Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034426.1

Orthogroup ID

OG0003908

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1454

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034426.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

atgcttctgatgtttaagtacatgtctttcaggaatgcttacaatatggtgctgcacaaatttggagagaaactgtactctggtctggtgagaaccatgacttatcatctgatggaaatatccaaatcgattgaagctgctcagggagagctgtttctggaagagcttaacagaaaatgggcagagcataacaaggcgttgcagatgattcgagacatattgatgtacatggacagaacttttattccaagcacccacaaaacccctgttcatgagcttggtctgaacctttggagggatgtcgtcattcactcaagcaaaacccagtctaggcttttggacacgcttcttgagcttgtgcttcgagaaagaaatggtgacgtaatcaacagaggcttgatgcggaatattataaaaatgttaatggatttaggttcttatgtttaccaagaagattttgagaagcattttcttgaagtttcagctgatttttaccgctgtgagtctcaagagttcatcgagtcatgtgattgtggaaactatttaaagaaggccgaaaggcgcctaaatgaggagatggagagagtgtcccattacttagatgctaaaagtgaagctaagattaccaatgtggtggaaaaggagatgattgaaagtcacatgaacaggctagttcatatggaaagctcgggtttagttaatatgcttgtagatgacaaatatgaagacttgggaagaatgtacaacttgtttcgcagagtgcagaatgggcttgtaattgtaagagatgtcatgactgcttacatccgagatactggaaagcatctagttactgacccagaaaggttaagggatcctgtagactttgtgcaacgtctccttgatatgaaggataagtacgacaaaatcatcagtttggcatttaacaatgacaagacattccagaatgctttaaactcttcttttgagtacttcattaatttgaatgcccggtcccctgaatttatttctctctttgtggatgacaagcttcggaaaggtcttagaggggttagcgaggaggatgtagaggttgtactggacaaggtcatgatgcttttccgttaccttcaggagaaagatgtgtttgaaaagtattacaagcaacacttggcaaagaggcttctttcaggcaaaactgtttctgacgatgcagaaagaagtctgattgtaaagctcaaaacagagtgtggatatcaatttacttccaagttggagggtatgttcactgatatgaaaacctctcaagatacaatgcatgggttctacactgcagttggtcctcagttaggtgatagcccaacactaacagtccaggtcctcaccacaggttcatggcccactcagccaagtgtgacatgcaaccttccagctgaaattatgtgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 ko04340 ko04341 map04120 map04340 map04341

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

475

Amino Acids

55.58

Weight (kDa)

