Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007659

Physical Location & Seq

Genomic Coordinates Reverse (-)

24030363 .. 24034133

Gene Structure 3771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0144300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAGAGCGCAGCTCAGCCGGCCCAGATTCCGACGAGCTTCGGCAACGAGCTTAGGGCCTGCCTCCGTTGCCGCCTCGTCAAGACCTACGATCAGTTCAGAGAAAACGGATGCGAGAACTGCCCCTTCTTCAAGATGGATGAAGATAGCGACCTGGTCAACGAAGGCACTACTCCCAATTTCAATGGCATCATTTCGGTCATGGATCCTGATAAGAGCTGGGCTGCTAAGTGGCTTCGAATTTCGAGGTTTGTTCCTGGTTGCTACACTCTTGCAGTTTCAGAGGCTCTTTCTGAGGATTTGCAGAATATATGTGAAGATGAGCACGTGCAATATGTACCACCAAAACGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

118

Amino Acids

13.39

Weight (kDa)

4.95

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spt4	PF06093	18 - 94	3.1e-31	Spt4/RpoE2 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05970
fragaria_vesca	FvH4_4g15110 FvH4_6g05940
malus_domestica	MD13G1188800.v1.1 MD16G1189300.v1.1
prunus_persica	Prupe.1G155800_v2.0.a1
pyrus_communis	pycom13g16310 pycom16g15930
rosa_chinensis	RchiOBHm_Chr4g0416751
rosa_laevigata	RLG00000007955
rosa_multiflora	Rmu_sc0028652.1_g000009 Rmu_sc0028670.1_g000001 Rmu_sc0028671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360620
rosa_rugosa	Rorug04G0144200 Rorug04G0144300 Rorug04G0144400 Rorug04G0144400 Rorug04G0144500
rosa_samantha	Rh4AG207100 Rh4BG204300 Rh4CG218100 Rh4DG204200
rosa_wichuraiana	Rw4G017520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	2 cut(s)	200, 213
AcsI	RAATTY	1 cut(s)	240
AcvI	CACGTG	1 cut(s)	328
AfaI	GTAC	1 cut(s)	339
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	133, 184
AjnI	CCWGG	2 cut(s)	153, 256
AluBI	AGCT	4 cut(s)	14, 39, 52, 219
AluI	AGCT	4 cut(s)	14, 39, 52, 219
Alw21I	GWGCWC	1 cut(s)	327
AlwI	GGATC	2 cut(s)	200, 213
AoxI	GGCC	2 cut(s)	21, 57
ApeKI	GCWGC	2 cut(s)	11, 224
ApoI	RAATTY	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	22, 57
AsuII	TTCGAA	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	205
BbrPI	CACGTG	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	23, 211
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	155, 258
BisI	GCNGC	3 cut(s)	12, 73, 225
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	3 cut(s)	13, 74, 226
Bme1390I	CCNGG	2 cut(s)	155, 258
BmgT120I	GGNCC	2 cut(s)	22, 57
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	155, 258
BmsI	GCATC	2 cut(s)	101, 198
BplI	GAGNNNNNCTC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	155, 258
BseGI	GGATG	2 cut(s)	116, 145
BseMII	CTCAG	2 cut(s)	29, 285
BseXI	GCAGC	2 cut(s)	23, 211
BseYI	CCCAGC	1 cut(s)	219
BshFI	GGCC	2 cut(s)	23, 59
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	20
BsnI	GGCC	2 cut(s)	23, 59
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	91, 205
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	23, 59
BspCNI	CTCAG	2 cut(s)	28, 286
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	2 cut(s)	200, 213
BspT104I	TTCGAA	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	2 cut(s)	91, 205
Bst2UI	CCWGG	2 cut(s)	155, 258
BstBAI	YACGTR	1 cut(s)	328
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	21, 61
BstDEI	CTNAG	4 cut(s)	15, 53, 228, 294
BstF5I	GGATG	2 cut(s)	116, 145
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	2 cut(s)	94, 208
BstMBI	GATC	2 cut(s)	91, 205
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 69, 120
BstNI	CCWGG	2 cut(s)	155, 258
BstSCI	CCNGG	2 cut(s)	153, 256
BstV1I	GCAGC	2 cut(s)	23, 211
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	23, 59
BtsCI	GGATG	2 cut(s)	116, 145
Cac8I	GCNNGC	2 cut(s)	21, 61
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	22, 57
CsiI	ACCWGGT	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	1 cut(s)	202
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	4 cut(s)	15, 53, 228, 294
DpnI	GATC	2 cut(s)	93, 207
DpnII	GATC	2 cut(s)	91, 205
Eco72I	CACGTG	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	153, 256
FaeI	CATG	1 cut(s)	205
FaiI	YATR	5 cut(s)	203, 311, 313, 336, 355
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	12, 73, 225
FokI	GGATG	2 cut(s)	123, 152
Fsp4HI	GCNGC	3 cut(s)	12, 73, 225
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	3 cut(s)	12, 73, 225
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	23, 59
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	33, 101, 283, 295
Hpy188III	TCNNGA	3 cut(s)	82, 133, 209
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	136, 158
HpyCH4IV	ACGT	2 cut(s)	327, 349
HpyCH4V	TGCA	3 cut(s)	275, 304, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 69, 120
HpyF3I	CTNAG	4 cut(s)	15, 53, 228, 294
HpySE526I	ACGT	2 cut(s)	327, 349
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	1 cut(s)	9
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	91, 205
LpnPI	CCDG	9 cut(s)	33, 38, 73, 140, 167, 205, 222, 243, 270
Lsp1109I	GCAGC	2 cut(s)	23, 211
LweI	GCATC	2 cut(s)	101, 198
MabI	ACCWGGT	1 cut(s)	153
MaeII	ACGT	2 cut(s)	327, 349
MalI	GATC	2 cut(s)	93, 207
MboI	GATC	2 cut(s)	91, 205
MboII	GAAGA	4 cut(s)	16, 121, 155, 329
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	2 cut(s)	178, 240
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	5 cut(s)	74, 86, 240, 277, 289
MroNI	GCCGGC	1 cut(s)	19
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	155, 258
MvaI	CCWGG	2 cut(s)	155, 258
MwoI	GCNNNNNNNGC	3 cut(s)	20, 69, 120
NaeI	GCCGGC	1 cut(s)	21
NdeII	GATC	2 cut(s)	91, 205
NgoMIV	GCCGGC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	207
NspV	TTCGAA	1 cut(s)	238
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	13, 74, 226
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	153, 256
PspCI	CACGTG	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	2 cut(s)	153, 256
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	22, 57
PsuI	RGATCY	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SatI	GCNGC	3 cut(s)	12, 73, 225
Sau3AI	GATC	2 cut(s)	91, 205
Sau96I	GGNCC	2 cut(s)	22, 57
ScrFI	CCNGG	2 cut(s)	155, 258
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	9 cut(s)	16, 41, 54, 89, 156, 221, 251, 330, 352
SexAI	ACCWGGT	1 cut(s)	153
SfaNI	GCATC	2 cut(s)	101, 198
SfuI	TTCGAA	1 cut(s)	238
Sse9I	AATT	2 cut(s)	178, 240
SsiI	CCGC	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	153, 256
TaiI	ACGT	2 cut(s)	330, 352
TaqI	TCGA	2 cut(s)	238, 245
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	178, 240
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	11, 224
TspDTI	ATGAA	2 cut(s)	17, 156
TspGWI	ACGGA	2 cut(s)	56, 123
Tth111I	GACNNNGTC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.