Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000035.1

Orthogroup ID

OG0008471

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1944

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 563 bp

ctgaagcctacagtggctgcaatagaagcagggaaagacatagctttagccaataaggagaccctgattgctggaggcccttttgttcttcctcttgcacacaagcataatgtgaaaattcttcctgctgattcagaacattctgcaatttttcagtgtatccaaggcttgccagagggtgcacttcggcgtatcattttgacagcttctggtggggctttcagggattggcctgttgaaaaactcaaagaagttaaggttgctgatgctctgaaacatcctaactggagtatgggaaagaagataactgttgattcagctacgcttttcaataaggggctagaagtcattgaagcccattacttgtatggagctgagtatgatgatatcgagattgtgattcatccacaatccatcatccattcgatgattgaaactcaggattcatctgttctagcacagttggggtggcctgatatgcgcttgccaatcctctacaccatgtcatggccggagagaatctattgctctgaagtaacctggccccggcttgatctttgcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

187

Amino Acids

20.78

Weight (kDa)

5.79

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	1 - 26	1.5e-07	1-deoxy-D-xylulose 5-phosphate reductoisomerase
DXP_redisom_C	PF08436	40 - 123	4.3e-39	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
DXPR_C	PF13288	155 - 185	8e-06	DXP reductoisomerase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62790 AT5G62790
fragaria_vesca	FvH4_1g09716 FvH4_1g09717 FvH4_3g27741 FvH4_4g01210 FvH4_5g05300 FvH4_5g38682
malus_domestica	MD06G1174000.v1.1 MD14G1180500.v1.1
prunus_persica	Prupe.5G174000_v2.0.a1
pyrus_communis	pycom06g15530 pycom14g15050
rosa_chinensis	RchiOBHm_Chr7g0193571
rosa_laevigata	RLG00000004262
rosa_multiflora	Rmu_ssc0000035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262000
rosa_rugosa	Rorug07G0010200
rosa_samantha	Rh7AG137100 Rh7BG137400 Rh7CG140700 Rh7DG138500
rosa_wichuraiana	Rw7G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	507
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	2 cut(s)	23, 552
AfiI	CCNNNNNNNGG	2 cut(s)	507, 546
AgsI	TTSAA	4 cut(s)	239, 331, 353, 434
AjnI	CCWGG	1 cut(s)	539
AluBI	AGCT	4 cut(s)	44, 206, 320, 374
AluI	AGCT	4 cut(s)	44, 206, 320, 374
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	53
Alw44I	GTGCAC	1 cut(s)	180
AlwNI	CAGNNNCTG	2 cut(s)	17, 209
AoxI	GGCC	5 cut(s)	76, 230, 470, 509, 542
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	2 cut(s)	77, 543
AsuC2I	CCSGG	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	541
BciVI	GTATCC	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	341, 455
BfmI	CTRYAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	541, 547
BmgT120I	GGNCC	2 cut(s)	77, 543
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	2 cut(s)	541, 547
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	2 cut(s)	93, 307
BpuMI	CCSGG	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	163, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 546
Bse1I	ACTGG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	2 cut(s)	163, 545
BseGI	GGATG	3 cut(s)	277, 403, 417
BseLI	CCNNNNNNNGG	2 cut(s)	507, 546
BseMII	CTCAG	2 cut(s)	366, 452
BseNI	ACTGG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	4
BshFI	GGCC	5 cut(s)	78, 232, 472, 511, 544
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	512, 547
BslI	CCNNNNNNNGG	2 cut(s)	507, 546
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	5 cut(s)	78, 232, 472, 511, 544
Bso31I	GGTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	553
BspANI	GGCC	5 cut(s)	78, 232, 472, 511, 544
BspCNI	CTCAG	2 cut(s)	367, 451
BspLI	GGNNCC	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	163, 545
BssMI	GATC	1 cut(s)	553
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	3 cut(s)	13, 310, 462
BstC8I	GCNNGC	2 cut(s)	170, 485
BstDEI	CTNAG	2 cut(s)	375, 438
BstF5I	GGATG	3 cut(s)	277, 403, 417
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	1 cut(s)	556
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	553
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 478
BstNI	CCWGG	1 cut(s)	541
BstSCI	CCNGG	2 cut(s)	539, 545
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	5 cut(s)	78, 232, 472, 511, 544
BtsCI	GGATG	3 cut(s)	277, 403, 417
BtsIMutI	CAGTG	2 cut(s)	18, 161
Cac8I	GCNNGC	2 cut(s)	170, 485
CaiI	CAGNNNCTG	2 cut(s)	17, 209
CfoI	GCGC	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	77, 543
CviAII	CATG	2 cut(s)	502, 507
DdeI	CTNAG	2 cut(s)	375, 438
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
EaeI	YGGCCR	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	23, 552
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	539
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	505, 510
FaiI	YATR	8 cut(s)	41, 108, 293, 369, 381, 479, 503, 508
FatI	CATG	2 cut(s)	501, 506
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	3 cut(s)	264, 390, 404
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	341, 455
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	2 cut(s)	93, 307
HaeIII	GGCC	5 cut(s)	78, 232, 472, 511, 544
HapII	CCGG	2 cut(s)	512, 547
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	2 cut(s)	505, 510
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	5 cut(s)	131, 314, 400, 443, 519
HpaII	CCGG	2 cut(s)	512, 547
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	3 cut(s)	136, 273, 532
Hpy188III	TCNNGA	2 cut(s)	391, 440
Hpy8I	GTNNAC	1 cut(s)	182
HpyCH4III	ACNGT	3 cut(s)	13, 310, 462
HpyCH4V	TGCA	5 cut(s)	20, 98, 146, 182, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 478
HpyF3I	CTNAG	2 cut(s)	375, 438
Hsp92II	CATG	2 cut(s)	505, 510
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	341, 455
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	1 cut(s)	555
MboI	GATC	1 cut(s)	553
MboII	GAAGA	3 cut(s)	80, 113, 313
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	2 cut(s)	117, 147
MnlI	CCTC	4 cut(s)	68, 102, 169, 503
MseI	TTAA	1 cut(s)	255
MspI	CCGG	2 cut(s)	512, 547
MspR9I	CCNGG	2 cut(s)	541, 547
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	2 cut(s)	26, 478
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	1 cut(s)	553
NlaIII	CATG	2 cut(s)	505, 510
NlaIV	GGNNCC	1 cut(s)	545
PfeI	GAWTC	5 cut(s)	131, 314, 400, 443, 519
PflMI	CCANNNNNTGG	1 cut(s)	507
PkrI	GCNGC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	1 cut(s)	545
PspPI	GGNCC	2 cut(s)	77, 543
PstNI	CAGNNNCTG	2 cut(s)	17, 209
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	553
Sau96I	GGNCC	2 cut(s)	77, 543
ScrFI	CCNGG	2 cut(s)	541, 547
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	6 cut(s)	46, 208, 261, 322, 376, 542
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	117, 147
SspMI	CTAG	2 cut(s)	341, 455
StyD4I	CCNGG	2 cut(s)	539, 545
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	13, 310, 462
TaqI	TCGA	2 cut(s)	390, 425
TasI	AATT	2 cut(s)	117, 147
TfiI	GAWTC	5 cut(s)	131, 314, 400, 443, 519
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	18, 161
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	392, 435
TspRI	CASTG	2 cut(s)	18, 161
Van91I	CCANNNNNTGG	1 cut(s)	507
VneI	GTGCAC	1 cut(s)	180
XapI	RAATTY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XspI	CTAG	2 cut(s)	341, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.