6.06

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26830 AT1G69670 AT1G69670
fragaria_vesca	FvH4_4g31500 FvH4_6g48910
malus_domestica	MD09G1049800.v1.1 MD16G1074600.v1.1 MD17G1050100.v1.1
prunus_persica	Prupe.1G272800_v2.0.a1 Prupe.3G269000_v2.0.a1
pyrus_communis	pycom111g04080 pycom16g06460 pycom17g04490 pycom17g04500
rosa_chinensis	RchiOBHm_Chr2g0168721 RchiOBHm_Chr4g0439991
rosa_laevigata	RLG00000006217 RLG00000021804
rosa_multiflora	Rmu_sc0006000.1_g000007 Rmu_sc0034426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082740 Rroxscaffold_5G00380940
rosa_rugosa	Rorug02G0535000 Rorug04G0323000
rosa_samantha	Rh2AG605700 Rh2BG618700 Rh2CG586800 Rh2DG629200 Rh4AG374100 Rh4BG386400 Rh4CG400900 Rh4DG380700
rosa_wichuraiana	Rw2G050210 Rw4G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	561
AccI	GTMKAC	1 cut(s)	861
AciI	CCGC	2 cut(s)	403, 496
AclWI	GGATC	2 cut(s)	848, 861
AcsI	RAATTY	2 cut(s)	59, 1001
AcuI	CTGAAG	1 cut(s)	1094
AcyI	GRCGYC	1 cut(s)	562
AfaI	GTAC	7 cut(s)	20, 77, 227, 743, 899, 971, 1077
AfiI	CCNNNNNNNGG	4 cut(s)	295, 330, 571, 1328
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	5 cut(s)	134, 476, 653, 985, 1130
AjnI	CCWGG	1 cut(s)	1353
AloI	GAACNNNNNNTCC	4 cut(s)	229, 261, 1247, 1279
Alw26I	GTCTC	3 cut(s)	207, 510, 881
AlwI	GGATC	2 cut(s)	848, 861
Ama87I	CYCGRG	1 cut(s)	688
AoxI	GGCC	2 cut(s)	552, 1376
ApeKI	GCWGC	2 cut(s)	52, 137
ApoI	RAATTY	2 cut(s)	59, 1001
AseI	ATTAAT	1 cut(s)	978
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	4 cut(s)	993, 1319, 1357, 1377
AsuC2I	CCSGG	1 cut(s)	991
AsuHPI	GGTGA	4 cut(s)	100, 389, 1343, 1354
AvaI	CYCGRG	1 cut(s)	688
AvaII	GGWCC	3 cut(s)	993, 1319, 1357
BamHI	GGATCC	1 cut(s)	853
BanI	GGYRCC	1 cut(s)	561
BarI	GAAGNNNNNNTAC	2 cut(s)	881, 913
BbsI	GAAGAC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	39, 124
BccI	CCATC	2 cut(s)	106, 571
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	1 cut(s)	1355
BcnI	CCSGG	1 cut(s)	991
BcoDI	GTCTC	3 cut(s)	207, 510, 881
BfaI	CTAG	3 cut(s)	330, 671, 827
BfmI	CTRYAG	2 cut(s)	858, 1311
BfoI	RGCGCY	1 cut(s)	565
BisI	GCNGC	2 cut(s)	53, 138
BlsI	GCNGC	2 cut(s)	54, 139
BmcAI	AGTACT	1 cut(s)	971
Bme1390I	CCNGG	2 cut(s)	991, 1355
Bme18I	GGWCC	3 cut(s)	993, 1319, 1357
BmeT110I	CYCGRG	1 cut(s)	688
BmgT120I	GGNCC	4 cut(s)	993, 1319, 1357, 1377
BmiI	GGNNCC	3 cut(s)	563, 855, 995
BmrFI	CCNGG	2 cut(s)	991, 1355
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	5 cut(s)	390, 592, 832, 1083, 1180
BmuI	ACTGGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	4 cut(s)	298, 371, 492, 1269
BpuMI	CCSGG	1 cut(s)	991
Bsa29I	ATCGAT	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	562
BsaXI	ACNNNNNCTCC	4 cut(s)	572, 602, 1247, 1277
