Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003908

Physical Location & Seq

Genomic Coordinates Reverse (-)

59838209 .. 59841259

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG380700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGAGTAACCAGAAGAAGAGGAATTTTCAGATAGAGGCGTTCAAGCACAGAGTGGTGGTGGATCCGAAATACGCCGACAAGACGTGGAAGGTTTTGGAGCATGCAATCCGTGAGATTTACAATCACAATGCTAGTGGCCTCAGCTTTGAAGAGCTTTACAGAAATGCGTACAATATGGTGCTTCACAAATATGGTGAGAAGCTGTACTCGGGGCTGGTTAAAACTATGACTTCTCATCTCAAAGAAATATCCAAGTGTATTGAAGCTGCTCAAGGAGGGATGTTTCTGGAAGAGATGAATAAGTTGTGGACGGATCATAACAAGGCGTTGCAAATGATTCGAGACATACTGATGTACATGGACAGGACTTACATTCCGAGTACCCAGAAAACCCCTGTTCACGAGCTTGGGCTGAATCTTTGGAGAGATAACATTATTCACTCGAGCAAGATCCAGACGAGGCTTCTAAACACACTTCTTGAACTAGTACTCAGAGAACGGACCGGTGATGTTATCAACCGGGGTTTGATGAGGAATATAATTAAGATGCTAATGGACTTGGGTCCTTCAGTTTACCAGGAAGACTTTGAGAATCCCTTTCTTGAGGTTTCAGCCGAATTTTACAAGGGTGAATCTCAGAAATTTATTGAGTGCTGTGATTGTGGGGATTATCTGAAGAAGGCTGAGAGGCGCCTAAATGAGGAACTGGAGAGGGTGACACATTACTTGGATGCAAAGAGTGAGGTCAAGATTACTAATGTGGTGGAGAAGGAGATGATTGCTAACCACATGCTGCGACTAGTCCACATGGAGAATTCAGGCTTGGTGAACATGCTTCTTGATGATAAGTATGAAGATCTTGGAAGAATGTACAACTTGTTTCGTCGGGTTGCCAATGGTCTCTCAACAATACGAGAAGTGATGACTTCTCACATCAGGGAAACTGGTAAACAGCTGGTTACTGATCCAGAAAGGTTGAAGGATCCAGTGGAATTTGTGCAGAGGCTCTTGGATGAGAAAGATAAGTATGATAGCATCATTAAATTGTCGTTCAACAATGACAAGACATTTCAGAATGGTTTGAATTCCTCTTTTGAGTATTTTATTAATCTAAATACTCGTTCACCTGAGTTCATTTCACTGTTTGTTGATGACAAACTCCGCAAAGGGTTGAAGGGGGTCAGTGAGGAGGATGTAGAAGTTATTCTCGACAAGGTGATGATGTTGTTCCGTTACTTGCAGGAGAAAGATGTGTTTGAGAAATATTATAAACAGCATTTGGCAAAGAGGCTTTTGTCCGGTAAAACTGTCTCTGATGATGCAGAGAGAAGTTTAATAGTCAAGCTCAAGACAGAGTGTGGGTACCAATTTACTTCAAAATTAGAGGGTATGTTTACAGATATGAAAACTTCCCAGGATACGATGCAAGGATTTTATGCTAGCCATCCTGAGCTAGGGGATGGCCCTACATTGACCGTCCAGGTTCTAACAACGGGGTCCTGGCCCACTCAACCGAGCGTGACATGCAACCTTCCAGCAGAAATGTCAGCGCTCTGTGAGAAATTCCGCTCATATTACCTAGGAACCCATACAGGTCGGAGGTTGTCTTGGCAGACAAACATGGGTACAGCAGATATAAAGGCTACCTTTGGGAAGGGCCAGAAGCATGAGTTGAATGTTTCCACTTACCAAATGTGTGTCCTAATGCTATTTAACAATGCTGATAGACTTAACTATAAGGAGATTGAGCAGGCCACCGAGATTCCAGCTTTAGATTTGAAGAGGTGTCTGCAATCCATGGCTTGTGTGAAGGGAAAGAATGTTCTTCGGAAAGAGCCTATGAGTAAAGACATTTGTGAGGACGACACTTTTCTCGTTAACGAGAAGTTCACAAGCAAGCTGTATAAGGTGAAGATAGGAACTGTGGTTGCACAGAAAGAATCGGAACCAGAGAAACAAGAGACTCGTCAAAGAGTGGAGGAGGACAGGAAGCCCCAGATTGAAGCTGCGATAGTGAGGATCATGAAGTCGAGGAGGACTCTGGATCATAACAATGTAATATCTGAGGTTACAAAGCAGCTGCAATCACGATTCCTGGCCAACCCAACAGAGATTAAGAAACGCATTGAGTCCCTTATTGAGCGAGAGTTCTTGGAAAGGGACGGTACAGACAGAAAATTGTATCGGTATCTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009909 GO:0009911 GO:0019899 GO:0031461 GO:0031625 GO:0032991 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04120 ko04340 ko04341 map04120 map04340 map04341

