Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028671.1

Orthogroup ID

OG0007659

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1598

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028671.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 415 bp

aatcacgaatgctgtaaagacatcaggtgtgctgagggagagactatttaatgctgcttacaatgccaagaagaaggcattattaagtggaaaaaatccatctcccatgtgggacaggttggtgtttaataagataaaggctaagctaggaggacgtgttcgttttatggcatcaggtgcttcacccttgtctcctgatgttatggactttttaaaaatatgctttgggggtgacgtaaatgaagggtatggaatgaccgagacttcctgtgttattagtactatggacagcggtgacaacatatctggccatgttggctctcctagtccagcttgcggaaaatcagcctttagttacctggaaaaatgtgattgtggaatcttcctttataggtgccattccgattgtatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

137

Amino Acids

14.74

Weight (kDa)

8.87

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05970
fragaria_vesca	FvH4_4g15110 FvH4_6g05940
malus_domestica	MD13G1188800.v1.1 MD16G1189300.v1.1
prunus_persica	Prupe.1G155800_v2.0.a1
pyrus_communis	pycom13g16310 pycom16g15930
rosa_chinensis	RchiOBHm_Chr4g0416751
rosa_laevigata	RLG00000007955
rosa_multiflora	Rmu_sc0028652.1_g000009 Rmu_sc0028670.1_g000001 Rmu_sc0028671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360620
rosa_rugosa	Rorug04G0144200 Rorug04G0144300 Rorug04G0144400 Rorug04G0144400 Rorug04G0144500
rosa_samantha	Rh4AG207100 Rh4BG204300 Rh4CG218100 Rh4DG204200
rosa_wichuraiana	Rw4G017520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	394
AciI	CCGC	2 cut(s)	292, 337
AcoI	YGGCCR	1 cut(s)	308
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	336
AflIII	ACRYGT	1 cut(s)	155
AjiI	CACGTC	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	358
AloI	GAACNNNNNNTCC	2 cut(s)	142, 174
AluBI	AGCT	2 cut(s)	146, 333
AluI	AGCT	2 cut(s)	146, 333
Alw26I	GTCTC	3 cut(s)	35, 196, 255
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	54
AsuHPI	GGTGA	3 cut(s)	175, 243, 306
BalI	TGGCCA	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	360
BcoDI	GTCTC	3 cut(s)	35, 196, 255
BfaI	CTAG	2 cut(s)	147, 325
BglI	GCCNNNNNGGC	1 cut(s)	316
BisI	GCNGC	1 cut(s)	55
BlpI	GCTNAGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	56
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	360
BmgBI	CACGTC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	33
Bpu1102I	GCTNAGC	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	3 cut(s)	35, 196, 255
BsmFI	GGGAC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	310
Bsp1720I	GCTNAGC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	292, 337
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	33, 142
BstMAI	GTCTC	3 cut(s)	35, 196, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 177, 316
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	2 cut(s)	107, 312
CviJI	RGCY	6 cut(s)	141, 146, 310, 319, 333, 348
CviKI_1	RGCY	6 cut(s)	141, 146, 310, 319, 333, 348
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	33, 142
DraI	TTTAAA	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	358
FaeI	CATG	2 cut(s)	110, 315
FaiI	YATR	9 cut(s)	108, 168, 204, 221, 250, 285, 303, 313, 391
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	2 cut(s)	106, 311
Fnu4HI	GCNGC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	2 cut(s)	147, 325
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	110, 315
HinfI	GANTC	1 cut(s)	379
HphI	GGTGA	3 cut(s)	175, 243, 306
Hpy188I	TCNGA	2 cut(s)	404, 414
Hpy188III	TCNNGA	2 cut(s)	5, 195
HpyAV	CCTTC	2 cut(s)	68, 237
HpyCH4IV	ACGT	2 cut(s)	155, 235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 177, 316
HpyF3I	CTNAG	2 cut(s)	33, 142
HpySE526I	ACGT	2 cut(s)	155, 235
Hsp92II	CATG	2 cut(s)	110, 315
LpnPI	CCDG	9 cut(s)	10, 101, 160, 208, 281, 292, 343, 345, 372
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	147, 325
MaeII	ACGT	2 cut(s)	155, 235
MaeIII	GTNAC	3 cut(s)	231, 294, 354
MboII	GAAGA	2 cut(s)	83, 374
MlsI	TGGCCA	1 cut(s)	310
MluNI	TGGCCA	1 cut(s)	310
MnlI	CCTC	2 cut(s)	28, 144
Mox20I	TGGCCA	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	310
MseI	TTAA	4 cut(s)	49, 84, 127, 213
Msp20I	TGGCCA	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	3 cut(s)	63, 177, 316
NlaIII	CATG	2 cut(s)	110, 315
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	2 cut(s)	231, 294
PctI	GAATGC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	396
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	4 cut(s)	49, 84, 127, 213
SatI	GCNGC	1 cut(s)	55
ScaI	AGTACT	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	9 cut(s)	29, 120, 148, 158, 179, 238, 335, 361, 396
SfaNI	GCATC	1 cut(s)	180
SsiI	CCGC	2 cut(s)	292, 337
SspMI	CTAG	2 cut(s)	147, 325
StyD4I	CCNGG	1 cut(s)	358
TaiI	ACGT	2 cut(s)	158, 238
TaqII	GACCGA	1 cut(s)	273
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	4 cut(s)	49, 84, 127, 213
Tru9I	TTAA	4 cut(s)	49, 84, 127, 213
TseFI	GTSAC	2 cut(s)	231, 294
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	2 cut(s)	231, 294
TspDTI	ATGAA	1 cut(s)	256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	2 cut(s)	147, 325
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.