Bsc4I	CCNNNNNNNGG	4 cut(s)	295, 330, 571, 1328
Bse1I	ACTGG	3 cut(s)	325, 820, 1083
BseBI	CCWGG	1 cut(s)	1355
BseCI	ATCGAT	1 cut(s)	128
BseGI	GGATG	4 cut(s)	304, 804, 1027, 1069
BseLI	CCNNNNNNNGG	4 cut(s)	295, 330, 571, 1328
BseMII	CTCAG	3 cut(s)	155, 1337, 1397
BseNI	ACTGG	3 cut(s)	325, 820, 1083
BseRI	GAGGAG	2 cut(s)	587, 1073
BseXI	GCAGC	2 cut(s)	39, 124
BsgI	GTGCAG	2 cut(s)	38, 782
BshFI	GGCC	2 cut(s)	554, 1378
BshNI	GGYRCC	1 cut(s)	561
BshVI	ATCGAT	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	688
BsiSI	CCGG	1 cut(s)	991
BslFI	GGGAC	2 cut(s)	574, 979
BslI	CCNNNNNNNGG	4 cut(s)	295, 330, 571, 1328
BsmAI	GTCTC	3 cut(s)	207, 510, 881
BsmBI	CGTCTC	1 cut(s)	881
BsmFI	GGGAC	2 cut(s)	574, 979
BsmI	GAATGC	3 cut(s)	40, 952, 991
BsnI	GGCC	2 cut(s)	554, 1378
BsoBI	CYCGRG	1 cut(s)	688
Bsp1407I	TGTACA	2 cut(s)	225, 741
Bsp143I	GATC	1 cut(s)	853
BspACI	CCGC	2 cut(s)	403, 496
BspANI	GGCC	2 cut(s)	554, 1378
BspCNI	CTCAG	3 cut(s)	154, 1336, 1396
BspDI	ATCGAT	1 cut(s)	128
BspHI	TCATGA	3 cut(s)	271, 792, 1089
BspLI	GGNNCC	3 cut(s)	563, 855, 995
BspMAI	CTGCAG	1 cut(s)	1315
BspPI	GGATC	2 cut(s)	848, 861
BspQI	GCTCTTC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	561
BsrGI	TGTACA	2 cut(s)	225, 741
BsrI	ACTGG	3 cut(s)	325, 820, 1083
BssMI	GATC	1 cut(s)	853
BssNI	GRCGYC	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	1355
Bst4CI	ACNGT	3 cut(s)	75, 1180, 1351
Bst6I	CTCTTC	2 cut(s)	156, 964
BstACI	GRCGYC	1 cut(s)	562
BstAUI	TGTACA	2 cut(s)	225, 741
BstDEI	CTNAG	6 cut(s)	141, 598, 618, 1043, 1323, 1383
BstENI	CCTNNNNNAGG	2 cut(s)	569, 1326
BstF5I	GGATG	4 cut(s)	304, 804, 1027, 1069
BstH2I	RGCGCY	1 cut(s)	565
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	1 cut(s)	856
BstMAI	GTCTC	3 cut(s)	207, 510, 881
BstMBI	GATC	1 cut(s)	853
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 769, 1384
BstNI	CCWGG	1 cut(s)	1355
BstNSI	RCATGY	2 cut(s)	25, 1401
BstSCI	CCNGG	2 cut(s)	989, 1353
BstSFI	CTRYAG	2 cut(s)	858, 1311
BstV1I	GCAGC	2 cut(s)	39, 124
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	853
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	853
Bsu15I	ATCGAT	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	554, 1378
BsuTUI	ATCGAT	1 cut(s)	128
BtsCI	GGATG	4 cut(s)	304, 804, 1027, 1069
BtsI	GCAGTG	1 cut(s)	1308
BtsIMutI	CAGTG	2 cut(s)	1266, 1308
CciI	TCATGA	3 cut(s)	271, 792, 1089
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	4 cut(s)	993, 1319, 1357, 1377
ClaI	ATCGAT	1 cut(s)	128
Csp6I	GTAC	7 cut(s)	19, 76, 226, 742, 898, 970, 1076
CviQI	GTAC	7 cut(s)	19, 76, 226, 742, 898, 970, 1076
DdeI	CTNAG	6 cut(s)	141, 598, 618, 1043, 1323, 1383
DinI	GGCGCC	1 cut(s)	563