Pfam Domains

Protein Families

Cullin Cullin_Nedd8

Protein Analysis

732

Amino Acids

85.29

Weight (kDa)

8.23

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	29 - 475	1.8e-164	Cullin alpha solenoid domain
Cullin_AB	PF26557	495 - 630	5.6e-51	Cullin alpha+beta domain
Cullin_Nedd8	PF10557	662 - 723	1.2e-26	Cullin protein neddylation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26830 AT1G69670 AT1G69670
fragaria_vesca	FvH4_4g31500 FvH4_6g48910
malus_domestica	MD09G1049800.v1.1 MD16G1074600.v1.1 MD17G1050100.v1.1
prunus_persica	Prupe.1G272800_v2.0.a1 Prupe.3G269000_v2.0.a1
pyrus_communis	pycom111g04080 pycom16g06460 pycom17g04490 pycom17g04500
rosa_chinensis	RchiOBHm_Chr2g0168721 RchiOBHm_Chr4g0439991
rosa_laevigata	RLG00000006217 RLG00000021804
rosa_multiflora	Rmu_sc0006000.1_g000007 Rmu_sc0034426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082740 Rroxscaffold_5G00380940
rosa_rugosa	Rorug02G0535000 Rorug04G0323000
rosa_samantha	Rh2AG605700 Rh2BG618700 Rh2CG586800 Rh2DG629200 Rh4AG374100 Rh4BG386400 Rh4CG400900 Rh4DG380700
rosa_wichuraiana	Rw2G050210 Rw4G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1269
Acc65I	GGTACC	1 cut(s)	1362
AccB1I	GGYRCC	2 cut(s)	690, 1362
AccBSI	CCGCTC	1 cut(s)	1569
AciI	CCGC	2 cut(s)	1162, 1567
AclWI	GGATC	9 cut(s)	56, 69, 321, 445, 959, 977, 990, 2027, 2052
AcoI	YGGCCR	1 cut(s)	2097
AcsI	RAATTY	7 cut(s)	22, 617, 641, 814, 992, 1084, 1562
AcuI	CTGAAG	2 cut(s)	552, 695
AcyI	GRCGYC	1 cut(s)	691
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	9 cut(s)	170, 206, 356, 382, 489, 872, 1364, 1627, 2167
AfeI	AGCGCT	1 cut(s)	1551
AfiI	CCNNNNNNNGG	2 cut(s)	700, 1454
AgeI	ACCGGT	1 cut(s)	503
AhlI	ACTAGT	2 cut(s)	484, 799
AjiI	CACGTC	1 cut(s)	84
AjnI	CCWGG	5 cut(s)	576, 1413, 1479, 1499, 2094
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
AloI	GAACNNNNNNTCC	2 cut(s)	1806, 1838
Alw26I	GTCTC	4 cut(s)	336, 905, 1315, 1955
AlwI	GGATC	9 cut(s)	56, 69, 321, 445, 959, 977, 990, 2027, 2052
Ama87I	CYCGRG	2 cut(s)	208, 442
Aor51HI	AGCGCT	1 cut(s)	1551
AoxI	GGCC	6 cut(s)	136, 1462, 1502, 1657, 1752, 2097
ApeKI	GCWGC	5 cut(s)	266, 793, 2006, 2077, 2080
ApoI	RAATTY	7 cut(s)	22, 617, 641, 814, 992, 1084, 1562
AseI	ATTAAT	1 cut(s)	1107
AsiGI	ACCGGT	1 cut(s)	503
Asp700I	GAANNNNTTC	1 cut(s)	1203
Asp718I	GGTACC	1 cut(s)	1362
AspA2I	CCTAGG	1 cut(s)	1579
AspLEI	GCGC	2 cut(s)	693, 1552
AspS9I	GGNCC	6 cut(s)	501, 563, 1463, 1497, 1503, 1657
