Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007659

Physical Location & Seq

Genomic Coordinates Reverse (-)

24045052 .. 24046444

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0144500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGTGGTGATCATCTCGTCGTCATTCCTCTCAGACGAGATGGATTTTTGCTGGATTATTCTTCATAAATGTTATTTTCCTCCGTTACTGATTGACAAAGTGTACAAGGCCAAATACTATCCCAACCATTCTTTTTGGGATGCAGAACTTGGAGATGCCACATCCTTTTCATGGAGGAGCATATTAGAAAGTCGACCTGTCTTGGCTGCTGGTATTCAGTGGAAAGTGGGGATTGGAGAACATGTGGATGTATGGAAGGACAGTTGGATTCCTGAGTGTCCTCGTTACCTCATTCACAAGCCACCTCATACTACCATCAGTAAGGTAGCAGATTTAATTAATGAGGAAACACGAAGCTGGACTCAAGGTGTTGTACAAGCTACCTTTCTACCTGAAGTAGCTACAAAAATTCTCAGTATTCCATTAAGCAGAATTTCAGGGAAAGATCGCTATAGATGGAGGTCAGAGAAGAATGAAAAGTATACTGTCAAGTCTACATATTGGTTGCTCGACAGCAGAAACAGTAAACTGTGGAACGATACCCTCAAAAGTGCACAAGAGATTGTTGTTGCCACTTTCACTTGGTATGAACAATTACCACAAGTGCAGAAGATACAGCCGCAAGACAAAGCAGCCAAACCGGGTAAATATTGGACTCCACCATCAAGTAAACAACTCAAAATCAATGTTGATGGAGCTTTCTTGCCTTCTAAAGATATTGGAGGCATTGGTGGAGTGATAAGAAGAAGTGATGGTTCTTTTGTTGCTGCTTTTTCAAAGTGTGCACAGCATGTTTCATCTCCAAAGCAGGTGGAGCTGCTAGCAATCCGAGAGGGCATTGATTTCTACGACAGAGTAGCCTCCAAGAAGCATGCCTTTAAAGTGATTGCCATGTTGCAATACAAGAGATTGGAGAAGAAGATTTTGACCTCAATGAAAATGCCAATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

317

Amino Acids

36.35

Weight (kDa)