DpnI	GATC	1 cut(s)	855
DpnII	GATC	1 cut(s)	853
DraI	TTTAAA	2 cut(s)	546, 954
Eam1104I	CTCTTC	2 cut(s)	156, 964
EarI	CTCTTC	2 cut(s)	156, 964
Eco32I	GATATC	1 cut(s)	1235
Eco47I	GGWCC	3 cut(s)	993, 1319, 1357
Eco57I	CTGAAG	1 cut(s)	1094
Eco88I	CYCGRG	1 cut(s)	688
EcoNI	CCTNNNNNAGG	2 cut(s)	569, 1326
EcoO109I	RGGNCCY	1 cut(s)	1357
EcoRII	CCWGG	1 cut(s)	1353
EcoRV	GATATC	1 cut(s)	1235
EcoT22I	ATGCAT	1 cut(s)	1299
EgeI	GGCGCC	1 cut(s)	563
EheI	GGCGCC	1 cut(s)	563
Esp3I	CGTCTC	1 cut(s)	881
FalI	AAGNNNNNCTT	2 cut(s)	1133, 1165
FaqI	GGGAC	2 cut(s)	574, 979
FauNDI	CATATG	1 cut(s)	678
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	2 cut(s)	53, 138
FokI	GGATG	4 cut(s)	311, 791, 1034, 1076
Fsp4HI	GCNGC	2 cut(s)	53, 138
FspBI	CTAG	3 cut(s)	330, 671, 827
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	2 cut(s)	53, 138
HaeII	RGCGCY	1 cut(s)	565
HaeIII	GGCC	2 cut(s)	554, 1378
HapII	CCGG	1 cut(s)	991
HhaI	GCGC	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	562
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	1028
HinfI	GANTC	3 cut(s)	208, 503, 521
HpaII	CCGG	1 cut(s)	991
HphI	GGTGA	4 cut(s)	100, 389, 1343, 1354
Hpy166II	GTNNAC	3 cut(s)	445, 862, 1266
Hpy188I	TCNGA	7 cut(s)	9, 111, 285, 809, 1035, 1186, 1206
Hpy8I	GTNNAC	3 cut(s)	445, 862, 1266
HpyAV	CCTTC	4 cut(s)	544, 883, 1118, 1415
HpyCH4III	ACNGT	3 cut(s)	75, 1180, 1351
HpyCH4IV	ACGT	2 cut(s)	381, 874
HpyCH4V	TGCA	8 cut(s)	55, 202, 763, 871, 1193, 1297, 1313, 1401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 769, 1384
HpyF3I	CTNAG	6 cut(s)	141, 598, 618, 1043, 1323, 1383
HpySE526I	ACGT	2 cut(s)	381, 874
Hsp92I	GRCGYC	1 cut(s)	562
HspAI	GCGC	1 cut(s)	562
KasI	GGCGCC	1 cut(s)	561
Kzo9I	GATC	1 cut(s)	853
LguI	GCTCTTC	1 cut(s)	156
Lsp1109I	GCAGC	2 cut(s)	39, 124
LweI	GCATC	5 cut(s)	390, 592, 832, 1083, 1180
MaeI	CTAG	3 cut(s)	330, 671, 827
MaeII	ACGT	2 cut(s)	381, 874
MaeIII	GTNAC	5 cut(s)	377, 656, 829, 1103, 1393
MalI	GATC	1 cut(s)	855
MboI	GATC	1 cut(s)	853
MboII	GAAGA	5 cut(s)	173, 464, 737, 747, 951
MflI	RGATCY	1 cut(s)	853
MluCI	AATT	6 cut(s)	59, 777, 979, 1001, 1238, 1416
Mly113I	GGCGCC	1 cut(s)	562
MlyI	GAGTC	2 cut(s)	512, 530
MmeI	TCCRAC	1 cut(s)	1233
Mph1103I	ATGCAT	1 cut(s)	1299
MseI	TTAA	9 cut(s)	15, 168, 422, 545, 699, 848, 924, 953, 978
MslI	CAYNNNNRTG	2 cut(s)	221, 1271
MspA1I	CMGCKG	3 cut(s)	485, 498, 1412
MspI	CCGG	1 cut(s)	991
MspR9I	CCNGG	2 cut(s)	991, 1355
Mva1269I	GAATGC	3 cut(s)	40, 952, 991
MvaI	CCWGG	1 cut(s)	1355
MwoI	GCNNNNNNNGC	3 cut(s)	352, 769, 1384
NarI	GGCGCC	1 cut(s)	562
NciI	CCSGG	1 cut(s)	991
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	1 cut(s)	853
NlaIV	GGNNCC	3 cut(s)	563, 855, 995
NmuCI	GTSAC	3 cut(s)	377, 656, 1393