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	8 cut(s)	206, 518, 641, 727, 838, 1116, 1228, 1921
AsuNHI	GCTAGC	1 cut(s)	1439
AvaI	CYCGRG	2 cut(s)	208, 442
AvaII	GGWCC	3 cut(s)	501, 563, 1497
AvrII	CCTAGG	1 cut(s)	1579
BalI	TGGCCA	1 cut(s)	2099
BamHI	GGATCC	2 cut(s)	61, 982
BanI	GGYRCC	2 cut(s)	690, 1362
BauI	CACGAG	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	588
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	5 cut(s)	253, 780, 1993, 2067, 2089
BccI	CCATC	2 cut(s)	1452, 1454
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	5 cut(s)	578, 1415, 1481, 1501, 2096
BciVI	GTATCC	1 cut(s)	1411
BcnI	CCSGG	1 cut(s)	521
BcoDI	GTCTC	4 cut(s)	336, 905, 1315, 1955
BcuI	ACTAGT	2 cut(s)	484, 799
BfaI	CTAG	7 cut(s)	132, 485, 800, 1440, 1454, 1580, 2197
BfoI	RGCGCY	2 cut(s)	694, 1553
BfuI	GTATCC	1 cut(s)	1411
BglII	AGATCT	1 cut(s)	856
BisI	GCNGC	5 cut(s)	267, 794, 2007, 2078, 2081
BlnI	CCTAGG	1 cut(s)	1579
BlsI	GCNGC	5 cut(s)	268, 795, 2008, 2079, 2082
BmcAI	AGTACT	1 cut(s)	489
Bme1390I	CCNGG	6 cut(s)	521, 578, 1415, 1481, 1501, 2096
Bme18I	GGWCC	3 cut(s)	501, 563, 1497
BmeT110I	CYCGRG	2 cut(s)	208, 442
BmgBI	CACGTC	1 cut(s)	84
BmgT120I	GGNCC	6 cut(s)	501, 563, 1463, 1497, 1503, 1657
BmiI	GGNNCC	8 cut(s)	63, 564, 692, 984, 1364, 1498, 1585, 1947
BmrFI	CCNGG	6 cut(s)	521, 578, 1415, 1481, 1501, 2096
BmsI	GCATC	5 cut(s)	537, 721, 1044, 1309, 1413
BmtI	GCTAGC	1 cut(s)	1443
BoxI	GACNNNNGTC	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	588
BplI	GAGNNNNNCTC	2 cut(s)	2023, 2055
BpmI	CTGGAG	1 cut(s)	728
Bpu10I	CCTNAGC	2 cut(s)	140, 1449
BpuEI	CTTGAG	3 cut(s)	255, 623, 1331
BpuMI	CCSGG	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	691
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	4 cut(s)	520, 1413, 1579, 1797
BsaWI	WCCGGW	2 cut(s)	503, 1298
Bsc4I	CCNNNNNNNGG	2 cut(s)	700, 1454
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	3 cut(s)	711, 949, 986
BseBI	CCWGG	5 cut(s)	578, 1415, 1481, 1501, 2096
BseDI	CCNNGG	4 cut(s)	520, 1413, 1579, 1797
BseGI	GGATG	6 cut(s)	285, 736, 1018, 1198, 1444, 1465
BseLI	CCNNNNNNNGG	2 cut(s)	700, 1454
BseMII	CTCAG	7 cut(s)	154, 505, 650, 675, 1119, 1440, 2055
BseNI	ACTGG	3 cut(s)	711, 949, 986
BseRI	GAGGAG	3 cut(s)	1202, 1994, 2047
BseXI	GCAGC	5 cut(s)	253, 780, 1993, 2067, 2089
BsgI	GTGCAG	1 cut(s)	1019
BshFI	GGCC	6 cut(s)	138, 1464, 1504, 1659, 1754, 2099
BshNI	GGYRCC	2 cut(s)	690, 1362