9.39

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	229 - 282	1.8e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05970
fragaria_vesca	FvH4_4g15110 FvH4_6g05940
malus_domestica	MD13G1188800.v1.1 MD16G1189300.v1.1
prunus_persica	Prupe.1G155800_v2.0.a1
pyrus_communis	pycom13g16310 pycom16g15930
rosa_chinensis	RchiOBHm_Chr4g0416751
rosa_laevigata	RLG00000007955
rosa_multiflora	Rmu_sc0028652.1_g000009 Rmu_sc0028670.1_g000001 Rmu_sc0028671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360620
rosa_rugosa	Rorug04G0144200 Rorug04G0144300 Rorug04G0144400 Rorug04G0144400 Rorug04G0144500
rosa_samantha	Rh4AG207100 Rh4BG204300 Rh4CG218100 Rh4DG204200
rosa_wichuraiana	Rw4G017520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	799
Acc36I	ACCTGC	1 cut(s)	799
AccI	GTMKAC	3 cut(s)	193, 482, 494
AciI	CCGC	1 cut(s)	620
AcsI	RAATTY	2 cut(s)	408, 432
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	2 cut(s)	104, 375
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	777
AluBI	AGCT	5 cut(s)	357, 380, 401, 698, 817
AluI	AGCT	5 cut(s)	357, 380, 401, 698, 817
Alw21I	GWGCWC	2 cut(s)	556, 787
Alw44I	GTGCAC	2 cut(s)	552, 783
AoxI	GGCC	1 cut(s)	108
ApaLI	GTGCAC	2 cut(s)	552, 783
ApeKI	GCWGC	4 cut(s)	206, 632, 767, 817
ApoI	RAATTY	2 cut(s)	408, 432
AseI	ATTAAT	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	19
AsuNHI	GCTAGC	1 cut(s)	820
BaeGI	GKGCMC	2 cut(s)	556, 787
Bbv12I	GWGCWC	2 cut(s)	556, 787
BbvI	GCAGC	4 cut(s)	193, 644, 754, 804
BccI	CCATC	6 cut(s)	34, 323, 450, 670, 686, 746
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	642
BfaI	CTAG	1 cut(s)	821
BfmI	CTRYAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	799
BisI	GCNGC	5 cut(s)	207, 620, 633, 768, 818
BlsI	GCNGC	5 cut(s)	208, 621, 634, 769, 819
Bme1390I	CCNGG	1 cut(s)	642
BmrFI	CCNGG	1 cut(s)	642
BmsI	GCATC	2 cut(s)	130, 145
BmtI	GCTAGC	1 cut(s)	824
BpuEI	CTTGAG	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	642
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
BseGI	GGATG	3 cut(s)	145, 161, 253
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	3 cut(s)	45, 264, 427
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	2 cut(s)	556, 787
BseXI	GCAGC	4 cut(s)	193, 644, 754, 804
BsgI	GTGCAG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	556, 787
BsiSI	CCGG	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	171
BsnI	GGCC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	556, 787
Bsp1407I	TGTACA	2 cut(s)	102, 373
Bsp143I	GATC	2 cut(s)	9, 445
BspACI	CCGC	1 cut(s)	620
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	3 cut(s)	44, 265, 426
BspMI	ACCTGC	1 cut(s)	799
BspOI	GCTAGC	1 cut(s)	824
BsrGI	TGTACA	2 cut(s)	102, 373
BssMI	GATC	2 cut(s)	9, 445
BssNAI	GTATAC	1 cut(s)	483
Bst1107I	GTATAC	1 cut(s)	483
Bst4CI	ACNGT	4 cut(s)	263, 487, 524, 531
BstAUI	TGTACA	2 cut(s)	102, 373
BstC8I	GCNNGC	2 cut(s)	822, 873
BstDEI	CTNAG	3 cut(s)	31, 273, 413
BstF5I	GGATG	3 cut(s)	145, 161, 253
BstKTI	GATC	2 cut(s)	12, 448
BstMBI	GATC	2 cut(s)	9, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	814
BstNSI	RCATGY	3 cut(s)	245, 794, 875
BstSCI	CCNGG	1 cut(s)	640
BstSFI	CTRYAG	1 cut(s)	451
BstSLI	GKGCMC	2 cut(s)	556, 787
BstV1I	GCAGC	4 cut(s)	193, 644, 754, 804
BstZ17I	GTATAC	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	3 cut(s)	145, 161, 253
BtsIMutI	CAGTG	1 cut(s)	224
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	822, 873
Csp6I	GTAC	2 cut(s)	103, 374
CspCI	CAANNNNNGTGG	2 cut(s)	792, 827
CviAII	CATG	5 cut(s)	171, 242, 791, 872, 892
CviQI	GTAC	2 cut(s)	103, 374
DdeI	CTNAG	3 cut(s)	31, 273, 413
DpnI	GATC	2 cut(s)	11, 447
