Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000042.1

Orthogroup ID

OG0003584

Physical Location & Seq

Genomic Coordinates Forward (+)

141841 .. 165838

Gene Structure 23998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3315 bp

atggacattgataaggaactcctcgccgccccaatcaaatccgccaaggacaaattcgcactcattcccgagtttctaaaggtgagagggttggtaaagcagcatttggactcgtttaattactttgtcaacactggaatcaagaaaattgtgcgtgccaatgatcgcatagtttccggcgtcgatccaagcatttggctcaggtttaataatatctatattgataagccctcactgacaactgatggtgtcactaccgaaatcgctccccatacatgtcgtttatctgatatgacgtattctgctccaataagagtcgatgtagagtacgttgaaggaagtcacgatcaaaagaggatagtgaccaggaaagctgtcgaaattgcaagaatgcctatcatgttacggagttgctgctgtaccttatatggaaaaacggaatccgaacttgcaattcttggtgagtgcccacttgatcctggagggtattttatcatcaaagggaatgagaaggtgcttttgatacaagaacagctttcaaaaaacaggattatcattgacatggataagaagggaaacgtaaatgcttctgttacaagcagttcagagacaattaaaagcaagactgtaattcagatggaaaaacagaagatctatttggatcttaatcaattttccaaaaagattcctattatggtggtcatgaaggctatgggaatgactagtgatcaagaagttgtacagatggttggaagagatcctcgatatggtgccctgctcatgccatctattgaggaatgcgcaaaggaaggtatatatacaaaagagcaagcactgctgtatctcgaatcaaaggtgaagaggtccatgtttgatcgtccttcatccgataatgactgtaaagtaatggcagttcttcgagatatatttattgctaatgttccggtatgccggtccaattttcgtccaaaatgcatatatgttgctgtcatgttgaggcgcataatggatgcaattttaaacaaggatgcgatggatgacaaggattatgttgggaacaagcggcttgagctatctgggcaatctatttctcttctgtttgagtacatacgcaaagatagtatttcacatggccttgaaagaaccctttctactggaaactttgatctcaaacggttcaggatgcacaggacaggcatgacacaggtgctagctaggttatctttcattgggtctctaggccaaatgaccagaacaaaaccgcagtttgagaagtcacgaaaagtgagtggacctagagccttgcaacctagccagtggggcatgctttgcccttgtgacactccagaaggtgaagcatgtggactggtaaaaaatttagccctgatggcccatgtaacaactgatgaagaggagggccctctaatatctctgtgcaaatgcttgggtgtggaagatttggaaacactatcggcagaggagcttcactcacccaattcttttctggttttattcaatggagacatcctcggaaagcacaggaagccacagcgttttgccactgcaatgagaaagttgcgtagagctgggaagattggagaatttgttagcgtctttgtcaatgagaagcagcattgtgtttacattgcttctgatggcggtcgagtttgtcggccactagttatcgctgacaagggcatttcaagagtcaaagaatatcacatgcaggagctgaatgctggggtccgtacttttaatgactttttaagtgacgggttgatcgagtatcttgatgttaacgagcagaataatgctttgattgctctatacgaagatgaggcaacaacagaaactactcatatagaaatagagcctttcaccatcttaggtgttattgctgggctaattccgtatcctcaccacaatcagtcgcctagaaatacttaccagtgtgcaatggggaagcaagcaatggggaatatcgcatataaccaggcaagtcttcgtcggatagacttgctttaccttctggtgtatccccaacgaccattattgacaacaaagaccattgagctggtgggctttgataaactcggagctgggcagaatgcaactgttgctgtgatgagttatagtggctatgacatagaggatgcaatcgtcatgaacaaggcatctctggatcgtggttttggtcgttgtattcttatgaaaaagtttgttgtcgccaatcaaaattataacaataacacacaagacagaataatcaggccaagtaaagatgaagttgattctggaaagatgcaggttctcgatgatgatggtattgctgcacctggggaaattattagatcaaatgacatctatgtaaagaagcaggtccctattgtcacaaggggggctattagatcgggattaaaggatagtgagtatcggtctgcctttcaaaaatataaaggacctgatggggagtcttgtgtggtggataaagtagctctcttttctgatacacataataatttatgtgttaaagtattgattcgccatactcgtagaccagaggttggtgacaagtttagtagcagacatgggcagaaaggtgtttgtggtacaattgtccagcaggaagatttcccattttctgaacgtggcatttgccctgatttaatcatgaaccctcatggatttccaagccgaatgactgttggcaagatgattgagcttcttgggggtaaagcaggagtttcatgtggtaggtttcattatggtagtgcctttggtgaaccaagtggtcatgcagacaaggttgaggctataagtgaaacacttgtgaggatgggatttagctatgatggcaaagacttcttatgctcaggaatcactggttgcccattgcaagcatatattttcatgggaccaatttactaccagaagttaaaacacatggtccttgataaaatgcatgcacgtggtagtggtcccagagtcagtctaactagacagcctactgagggaaaagctcgtaatggaggactacgagtaggagaaatggagcgtgattgtctgattgcttatggtgccagtatgttgctgtatgagcgcctaatgatctctagtgatcctttcgaaattcaggtttgcagagtgtgtggtttattgggttattacaaccacaagatgaaagcgggaatttgttcctcatgcaaaaatggggataatatttctaccatgaagcttccctatgcttgcaagctcttgatccaggaactccagtcgatgaacattgttccccgcttaaaactagctgaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006383 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1104

Amino Acids

123.4

Weight (kDa)

8.77

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	30 - 312	7.2e-48	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	181 - 357	4.3e-22	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	402 - 466	5.7e-19	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	503 - 563	2.3e-23	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6	PF00562	632 - 1008	1.8e-133	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	1010 - 1100	1.1e-30	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45140 AT5G45140 AT5G45140
fragaria_vesca	FvH4_5g31720 FvH4_7g03930
malus_domestica	MD14G1029000.v1.1
prunus_persica	Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1
pyrus_communis	pycom14g02710
rosa_chinensis	RchiOBHm_Chr1g0327591 RchiOBHm_Chr7g0227611
rosa_laevigata	RLG00000001632 RLG00000029981
rosa_multiflora	Rmu_co8491793.1_g000001 Rmu_sc0001772.1_g000005 Rmu_ssc0000042.1_g000027
rosa_roxburghii	Rroxscaffold_3G00232000 Rroxscaffold_4G00322550
rosa_rugosa	Rorug01G0068500 Rorug07G0242400
rosa_samantha	Rh1AG085800 Rh1BG068400 Rh1CG083300 Rh1DG090000 Rh7AG395800 Rh7BG377500 Rh7CG414500 Rh7DG391600
rosa_wichuraiana	Rw1G006690 Rw7G032920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2241
Acc16I	TGCGCA	1 cut(s)	802
Acc36I	ACCTGC	2 cut(s)	2296, 2368
AccB1I	GGYRCC	2 cut(s)	770, 3077
AccB7I	CCANNNNNTGG	1 cut(s)	2564