BshTI	ACCGGT	1 cut(s)	503
BsiHKCI	CYCGRG	2 cut(s)	208, 442
BsiSI	CCGG	3 cut(s)	504, 520, 1299
BslFI	GGGAC	2 cut(s)	2116, 2174
BslI	CCNNNNNNNGG	2 cut(s)	700, 1454
BsmAI	GTCTC	4 cut(s)	336, 905, 1315, 1955
BsmFI	GGGAC	2 cut(s)	2116, 2174
BsnI	GGCC	6 cut(s)	138, 1464, 1504, 1659, 1754, 2099
Bso31I	GGTCTC	1 cut(s)	905
BsoBI	CYCGRG	2 cut(s)	208, 442
Bsp1407I	TGTACA	2 cut(s)	354, 870
Bsp143I	GATC	8 cut(s)	61, 313, 450, 856, 964, 982, 2019, 2044
Bsp19I	CCATGG	1 cut(s)	1797
BspACI	CCGC	2 cut(s)	1162, 1567
BspANI	GGCC	6 cut(s)	138, 1464, 1504, 1659, 1754, 2099
BspCNI	CTCAG	7 cut(s)	153, 504, 649, 676, 1120, 1441, 2056
BspHI	TCATGA	1 cut(s)	2022
BspLI	GGNNCC	8 cut(s)	63, 564, 692, 984, 1364, 1498, 1585, 1947
BspOI	GCTAGC	1 cut(s)	1443
BspPI	GGATC	9 cut(s)	56, 69, 321, 445, 959, 977, 990, 2027, 2052
BspQI	GCTCTTC	1 cut(s)	144
BspT107I	GGYRCC	2 cut(s)	690, 1362
BspTNI	GGTCTC	1 cut(s)	905
BsrBI	CCGCTC	1 cut(s)	1569
BsrFI	RCCGGY	1 cut(s)	503
BsrGI	TGTACA	2 cut(s)	354, 870
BsrI	ACTGG	3 cut(s)	711, 949, 986
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	4 cut(s)	520, 1413, 1579, 1797
BssMI	GATC	8 cut(s)	61, 313, 450, 856, 964, 982, 2019, 2044
BssNI	GRCGYC	1 cut(s)	691
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	2 cut(s)	1579, 1797
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	5 cut(s)	578, 1415, 1481, 1501, 2096
Bst4CI	ACNGT	5 cut(s)	1143, 1309, 1477, 1924, 2165
Bst6I	CTCTTC	4 cut(s)	11, 144, 285, 1775
BstACI	GRCGYC	1 cut(s)	691
BstAUI	TGTACA	2 cut(s)	354, 870
BstC8I	GCNNGC	4 cut(s)	102, 1441, 1752, 1898
BstDEI	CTNAG	7 cut(s)	140, 491, 636, 684, 1128, 1449, 2064
BstDSI	CCRYGG	1 cut(s)	1797
BstENI	CCTNNNNNAGG	2 cut(s)	698, 1452
BstF5I	GGATG	6 cut(s)	285, 736, 1018, 1198, 1444, 1465
BstH2I	RGCGCY	2 cut(s)	694, 1553
BstHHI	GCGC	2 cut(s)	693, 1552
BstKTI	GATC	8 cut(s)	64, 316, 453, 859, 967, 985, 2022, 2047
BstMAI	GTCTC	4 cut(s)	336, 905, 1315, 1955
BstMBI	GATC	8 cut(s)	61, 313, 450, 856, 964, 982, 2019, 2044
BstMWI	GCNNNNNNNGC	1 cut(s)	1524
BstNI	CCWGG	5 cut(s)	578, 1415, 1481, 1501, 2096
BstNSI	RCATGY	4 cut(s)	104, 793, 835, 1527
BstPAI	GACNNNNGTC	1 cut(s)	561
BstSCI	CCNGG	6 cut(s)	519, 576, 1413, 1479, 1499, 2094
BstV1I	GCAGC	5 cut(s)	253, 780, 1993, 2067, 2089
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	4 cut(s)	61, 450, 856, 982
BstYI	RGATCY	4 cut(s)	61, 450, 856, 982
BsuI	GTATCC	1 cut(s)	1411
BsuRI	GGCC	6 cut(s)	138, 1464, 1504, 1659, 1754, 2099
