Rmu_ssc0000153.1_g000004

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000153.1
OG0013528
Physical Location & Seq
Reverse (-)
26187 .. 29763
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
atgggtcggttcagttacaaccacaattaccagccttactatggtaatcaggcgagtgggtggccggcgatgcggcctccggtggcccccctttatcctcctccgccgtacgtggagcaccagagtgccaagaaggtgaagaatgacgtcaacgtgcataaggacacgttgaggctggagattgatgagcagaaccctgatcagcatttggtctcgttcgttttcgatgccttgtatgatgggagcattactattctctactttgccaaggaagaggcagattgtacatttgttccactatttcctgaagcatttacaccggtgcaagtcccttttcagaaaggagtaggccagaaattttgtcagccctcaggaacaggcatcgatttaggcttcttcgagttggatgatctgtcaaaaccctcacctggagaagatgtattcccacttgtaatatctgcggaaacacgtacgccgcctgattcaatcgaccatattggtgagcctgtccaagatgcatctcctcgtatgcagatcactcaagctgtgctagaaaaaaataatggtgaccctttccaagtgaaagtaattaagcagatactgtggattgatgaagttcgctatgaactacgtgagatatatggaattgcaacctcagcagtggaaggctttgatgacaatgaccctgggaaggagtgtgtaatatgcatgaccgaaccgaaggacactgctgtattaccttgtcgacatatgtgtatgtgcagtgactgtgcaaaagaattgaggattcaatccaataaatgccccatttgccggcaacccattgaagaacttatagagataaagatgaataaaagccagcaatga

Protein Analysis

288

Amino Acids

32.5

Weight (kDa)