AccI	GTMKAC	1 cut(s)	2554
AciI	CCGC	7 cut(s)	27, 42, 1063, 1262, 1659, 3185, 3292
AclWI	GGATC	7 cut(s)	179, 470, 669, 752, 2190, 3113, 3253
AcoI	YGGCCR	1 cut(s)	1673
AcsI	RAATTY	5 cut(s)	53, 1375, 1601, 3129, 3189
AcvI	CACGTG	1 cut(s)	2969
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	6 cut(s)	329, 421, 741, 1106, 1750, 2611
AfiI	CCNNNNNNNGG	3 cut(s)	767, 2564, 3011
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	6 cut(s)	335, 540, 1139, 1516, 1704, 2447
AhlI	ACTAGT	2 cut(s)	722, 1678
AjnI	CCWGG	5 cut(s)	365, 478, 1992, 2335, 3261
AjuI	GAANNNNNNNTTGG	4 cut(s)	38, 70, 641, 673
Alw26I	GTCTC	3 cut(s)	602, 1239, 1515
AlwI	GGATC	7 cut(s)	179, 470, 669, 752, 2190, 3113, 3253
AlwNI	CAGNNNCTG	1 cut(s)	1732
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	6 cut(s)	1132, 1240, 1389, 1417, 1673, 2270
ApaI	GGGCCC	1 cut(s)	1421
ApeKI	GCWGC	4 cut(s)	100, 414, 1630, 2330
ApoI	RAATTY	5 cut(s)	53, 1375, 1601, 3129, 3189
Asp700I	GAANNNNTTC	2 cut(s)	1147, 3193
AspLEI	GCGC	3 cut(s)	803, 1002, 3102
AsuHPI	GGTGA	9 cut(s)	94, 473, 868, 1364, 1482, 1870, 1910, 2579, 2792
AsuII	TTCGAA	1 cut(s)	3126
AsuNHI	GCTAGC	1 cut(s)	1210
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	9 cut(s)	864, 954, 1292, 1744, 2380, 2459, 2915, 2947, 2978
BaeGI	GKGCMC	3 cut(s)	470, 775, 1421
BaeI	ACNNNNGTAYC	4 cut(s)	824, 857, 2601, 2634
BanI	GGYRCC	2 cut(s)	770, 3077
BanII	GRGCYC	1 cut(s)	1421
BbrPI	CACGTG	1 cut(s)	2969
BbsI	GAAGAC	1 cut(s)	1994
BbvI	GCAGC	4 cut(s)	112, 401, 1642, 2317
BciT130I	CCWGG	5 cut(s)	367, 480, 1994, 2337, 3263
BciVI	GTATCC	2 cut(s)	1923, 2046
BclI	TGATCA	1 cut(s)	727
BcoDI	GTCTC	3 cut(s)	602, 1239, 1515
BcuI	ACTAGT	2 cut(s)	722, 1678
BfoI	RGCGCY	1 cut(s)	3103
BfuAI	ACCTGC	2 cut(s)	2296, 2368
BfuI	GTATCC	2 cut(s)	1923, 2046
BglI	GCCNNNNNGGC	2 cut(s)	1320, 1388
BglII	AGATCT	1 cut(s)	651
BisI	GCNGC	6 cut(s)	27, 101, 415, 1064, 1631, 2331
BlsI	GCNGC	6 cut(s)	28, 102, 416, 1065, 1632, 2332
Bme1390I	CCNGG	5 cut(s)	367, 480, 1994, 2337, 3263
Bme18I	GGWCC	9 cut(s)	864, 954, 1292, 1744, 2380, 2459, 2915, 2947, 2978
BmeT110I	CYCGRG	1 cut(s)	68
BmiI	GGNNCC	7 cut(s)	772, 1419, 1745, 2382, 2916, 2980, 3079
BmrFI	CCNGG	5 cut(s)	367, 480, 1994, 2337, 3263
BmsI	GCATC	6 cut(s)	1000, 1018, 1173, 2143, 2183, 2292
BmtI	GCTAGC	1 cut(s)	1214
BpiI	GAAGAC	1 cut(s)	1994
BplI	GAGNNNNNCTC	4 cut(s)	1472, 1504, 1512, 1544
BpmI	CTGGAG	3 cut(s)	501, 1329, 3254
Bpu10I	CCTNAGC	2 cut(s)	200, 2872
Bpu14I	TTCGAA	1 cut(s)	3126
BpuEI	CTTGAG	1 cut(s)	1088
BsaAI	YACGTR	1 cut(s)	2969
BsaBI	GATNNNNATC	1 cut(s)	666