BtgI	CCRYGG	1 cut(s)	1797
BtrI	CACGTC	1 cut(s)	84
BtsCI	GGATG	6 cut(s)	285, 736, 1018, 1198, 1444, 1465
BtsIMutI	CAGTG	3 cut(s)	993, 1139, 1189
Cac8I	GCNNGC	4 cut(s)	102, 1441, 1752, 1898
CciI	TCATGA	1 cut(s)	2022
CfoI	GCGC	2 cut(s)	693, 1552
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	6 cut(s)	501, 563, 1463, 1497, 1503, 1657
CpoI	CGGWCCG	1 cut(s)	501
Csp6I	GTAC	9 cut(s)	169, 205, 355, 381, 488, 871, 1363, 1626, 2166
CspAI	ACCGGT	1 cut(s)	503
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CspI	CGGWCCG	1 cut(s)	501
CviQI	GTAC	9 cut(s)	169, 205, 355, 381, 488, 871, 1363, 1626, 2166
DdeI	CTNAG	7 cut(s)	140, 491, 636, 684, 1128, 1449, 2064
DinI	GGCGCC	1 cut(s)	692
DpnI	GATC	8 cut(s)	63, 315, 452, 858, 966, 984, 2021, 2046
DpnII	GATC	8 cut(s)	61, 313, 450, 856, 964, 982, 2019, 2044
DraIII	CACNNNGTG	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	2097
Eam1104I	CTCTTC	4 cut(s)	11, 144, 285, 1775
EarI	CTCTTC	4 cut(s)	11, 144, 285, 1775
Eco130I	CCWWGG	2 cut(s)	1579, 1797
Eco31I	GGTCTC	1 cut(s)	905
Eco47I	GGWCC	3 cut(s)	501, 563, 1497
Eco47III	AGCGCT	1 cut(s)	1551
Eco57I	CTGAAG	2 cut(s)	552, 695
Eco88I	CYCGRG	2 cut(s)	208, 442
EcoNI	CCTNNNNNAGG	2 cut(s)	698, 1452
EcoO109I	RGGNCCY	2 cut(s)	563, 1497
EcoRI	GAATTC	2 cut(s)	814, 1084
EcoRII	CCWGG	5 cut(s)	576, 1413, 1479, 1499, 2094
EcoT14I	CCWWGG	2 cut(s)	1579, 1797
EgeI	GGCGCC	1 cut(s)	692
EheI	GGCGCC	1 cut(s)	692
ErhI	CCWWGG	2 cut(s)	1579, 1797
FalI	AAGNNNNNCTT	2 cut(s)	1631, 1663
FaqI	GGGAC	2 cut(s)	2116, 2174
Fnu4HI	GCNGC	5 cut(s)	267, 794, 2007, 2078, 2081
FokI	GGATG	6 cut(s)	292, 743, 1025, 1205, 1431, 1472
Fsp4HI	GCNGC	5 cut(s)	267, 794, 2007, 2078, 2081
FspBI	CTAG	7 cut(s)	132, 485, 800, 1440, 1454, 1580, 2197
GlaI	GCGC	2 cut(s)	692, 1551
GluI	GCNGC	5 cut(s)	267, 794, 2007, 2078, 2081
GsuI	CTGGAG	1 cut(s)	728
HaeII	RGCGCY	2 cut(s)	694, 1553
HaeIII	GGCC	6 cut(s)	138, 1464, 1504, 1659, 1754, 2099
HapII	CCGG	3 cut(s)	504, 520, 1299
HhaI	GCGC	2 cut(s)	693, 1552
Hin1I	GRCGYC	1 cut(s)	691
Hin6I	GCGC	2 cut(s)	691, 1550
HinP1I	GCGC	2 cut(s)	691, 1550
HincII	GTYRAC	1 cut(s)	1879
HindII	GTYRAC	1 cut(s)	1879
HpaI	GTTAAC	1 cut(s)	1879
HpaII	CCGG	3 cut(s)	504, 520, 1299
HphI	GGTGA	8 cut(s)	206, 518, 641, 727, 838, 1116, 1228, 1921
Hpy99I	CGWCG	1 cut(s)	888
HpyAV	CCTTC	9 cut(s)	82, 576, 673, 763, 973, 1168, 1541, 1648, 1804
HpyCH4III	ACNGT	5 cut(s)	1143, 1309, 1477, 1924, 2165
