cut(s)	1496
PsiI	TTATAA	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	1496
Psp6I	CCWGG	2 cut(s)	939, 1597
PspCI	CACGTG	1 cut(s)	1452
PspEI	GGTNACC	1 cut(s)	1593
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	2 cut(s)	939, 1597
PspLI	CGTACG	1 cut(s)	622
PspN4I	GGNNCC	2 cut(s)	859, 1497
PspPI	GGNCC	4 cut(s)	515, 724, 858, 1496
PspPPI	RGGWCCY	1 cut(s)	1496
PstI	CTGCAG	1 cut(s)	1043
PstNI	CAGNNNCTG	2 cut(s)	359, 524
PsuI	RGATCY	2 cut(s)	176, 410
RsaI	GTAC	7 cut(s)	125, 555, 624, 954, 1357, 1434, 1725
RsaNI	GTAC	7 cut(s)	124, 554, 623, 953, 1356, 1433, 1724
RseI	CAYNNNNRTG	2 cut(s)	924, 1524
SaqAI	TTAA	6 cut(s)	39, 1125, 1160, 1203, 1289, 1952
SatI	GCNGC	3 cut(s)	740, 1017, 1131
Sau3AI	GATC	6 cut(s)	176, 217, 410, 460, 1459, 1843
Sau96I	GGNCC	4 cut(s)	515, 724, 858, 1496
ScaI	AGTACT	1 cut(s)	1357
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	941, 1599
SduI	GDGCHC	1 cut(s)	258
SexAI	ACCWGGT	2 cut(s)	939, 1597
SfaNI	GCATC	3 cut(s)	511, 1256, 1870
SfcI	CTRYAG	1 cut(s)	1039
SgrAI	CRCCGGYG	1 cut(s)	98
SinI	GGWCC	2 cut(s)	515, 1496
SmiMI	CAYNNNNRTG	2 cut(s)	924, 1524
SphI	GCATGC	1 cut(s)	739
SsiI	CCGC	6 cut(s)	82, 96, 674, 931, 1368, 1476
SspI	AATATT	1 cut(s)	287
SspMI	CTAG	5 cut(s)	149, 512, 1050, 1223, 1401
StyD4I	CCNGG	2 cut(s)	939, 1597
StyI	CCWWGG	2 cut(s)	982, 1049
TaaI	ACNGT	6 cut(s)	128, 319, 622, 952, 1836, 1864
TaiI	ACGT	6 cut(s)	272, 344, 1234, 1314, 1454, 1934
TaqI	TCGA	2 cut(s)	30, 309
TaqII	GACCGA	2 cut(s)	354, 1349
TatI	WGTACW	3 cut(s)	553, 1355, 1723
TfiI	GAWTC	5 cut(s)	5, 210, 975, 1077, 1799
Tru1I	TTAA	6 cut(s)	39, 1125, 1160, 1203, 1289, 1952
Tru9I	TTAA	6 cut(s)	39, 1125, 1160, 1203, 1289, 1952
TscAI	CASTG	3 cut(s)	133, 1048, 1721
TseFI	GTSAC	2 cut(s)	1307, 1370
TseI	GCWGC	3 cut(s)	739, 1016, 1130
Tsp45I	GTSAC	2 cut(s)	1307, 1370
TspRI	CASTG	3 cut(s)	133, 1048, 1721
VneI	GTGCAC	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	515, 1496
XapI	RAATTY	3 cut(s)	300, 1741, 1954
XceI	RCATGY	1 cut(s)	739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1182
XmaJI	CCTAGG	1 cut(s)	1049
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	1637
XspI	CTAG	5 cut(s)	149, 512, 1050, 1223, 1401
ZrmI	AGTACT	1 cut(s)	1357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.