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	1239
BsaJI	CCNNGG	3 cut(s)	45, 1528, 2336
BsaWI	WCCGGW	1 cut(s)	943
BsaXI	ACNNNNNCTCC	2 cut(s)	1590, 1620
Bsc4I	CCNNNNNNNGG	3 cut(s)	767, 2564, 3011
Bse118I	RCCGGY	1 cut(s)	951
Bse1I	ACTGG	8 cut(s)	139, 1159, 1315, 1371, 1948, 2887, 3081, 3271
Bse3DI	GCAATG	5 cut(s)	1572, 1644, 1962, 1977, 2891
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	5 cut(s)	367, 480, 1994, 2337, 3263
BseDI	CCNNGG	3 cut(s)	45, 1528, 2336
BseGI	GGATG	8 cut(s)	884, 1015, 1033, 1042, 1188, 1524, 2158, 2841
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	3 cut(s)	767, 2564, 3011
BseMI	GCAATG	5 cut(s)	1572, 1644, 1962, 1977, 2891
BseMII	CTCAG	3 cut(s)	214, 2886, 3000
BseNI	ACTGG	8 cut(s)	139, 1159, 1315, 1371, 1948, 2887, 3081, 3271
BseRI	GAGGAG	3 cut(s)	11, 1427, 1493
BseSI	GKGCMC	3 cut(s)	470, 775, 1421
BseXI	GCAGC	4 cut(s)	112, 401, 1642, 2317
BseYI	CCCAGC	4 cut(s)	1586, 1739, 1898, 2099
BsgI	GTGCAG	1 cut(s)	2316
Bsh1285I	CGRYCG	1 cut(s)	1663
BshFI	GGCC	6 cut(s)	1134, 1242, 1391, 1419, 1675, 2272
BshNI	GGYRCC	2 cut(s)	770, 3077
BsiEI	CGRYCG	1 cut(s)	1663
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	177, 944, 952
BslFI	GGGAC	3 cut(s)	2366, 2928, 2964
BslI	CCNNNNNNNGG	3 cut(s)	767, 2564, 3011
BsmAI	GTCTC	3 cut(s)	602, 1239, 1515
BsmFI	GGGAC	3 cut(s)	2366, 2928, 2964
BsmI	GAATGC	4 cut(s)	396, 803, 1741, 2113
BsnI	GGCC	6 cut(s)	1134, 1242, 1391, 1419, 1675, 2272
Bso31I	GGTCTC	1 cut(s)	1239
BsoBI	CYCGRG	1 cut(s)	68
Bsp119I	TTCGAA	1 cut(s)	3126
Bsp120I	GGGCCC	1 cut(s)	1417
Bsp1286I	GDGCHC	3 cut(s)	470, 775, 1421
Bsp1407I	TGTACA	1 cut(s)	739
BspACI	CCGC	7 cut(s)	27, 42, 1063, 1262, 1659, 3185, 3292
BspANI	GGCC	6 cut(s)	1134, 1242, 1391, 1419, 1675, 2272
BspCNI	CTCAG	3 cut(s)	213, 2885, 3001
BspHI	TCATGA	3 cut(s)	702, 2163, 2670
BspLI	GGNNCC	7 cut(s)	772, 1419, 1745, 2382, 2916, 2980, 3079
BspMI	ACCTGC	2 cut(s)	2296, 2368
BspOI	GCTAGC	1 cut(s)	1214
BspPI	GGATC	7 cut(s)	179, 470, 669, 752, 2190, 3113, 3253
BspT104I	TTCGAA	1 cut(s)	3126
BspT107I	GGYRCC	2 cut(s)	770, 3077
BspTNI	GGTCTC	1 cut(s)	1239
BsrDI	GCAATG	5 cut(s)	1572, 1644, 1962, 1977, 2891
BsrFI	RCCGGY	1 cut(s)	951
BsrGI	TGTACA	1 cut(s)	739
BsrI	ACTGG	8 cut(s)	139, 1159, 1315, 1371, 1948, 2887, 3081, 3271
BssAI	RCCGGY	1 cut(s)	951
BssECI	CCNNGG	3 cut(s)	45, 1528, 2336
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	5 cut(s)	367, 480, 1994, 2337, 3263
Bst4CI	ACNGT	5 cut(s)	628, 899, 1176, 2116, 2704
Bst6I	CTCTTC	4 cut(s)	748, 854, 1098, 1404
BstACI	GRCGYC	1 cut(s)	180