NsiI	ATGCAT	1 cut(s)	1299
NspI	RCATGY	2 cut(s)	25, 1401
PagI	TCATGA	3 cut(s)	271, 792, 1089
PciI	ACATGT	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	156
PctI	GAATGC	3 cut(s)	40, 952, 991
PfeI	GAWTC	1 cut(s)	208
PflFI	GACNNNGTC	1 cut(s)	1085
PkrI	GCNGC	2 cut(s)	54, 139
PleI	GAGTC	2 cut(s)	511, 529
PluTI	GGCGCC	1 cut(s)	565
PpsI	GAGTC	2 cut(s)	511, 529
PpuMI	RGGWCCY	1 cut(s)	1357
PscI	ACATGT	1 cut(s)	21
PshBI	ATTAAT	1 cut(s)	978
PsiI	TTATAA	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	1357
Psp6I	CCWGG	1 cut(s)	1353
PspGI	CCWGG	1 cut(s)	1353
PspN4I	GGNNCC	3 cut(s)	563, 855, 995
PspPI	GGNCC	4 cut(s)	993, 1319, 1357, 1377
PspPPI	RGGWCCY	1 cut(s)	1357
PstI	CTGCAG	1 cut(s)	1315
PsuI	RGATCY	1 cut(s)	853
PsyI	GACNNNGTC	1 cut(s)	1085
PvuII	CAGCTG	2 cut(s)	485, 1412
RsaI	GTAC	7 cut(s)	20, 77, 227, 743, 899, 971, 1077
RsaNI	GTAC	7 cut(s)	19, 76, 226, 742, 898, 970, 1076
RseI	CAYNNNNRTG	2 cut(s)	221, 1271
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	9 cut(s)	15, 168, 422, 545, 699, 848, 924, 953, 978
SatI	GCNGC	2 cut(s)	53, 138
Sau3AI	GATC	1 cut(s)	853
Sau96I	GGNCC	4 cut(s)	993, 1319, 1357, 1377
ScaI	AGTACT	1 cut(s)	971
SchI	GAGTC	2 cut(s)	512, 530
ScrFI	CCNGG	2 cut(s)	991, 1355
SfaNI	GCATC	5 cut(s)	390, 592, 832, 1083, 1180
SfcI	CTRYAG	2 cut(s)	858, 1311
SfoI	GGCGCC	1 cut(s)	563
SinI	GGWCC	3 cut(s)	993, 1319, 1357
SmiMI	CAYNNNNRTG	2 cut(s)	221, 1271
SmlI	CTYRAG	4 cut(s)	313, 350, 507, 1284
SmoI	CTYRAG	4 cut(s)	313, 350, 507, 1284
Sse9I	AATT	6 cut(s)	59, 777, 979, 1001, 1238, 1416
SsiI	CCGC	2 cut(s)	403, 496
SspDI	GGCGCC	1 cut(s)	561
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	3 cut(s)	330, 671, 827
StyD4I	CCNGG	2 cut(s)	989, 1353
TaaI	ACNGT	3 cut(s)	75, 1180, 1351
TaiI	ACGT	2 cut(s)	384, 877
TaqI	TCGA	4 cut(s)	128, 211, 364, 519
TasI	AATT	6 cut(s)	59, 777, 979, 1001, 1238, 1416
TatI	WGTACW	6 cut(s)	18, 75, 225, 741, 969, 1075
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	9 cut(s)	15, 168, 422, 545, 699, 848, 924, 953, 978
Tru9I	TTAA	9 cut(s)	15, 168, 422, 545, 699, 848, 924, 953, 978
TscAI	CASTG	2 cut(s)	1273, 1315
TseFI	GTSAC	3 cut(s)	377, 656, 1393
TseI	GCWGC	2 cut(s)	52, 137
Tsp45I	GTSAC	3 cut(s)	377, 656, 1393
TspDTI	ATGAA	9 cut(s)	260, 505, 665, 677, 738, 902, 964, 1289, 1362
TspGWI	ACGGA	1 cut(s)	1091
TspRI	CASTG	2 cut(s)	1273, 1315
Tth111I	GACNNNGTC	1 cut(s)	1085
VpaK11BI	GGWCC	3 cut(s)	993, 1319, 1357
VspI	ATTAAT	1 cut(s)	978
XagI	CCTNNNNNAGG	2 cut(s)	569, 1326
XapI	RAATTY	2 cut(s)	59, 1001
XceI	RCATGY	2 cut(s)	25, 1401
XmiI	GTMKAC	1 cut(s)	861
XspI	CTAG	3 cut(s)	330, 671, 827
ZrmI	AGTACT	1 cut(s)	971
Zsp2I	ATGCAT	1 cut(s)	1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.