HpyCH4IV	ACGT	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1524
HpyF3I	CTNAG	7 cut(s)	140, 491, 636, 684, 1128, 1449, 2064
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	691
HspAI	GCGC	2 cut(s)	691, 1550
KasI	GGCGCC	1 cut(s)	690
KpnI	GGTACC	1 cut(s)	1366
KspAI	GTTAAC	1 cut(s)	1879
Kzo9I	GATC	8 cut(s)	61, 313, 450, 856, 964, 982, 2019, 2044
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	5 cut(s)	253, 780, 1993, 2067, 2089
LweI	GCATC	5 cut(s)	537, 721, 1044, 1309, 1413
MaeI	CTAG	7 cut(s)	132, 485, 800, 1440, 1454, 1580, 2197
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	6 cut(s)	5, 715, 958, 1232, 1519, 2068
MalI	GATC	8 cut(s)	63, 315, 452, 858, 966, 984, 2021, 2046
MbiI	CCGCTC	1 cut(s)	1569
MboI	GATC	8 cut(s)	61, 313, 450, 856, 964, 982, 2019, 2044
MflI	RGATCY	4 cut(s)	61, 450, 856, 982
MlsI	TGGCCA	1 cut(s)	2099
MluNI	TGGCCA	1 cut(s)	2099
Mly113I	GGCGCC	1 cut(s)	691
MlyI	GAGTC	3 cut(s)	1957, 2032, 2138
MmeI	TCCRAC	1 cut(s)	1577
Mox20I	TGGCCA	1 cut(s)	2099
MroXI	GAANNNNTTC	1 cut(s)	1203
MscI	TGGCCA	1 cut(s)	2099
MseI	TTAA	9 cut(s)	219, 543, 1041, 1107, 1334, 1713, 1731, 1878, 2115
MslI	CAYNNNNRTG	3 cut(s)	189, 350, 2052
Msp20I	TGGCCA	1 cut(s)	2099
MspA1I	CMGCKG	2 cut(s)	955, 2080
MspI	CCGG	3 cut(s)	504, 520, 1299
MspR9I	CCNGG	6 cut(s)	521, 578, 1415, 1481, 1501, 2096
MvaI	CCWGG	5 cut(s)	578, 1415, 1481, 1501, 2096
MwoI	GCNNNNNNNGC	1 cut(s)	1524
NarI	GGCGCC	1 cut(s)	691
NciI	CCSGG	1 cut(s)	521
NcoI	CCATGG	1 cut(s)	1797
NdeII	GATC	8 cut(s)	61, 313, 450, 856, 964, 982, 2019, 2044
NheI	GCTAGC	1 cut(s)	1439
NlaIV	GGNNCC	8 cut(s)	63, 564, 692, 984, 1364, 1498, 1585, 1947
NmuCI	GTSAC	2 cut(s)	715, 1519
NspI	RCATGY	4 cut(s)	104, 793, 835, 1527
PaeI	GCATGC	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	442
PagI	TCATGA	1 cut(s)	2022
PciSI	GCTCTTC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	1203
PfeI	GAWTC	7 cut(s)	337, 415, 592, 632, 1762, 1940, 2091
PinAI	ACCGGT	1 cut(s)	503
PkrI	GCNGC	5 cut(s)	268, 795, 2008, 2079, 2082
PleI	GAGTC	3 cut(s)	1957, 2032, 2137
PluTI	GGCGCC	1 cut(s)	694
PpsI	GAGTC	3 cut(s)	1957, 2032, 2137
PpuMI	RGGWCCY	2 cut(s)	563, 1497
PshAI	GACNNNNGTC	1 cut(s)	561
PshBI	ATTAAT	1 cut(s)	1107
PsiI	TTATAA	1 cut(s)	1269
Psp5II	RGGWCCY	2 cut(s)	563, 1497
Psp6I	CCWGG	5 cut(s)	576, 1413, 1479, 1499, 2094
PspGI	CCWGG	5 cut(s)	576, 1413, 1479, 1499, 2094
PspN4I	GGNNCC	8 cut(s)	63, 564, 692, 984, 1364, 1498, 1585, 1947