BstAPI	GCANNNNNTGC	3 cut(s)	835, 1329, 2117
BstAUI	TGTACA	1 cut(s)	739
BstBAI	YACGTR	1 cut(s)	2969
BstBI	TTCGAA	1 cut(s)	3126
BstC8I	GCNNGC	9 cut(s)	156, 831, 1212, 1325, 1968, 2898, 2964, 3247, 3251
BstDEI	CTNAG	4 cut(s)	200, 1885, 2872, 3009
BstF5I	GGATG	8 cut(s)	884, 1015, 1033, 1042, 1188, 1524, 2158, 2841
BstH2I	RGCGCY	1 cut(s)	3103
BstHHI	GCGC	3 cut(s)	803, 1002, 3102
BstMAI	GTCTC	3 cut(s)	602, 1239, 1515
BstMCI	CGRYCG	1 cut(s)	1663
BstNI	CCWGG	5 cut(s)	367, 480, 1994, 2337, 3263
BstNSI	RCATGY	5 cut(s)	279, 1327, 1362, 1726, 2966
BstSCI	CCNGG	5 cut(s)	365, 478, 1992, 2335, 3261
BstSLI	GKGCMC	3 cut(s)	470, 775, 1421
BstV1I	GCAGC	4 cut(s)	112, 401, 1642, 2317
BstV2I	GAAGAC	1 cut(s)	1994
BstX2I	RGATCY	3 cut(s)	651, 661, 757
BstXI	CCANNNNNNTGG	2 cut(s)	195, 2074
BstYI	RGATCY	3 cut(s)	651, 661, 757
BsuI	GTATCC	2 cut(s)	1923, 2046
BsuRI	GGCC	6 cut(s)	1134, 1242, 1391, 1419, 1675, 2272
BtgZI	GCGATG	1 cut(s)	1046
BtsCI	GGATG	8 cut(s)	884, 1015, 1033, 1042, 1188, 1524, 2158, 2841
BtsI	GCAGTG	2 cut(s)	833, 1560
BtsIMutI	CAGTG	7 cut(s)	132, 233, 833, 1322, 1560, 1955, 2880
BveI	ACCTGC	2 cut(s)	2296, 2368
Cac8I	GCNNGC	9 cut(s)	156, 831, 1212, 1325, 1968, 2898, 2964, 3247, 3251
CaiI	CAGNNNCTG	1 cut(s)	1732
CciI	TCATGA	3 cut(s)	702, 2163, 2670
CfoI	GCGC	3 cut(s)	803, 1002, 3102
Cfr10I	RCCGGY	1 cut(s)	951
CseI	GACGC	2 cut(s)	169, 1600
Csp6I	GTAC	6 cut(s)	328, 420, 740, 1105, 1749, 2610
CviQI	GTAC	6 cut(s)	328, 420, 740, 1105, 1749, 2610
DdeI	CTNAG	4 cut(s)	200, 1885, 2872, 3009
DraI	TTTAAA	1 cut(s)	1020
EaeI	YGGCCR	1 cut(s)	1673
Eam1104I	CTCTTC	4 cut(s)	748, 854, 1098, 1404
EarI	CTCTTC	4 cut(s)	748, 854, 1098, 1404
EciI	GGCGGA	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	1421
Eco31I	GGTCTC	1 cut(s)	1239
Eco47I	GGWCC	9 cut(s)	864, 954, 1292, 1744, 2380, 2459, 2915, 2947, 2978
Eco72I	CACGTG	1 cut(s)	2969
Eco88I	CYCGRG	1 cut(s)	68
EcoO109I	RGGNCCY	4 cut(s)	1417, 1418, 2380, 2459
EcoRII	CCWGG	5 cut(s)	365, 478, 1992, 2335, 3261
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	2 cut(s)	977, 2964
EcoT38I	GRGCYC	1 cut(s)	1421
ErhI	CCWWGG	1 cut(s)	45
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	3 cut(s)	2366, 2928, 2964
FauI	CCCGC	2 cut(s)	3178, 3299
FbaI	TGATCA	1 cut(s)	727
FblI	GTMKAC	1 cut(s)	2554
Fnu4HI	GCNGC	6 cut(s)	27, 101, 415, 1064, 1631, 2331
FokI	GGATG	8 cut(s)	871, 1022, 1040, 1049, 1195, 1511, 2165, 2848
FriOI	GRGCYC	1 cut(s)	1421
Fsp4HI	GCNGC	6 cut(s)	27, 101, 415, 1064, 1631, 2331
FspI	TGCGCA	1 cut(s)	802
GlaI	GCGC	3 cut(s)	802, 1001, 3101