DpnII	GATC	2 cut(s)	9, 445
DraI	TTTAAA	1 cut(s)	880
Eco57I	CTGAAG	1 cut(s)	414
FaeI	CATG	5 cut(s)	174, 245, 794, 875, 895
FalI	AAGNNNNNCTT	2 cut(s)	860, 892
FatI	CATG	5 cut(s)	170, 241, 790, 871, 891
FbaI	TGATCA	1 cut(s)	9
FblI	GTMKAC	3 cut(s)	193, 482, 494
Fnu4HI	GCNGC	5 cut(s)	207, 620, 633, 768, 818
FokI	GGATG	3 cut(s)	148, 152, 260
Fsp4HI	GCNGC	5 cut(s)	207, 620, 633, 768, 818
FspBI	CTAG	1 cut(s)	821
GluI	GCNGC	5 cut(s)	207, 620, 633, 768, 818
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	641
Hin1II	CATG	5 cut(s)	174, 245, 794, 875, 895
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HinfI	GANTC	3 cut(s)	268, 361, 655
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	8 cut(s)	103, 194, 483, 495, 527, 554, 671, 785
Hpy188I	TCNGA	3 cut(s)	34, 466, 830
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	8 cut(s)	103, 194, 483, 495, 527, 554, 671, 785
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	250, 717
HpyCH4III	ACNGT	4 cut(s)	263, 487, 524, 531
HpyCH4V	TGCA	5 cut(s)	143, 554, 607, 785, 898
HpyF10VI	GCNNNNNNNGC	1 cut(s)	814
HpyF3I	CTNAG	3 cut(s)	31, 273, 413
Hsp92II	CATG	5 cut(s)	174, 245, 794, 875, 895
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	9, 445
LmnI	GCTCC	3 cut(s)	177, 695, 814
LpnPI	CCDG	9 cut(s)	37, 195, 210, 285, 343, 405, 423, 654, 794
Lsp1109I	GCAGC	4 cut(s)	193, 644, 754, 804
LweI	GCATC	2 cut(s)	130, 145
MaeI	CTAG	1 cut(s)	821
MaeIII	GTNAC	2 cut(s)	84, 284
MalI	GATC	2 cut(s)	11, 447
MboI	GATC	2 cut(s)	9, 445
MboII	GAAGA	6 cut(s)	53, 481, 622, 756, 928, 931
MhlI	GDGCHC	2 cut(s)	556, 787
MluCI	AATT	5 cut(s)	336, 408, 432, 593, 945
MlyI	GAGTC	2 cut(s)	355, 649
MmeI	TCCRAC	1 cut(s)	245
MseI	TTAA	4 cut(s)	335, 339, 425, 879
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	641
MspR9I	CCNGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	1 cut(s)	814
NciI	CCSGG	1 cut(s)	642
NdeII	GATC	2 cut(s)	9, 445
NheI	GCTAGC	1 cut(s)	820
NlaIII	CATG	5 cut(s)	174, 245, 794, 875, 895
NspI	RCATGY	3 cut(s)	245, 794, 875
PacI	TTAATTAA	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	875
PaqCI	CACCTGC	1 cut(s)	799
PciI	ACATGT	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	208, 621, 634, 769, 819
PleI	GAGTC	2 cut(s)	355, 649
PpsI	GAGTC	2 cut(s)	355, 649
PscI	ACATGT	1 cut(s)	241
PshBI	ATTAAT	1 cut(s)	339
RsaI	GTAC	2 cut(s)	104, 375
RsaNI	GTAC	2 cut(s)	103, 374
RseI	CAYNNNNRTG	1 cut(s)	246
SalI	GTCGAC	1 cut(s)	192
SaqAI	TTAA	4 cut(s)	335, 339, 425, 879
SatI	GCNGC	5 cut(s)	207, 620, 633, 768, 818
Sau3AI	GATC	2 cut(s)	9, 445
SchI	GAGTC	2 cut(s)	355, 649
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	2 cut(s)	556, 787
SfaNI	GCATC	2 cut(s)	130, 145
SfcI	CTRYAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SphI	GCATGC	1 cut(s)	875
Sse9I	AATT	5 cut(s)	336, 408, 432, 593, 945
SsiI	CCGC	1 cut(s)	620
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	1 cut(s)	821
StyD4I	CCNGG	1 cut(s)	640
TaaI	ACNGT	4 cut(s)	263, 487, 524, 531
TaqI	TCGA	2 cut(s)	193, 510
TasI	AATT	5 cut(s)	336, 408, 432, 593, 945
TatI	WGTACW	2 cut(s)	102, 373
TauI	GCSGC	1 cut(s)	622
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	4 cut(s)	335, 339, 425, 879
Tru9I	TTAA	4 cut(s)	335, 339, 425, 879
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	4 cut(s)	206, 632, 767, 817
TspDTI	ATGAA	6 cut(s)	53, 159, 489, 603, 786, 950
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	224
VneI	GTGCAC	2 cut(s)	552, 783
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	2 cut(s)	408, 432
XceI	RCATGY	3 cut(s)	245, 794, 875
XmiI	GTMKAC	3 cut(s)	193, 482, 494
XspI	CTAG	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.