PspPI	GGNCC	6 cut(s)	501, 563, 1463, 1497, 1503, 1657
PspPPI	RGGWCCY	2 cut(s)	563, 1497
PspXI	VCTCGAGB	1 cut(s)	442
PsuI	RGATCY	4 cut(s)	61, 450, 856, 982
PvuII	CAGCTG	2 cut(s)	955, 2080
RsaI	GTAC	9 cut(s)	170, 206, 356, 382, 489, 872, 1364, 1627, 2167
RsaNI	GTAC	9 cut(s)	169, 205, 355, 381, 488, 871, 1363, 1626, 2166
RseI	CAYNNNNRTG	3 cut(s)	189, 350, 2052
Rsr2I	CGGWCCG	1 cut(s)	501
RsrII	CGGWCCG	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	9 cut(s)	219, 543, 1041, 1107, 1334, 1713, 1731, 1878, 2115
SatI	GCNGC	5 cut(s)	267, 794, 2007, 2078, 2081
Sau3AI	GATC	8 cut(s)	61, 313, 450, 856, 964, 982, 2019, 2044
Sau96I	GGNCC	6 cut(s)	501, 563, 1463, 1497, 1503, 1657
ScaI	AGTACT	1 cut(s)	489
SchI	GAGTC	3 cut(s)	1957, 2032, 2138
ScrFI	CCNGG	6 cut(s)	521, 578, 1415, 1481, 1501, 2096
SfaNI	GCATC	5 cut(s)	537, 721, 1044, 1309, 1413
SfoI	GGCGCC	1 cut(s)	692
Sfr274I	CTCGAG	1 cut(s)	442
SinI	GGWCC	3 cut(s)	501, 563, 1497
SlaI	CTCGAG	1 cut(s)	442
SmiMI	CAYNNNNRTG	3 cut(s)	189, 350, 2052
SmlI	CTYRAG	4 cut(s)	270, 442, 602, 1346
SmoI	CTYRAG	4 cut(s)	270, 442, 602, 1346
SpeI	ACTAGT	2 cut(s)	484, 799
SphI	GCATGC	1 cut(s)	104
SsiI	CCGC	2 cut(s)	1162, 1567
SspDI	GGCGCC	1 cut(s)	690
SspI	AATATT	1 cut(s)	1265
SspMI	CTAG	7 cut(s)	132, 485, 800, 1440, 1454, 1580, 2197
StyD4I	CCNGG	6 cut(s)	519, 576, 1413, 1479, 1499, 2094
StyI	CCWWGG	2 cut(s)	1579, 1797
TaaI	ACNGT	5 cut(s)	1143, 1309, 1477, 1924, 2165
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	4 cut(s)	340, 443, 1209, 2030
TatI	WGTACW	4 cut(s)	204, 354, 487, 870
TfiI	GAWTC	7 cut(s)	337, 415, 592, 632, 1762, 1940, 2091
Tru1I	TTAA	9 cut(s)	219, 543, 1041, 1107, 1334, 1713, 1731, 1878, 2115
Tru9I	TTAA	9 cut(s)	219, 543, 1041, 1107, 1334, 1713, 1731, 1878, 2115
TscAI	CASTG	3 cut(s)	993, 1146, 1189
TseFI	GTSAC	2 cut(s)	715, 1519
TseI	GCWGC	5 cut(s)	266, 793, 2006, 2077, 2080
Tsp45I	GTSAC	2 cut(s)	715, 1519
TspDTI	ATGAA	5 cut(s)	311, 867, 1123, 1418, 2039
TspGWI	ACGGA	4 cut(s)	98, 326, 514, 1220
TspRI	CASTG	3 cut(s)	993, 1146, 1189
VpaK11BI	GGWCC	3 cut(s)	501, 563, 1497
VspI	ATTAAT	1 cut(s)	1107
XagI	CCTNNNNNAGG	2 cut(s)	698, 1452
XapI	RAATTY	7 cut(s)	22, 617, 641, 814, 992, 1084, 1562
XceI	RCATGY	4 cut(s)	104, 793, 835, 1527
XhoI	CTCGAG	1 cut(s)	442
XmaJI	CCTAGG	1 cut(s)	1579
XmnI	GAANNNNTTC	1 cut(s)	1203
XspI	CTAG	7 cut(s)	132, 485, 800, 1440, 1454, 1580, 2197
ZrmI	AGTACT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.