GluI	GCNGC	6 cut(s)	27, 101, 415, 1064, 1631, 2331
GsaI	CCCAGC	4 cut(s)	1590, 1743, 1902, 2103
GsuI	CTGGAG	3 cut(s)	501, 1329, 3254
HaeII	RGCGCY	1 cut(s)	3103
HaeIII	GGCC	6 cut(s)	1134, 1242, 1391, 1419, 1675, 2272
HapII	CCGG	3 cut(s)	177, 944, 952
HgaI	GACGC	2 cut(s)	169, 1600
HhaI	GCGC	3 cut(s)	803, 1002, 3102
Hin1I	GRCGYC	1 cut(s)	180
Hin6I	GCGC	3 cut(s)	801, 1000, 3100
HinP1I	GCGC	3 cut(s)	801, 1000, 3100
HincII	GTYRAC	2 cut(s)	130, 1798
HindII	GTYRAC	2 cut(s)	130, 1798
HindIII	AAGCTT	2 cut(s)	3233, 3309
HpaI	GTTAAC	1 cut(s)	1798
HpaII	CCGG	3 cut(s)	177, 944, 952
HphI	GGTGA	9 cut(s)	94, 473, 868, 1364, 1482, 1870, 1910, 2579, 2792
Hpy166II	GTNNAC	7 cut(s)	130, 1292, 1364, 1642, 1798, 2555, 2783
Hpy8I	GTNNAC	7 cut(s)	130, 1292, 1364, 1642, 1798, 2555, 2783
Hpy99I	CGWCG	2 cut(s)	185, 2010
HpyAV	CCTTC	8 cut(s)	329, 505, 565, 700, 803, 891, 1343, 2036
HpyCH4III	ACNGT	5 cut(s)	628, 899, 1176, 2116, 2704
HpyCH4IV	ACGT	5 cut(s)	296, 330, 579, 2647, 2968
HpyF3I	CTNAG	4 cut(s)	200, 1885, 2872, 3009
HpySE526I	ACGT	5 cut(s)	296, 330, 579, 2647, 2968
Hsp92I	GRCGYC	1 cut(s)	180
HspAI	GCGC	3 cut(s)	801, 1000, 3100
Ksp22I	TGATCA	1 cut(s)	727
KspAI	GTTAAC	1 cut(s)	1798
LmnI	GCTCC	6 cut(s)	271, 310, 1480, 1729, 2096, 3052
Lsp1109I	GCAGC	4 cut(s)	112, 401, 1642, 2317
LweI	GCATC	6 cut(s)	1000, 1018, 1173, 2143, 2183, 2292
MaeII	ACGT	5 cut(s)	296, 330, 579, 2647, 2968
MfeI	CAATTG	1 cut(s)	2613
MflI	RGATCY	3 cut(s)	651, 661, 757
MhlI	GDGCHC	3 cut(s)	470, 775, 1421
MlyI	GAGTC	5 cut(s)	104, 324, 1716, 2480, 2994
MmeI	TCCRAC	2 cut(s)	730, 1988
Mph1103I	ATGCAT	2 cut(s)	977, 2964
MroXI	GAANNNNTTC	2 cut(s)	1147, 3193
MslI	CAYNNNNRTG	3 cut(s)	560, 1565, 2967
MspI	CCGG	3 cut(s)	177, 944, 952
MspR9I	CCNGG	5 cut(s)	367, 480, 1994, 2337, 3263
MunI	CAATTG	1 cut(s)	2613
Mva1269I	GAATGC	4 cut(s)	396, 803, 1741, 2113
MvaI	CCWGG	5 cut(s)	367, 480, 1994, 2337, 3263
NheI	GCTAGC	1 cut(s)	1210
NlaIV	GGNNCC	7 cut(s)	772, 1419, 1745, 2382, 2916, 2980, 3079
NmuCI	GTSAC	8 cut(s)	250, 341, 361, 1275, 1337, 1769, 2389, 2567
NsbI	TGCGCA	1 cut(s)	802
NsiI	ATGCAT	2 cut(s)	977, 2964
NspI	RCATGY	5 cut(s)	279, 1327, 1362, 1726, 2966
NspV	TTCGAA	1 cut(s)	3126
PaeI	GCATGC	2 cut(s)	1327, 2966
PagI	TCATGA	3 cut(s)	702, 2163, 2670
PciI	ACATGT	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	2 cut(s)	1779, 2548
PctI	GAATGC	4 cut(s)	396, 803, 1741, 2113
PdmI	GAANNNNTTC	2 cut(s)	1147, 3193
PfeI	GAWTC	7 cut(s)	138, 440, 685, 848, 2291, 2539, 2877
PflMI	CCANNNNNTGG	1 cut(s)	2564
PfoI	TCCNGGA	2 cut(s)	478, 3261
PkrI	GCNGC	6 cut(s)	28, 102, 416, 1065, 1632, 2332
PleI	GAGTC	5 cut(s)	104, 323, 1715, 2479, 2993
PmaCI	CACGTG	1 cut(s)	2969
PmlI	CACGTG	1 cut(s)	2969
PpsI	GAGTC	5 cut(s)	104, 323, 1715, 2479, 2993
Ppu21I	YACGTR	1 cut(s)	2969
PpuMI	RGGWCCY	2 cut(s)	2380, 2459
PscI	ACATGT	1 cut(s)	275
PsiI	TTATAA	1 cut(s)	2241
Psp5II	RGGWCCY	2 cut(s)	2380, 2459
Psp6I	CCWGG	5 cut(s)	365, 478, 1992, 2335, 3261
PspCI	CACGTG	1 cut(s)	2969
PspFI	CCCAGC	4 cut(s)	1586, 1739, 1898, 2099
PspGI	CCWGG	5 cut(s)	365, 478, 1992, 2335, 3261
PspN4I	GGNNCC	7 cut(s)	772, 1419, 1745, 2382, 2916, 2980, 3079
PspOMI	GGGCCC	1 cut(s)	1417
PspPPI	RGGWCCY	2 cut(s)	2380, 2459
PsrI	GAACNNNNNNTAC	4 cut(s)	897, 929, 1135, 1167
PstNI	CAGNNNCTG	1 cut(s)	1732
PsuI	RGATCY	3 cut(s)	651, 661, 757
RsaI	GTAC	6 cut(s)	329, 421, 741, 1106, 1750, 2611
RsaNI	GTAC	6 cut(s)	328, 420, 740, 1105, 1749, 2610
RseI	CAYNNNNRTG	3 cut(s)	560, 1565, 2967
SatI	GCNGC	6 cut(s)	27, 101, 415, 1064, 1631, 2331
SchI	GAGTC	5 cut(s)	104, 324, 1716, 2480, 2994
ScrFI	CCNGG	5 cut(s)	367, 480, 1994, 2337, 3263
SduI	GDGCHC	3 cut(s)	470, 775, 1421
SfaNI	GCATC	6 cut(s)	1000, 1018, 1173, 2143, 2183, 2292
SfuI	TTCGAA	1 cut(s)	3126
SinI	GGWCC	9 cut(s)	864, 954, 1292, 1744, 2380, 2459, 2915, 2947, 2978
SmiMI	CAYNNNNRTG	3 cut(s)	560, 1565, 2967
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
SpeI	ACTAGT	2 cut(s)	722, 1678
SphI	GCATGC	2 cut(s)	1327, 2966
SsiI	CCGC	7 cut(s)	27, 42, 1063, 1262, 1659, 3185, 3292
SspI	AATATT	1 cut(s)	3220
StyD4I	CCNGG	5 cut(s)	365, 478, 1992, 2335, 3261
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	5 cut(s)	628, 899, 1176, 2116, 2704
TaiI	ACGT	5 cut(s)	299, 333, 582, 2650, 2971
TaqII	GACCGA	1 cut(s)	2424
TatI	WGTACW	2 cut(s)	739, 1104
TauI	GCSGC	2 cut(s)	29, 1066
TfiI	GAWTC	7 cut(s)	138, 440, 685, 848, 2291, 2539, 2877
TscAI	CASTG	7 cut(s)	139, 240, 840, 1322, 1567, 1955, 2887
TseFI	GTSAC	8 cut(s)	250, 341, 361, 1275, 1337, 1769, 2389, 2567
TseI	GCWGC	4 cut(s)	100, 414, 1630, 2330
Tsp45I	GTSAC	8 cut(s)	250, 341, 361, 1275, 1337, 1769, 2389, 2567
TspGWI	ACGGA	4 cut(s)	421, 452, 1736, 1899
TspRI	CASTG	7 cut(s)	139, 240, 840, 1322, 1567, 1955, 2887
Van91I	CCANNNNNTGG	1 cut(s)	2564
VpaK11BI	GGWCC	9 cut(s)	864, 954, 1292, 1744, 2380, 2459, 2915, 2947, 2978
XapI	RAATTY	5 cut(s)	53, 1375, 1601, 3129, 3189
XceI	RCATGY	5 cut(s)	279, 1327, 1362, 1726, 2966
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1501, 2074
XmiI	GTMKAC	1 cut(s)	2554
XmnI	GAANNNNTTC	2 cut(s)	1147, 3193
Zsp2I	ATGCAT	2 cut(s)	977, 2964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.