4.82

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 50 - 210 2.4e-71 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 231 - 277 5.3e-18 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 232 - 272 9.8e-08 Ring finger domain
Prok-RING_4 PF14447 233 - 276 1.4e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06140
fragaria_vesca FvH4_4g14510
malus_domestica MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis pycom13g15860 pycom16g15470
rosa_chinensis RchiOBHm_Chr4g0418321
rosa_laevigata RLG00000007877
rosa_multiflora Rmu_ssc0000153.1_g000004
rosa_roxburghii Rroxscaffold_5G00361510
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana Rw4G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 745
AciI CCGC 4 cut(s) 73, 104, 461, 476
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 3 cut(s) 110, 286, 472
AfiI CCNNNNNNNGG 4 cut(s) 41, 428, 691, 813
AflIII ACRYGT 2 cut(s) 165, 467
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 486, 791, 827
AjnI CCWGG 2 cut(s) 427, 685
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 1 cut(s) 545
AluI AGCT 1 cut(s) 545
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 217
AlwNI CAGNNNCTG 2 cut(s) 601, 768
AoxI GGCC 4 cut(s) 62, 74, 84, 349
ApoI RAATTY 1 cut(s) 356
AsiGI ACCGGT 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 4 cut(s) 148, 417, 512, 578
AxyI CCTNAGG 1 cut(s) 370
Bbv12I GWGCWC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 655
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 2 cut(s) 429, 687
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 551
BisI GCNGC 2 cut(s) 74, 476
BlsI GCNGC 2 cut(s) 75, 477
Bme1390I CCNGG 2 cut(s) 429, 687
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 2 cut(s) 429, 687
BmsI GCATC 5 cut(s) 60, 217, 390, 505, 527
BpmI CTGGAG 2 cut(s) 197, 450
Bpu10I CCTNAGC 1 cut(s) 655
BpuEI CTTGAG 1 cut(s) 525
Bsa29I ATCGAT 1 cut(s) 384
BsaAI YACGTR 3 cut(s) 112, 470, 632
BsaHI GRCGYC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 267, 685, 686
BsaWI WCCGGW 2 cut(s) 79, 319
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 428, 691, 813
Bse118I RCCGGY 3 cut(s) 64, 319, 813
Bse21I CCTNAGG 1 cut(s) 370
BseBI CCWGG 2 cut(s) 429, 687
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 3 cut(s) 267, 685, 686
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 4 cut(s) 41, 428, 691, 813
BseMII CTCAG 2 cut(s) 384, 669
BseRI GAGGAG 2 cut(s) 90, 513
BsgI GTGCAG 1 cut(s) 781
BshFI GGCC 4 cut(s) 64, 76, 86, 351
BshTI ACCGGT 1 cut(s) 319
BshVI ATCGAT 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 4 cut(s) 65, 80, 320, 814
BsiWI CGTACG 2 cut(s) 108, 470
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 4 cut(s) 41, 428, 691, 813
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 4 cut(s) 64, 76, 86, 351
Bso31I GGTCTC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 284
Bsp143I GATC 3 cut(s) 199, 409, 534
BspACI CCGC 4 cut(s) 73, 104, 461, 476
BspANI GGCC 4 cut(s) 64, 76, 86, 351
BspCNI CTCAG 2 cut(s) 383, 668
BspDI ATCGAT 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 217
BsrFI RCCGGY 3 cut(s) 64, 319, 813
BsrGI TGTACA 1 cut(s) 284
BssAI RCCGGY 3 cut(s) 64, 319, 813
BssECI CCNNGG 3 cut(s) 267, 685, 686
BssMI GATC 3 cut(s) 199, 409, 534
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 429, 687
Bst4CI ACNGT 2 cut(s) 603, 770
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 147
BstAUI TGTACA 1 cut(s) 284
BstBAI YACGTR 3 cut(s) 112, 470, 632
BstC8I GCNNGC 3 cut(s) 66, 815, 860
BstDEI CTNAG 2 cut(s) 370, 655
BstEII GGTNACC 1 cut(s) 566
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 3 cut(s) 202, 412, 537
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 3 cut(s) 199, 409, 534
BstMWI GCNNNNNNNGC 3 cut(s) 70, 656, 810
BstNI CCWGG 2 cut(s) 429, 687
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 427, 685
Bsu15I ATCGAT 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 370
BsuRI GGCC 4 cut(s) 64, 76, 86, 351
BsuTUI ATCGAT 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 83
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 3 cut(s) 666, 726, 769
BtsIMutI CAGTG 3 cut(s) 666, 726, 769
Cac8I GCNNGC 3 cut(s) 66, 815, 860
CaiI CAGNNNCTG 2 cut(s) 601, 768
Cfr10I RCCGGY 3 cut(s) 64, 319, 813
Cfr13I GGNCC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 384
Csp6I GTAC 3 cut(s) 109, 285, 471
CspAI ACCGGT 1 cut(s) 319
CviAII CATG 1 cut(s) 709
CviQI GTAC 3 cut(s) 109, 285, 471
DdeI CTNAG 2 cut(s) 370, 655
DpnI GATC 3 cut(s) 201, 411, 536
DpnII GATC 3 cut(s) 199, 409, 534
EaeI YGGCCR 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EciI GGCGGA 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 370
Eco91I GGTNACC 1 cut(s) 566
EcoO65I GGTNACC 1 cut(s) 566
EcoRII CCWGG 2 cut(s) 427, 685
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 2 cut(s) 520, 710
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 712
FaqI GGGAC 1 cut(s) 314
FatI CATG 1 cut(s) 708
FauNDI CATATG 1 cut(s) 750
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 745
Fnu4HI GCNGC 2 cut(s) 74, 476
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 2 cut(s) 74, 476
FspBI CTAG 1 cut(s) 551
GluI GCNGC 2 cut(s) 74, 476
GsuI CTGGAG 2 cut(s) 197, 450
HaeIII GGCC 4 cut(s) 64, 76, 86, 351
HapII CCGG 4 cut(s) 65, 80, 320, 814
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 1 cut(s) 712
HincII GTYRAC 2 cut(s) 151, 746
HindII GTYRAC 2 cut(s) 151, 746
HinfI GANTC 2 cut(s) 482, 787
HpaII CCGG 4 cut(s) 65, 80, 320, 814
HphI GGTGA 4 cut(s) 148, 417, 512, 578
Hpy166II GTNNAC 2 cut(s) 151, 746
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 2 cut(s) 305, 372
Hpy8I GTNNAC 2 cut(s) 151, 746
HpyAV CCTTC 4 cut(s) 127, 659, 685, 715
HpyCH4III ACNGT 2 cut(s) 603, 770
HpyCH4IV ACGT 6 cut(s) 111, 147, 153, 167, 469, 631
HpyCH4V TGCA 8 cut(s) 157, 325, 518, 532, 650, 708, 762, 773
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 656, 810
HpyF3I CTNAG 2 cut(s) 370, 655
HpySE526I ACGT 6 cut(s) 111, 147, 153, 167, 469, 631
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 712
KroI GCCGGC 2 cut(s) 64, 813
KroNI GCCGGC 2 cut(s) 66, 815
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 199, 409, 534
LmnI GCTCC 2 cut(s) 115, 243
LweI GCATC 5 cut(s) 60, 217, 390, 505, 527
MaeI CTAG 1 cut(s) 551
MaeII ACGT 6 cut(s) 111, 147, 153, 167, 469, 631
MaeIII GTNAC 3 cut(s) 14, 566, 764
MalI GATC 3 cut(s) 201, 411, 536
MboI GATC 3 cut(s) 199, 409, 534
MboII GAAGA 5 cut(s) 151, 284, 388, 446, 839
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 5 cut(s) 25, 356, 588, 645, 779
MmeI TCCRAC 1 cut(s) 384
Mph1103I ATGCAT 2 cut(s) 520, 710
MroNI GCCGGC 2 cut(s) 64, 813
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 2 cut(s) 123, 498
MspI CCGG 4 cut(s) 65, 80, 320, 814
MspR9I CCNGG 2 cut(s) 429, 687
MvaI CCWGG 2 cut(s) 429, 687
MwoI GCNNNNNNNGC 3 cut(s) 70, 656, 810
NaeI GCCGGC 2 cut(s) 66, 815
NdeI CATATG 1 cut(s) 750
NdeII GATC 3 cut(s) 199, 409, 534
NgoMIV GCCGGC 2 cut(s) 64, 813
NlaIII CATG 1 cut(s) 712
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 566, 764
NsiI ATGCAT 2 cut(s) 520, 710
OliI CACNNNNGTG 1 cut(s) 123
PasI CCCWGGG 1 cut(s) 686
PdiI GCCGGC 2 cut(s) 66, 815
PfeI GAWTC 2 cut(s) 482, 787
Pfl23II CGTACG 2 cut(s) 108, 470
PinAI ACCGGT 1 cut(s) 319
PkrI GCNGC 2 cut(s) 75, 477
Ppu21I YACGTR 3 cut(s) 112, 470, 632
Psp6I CCWGG 2 cut(s) 427, 685
PspEI GGTNACC 1 cut(s) 566
PspGI CCWGG 2 cut(s) 427, 685
PspLI CGTACG 2 cut(s) 108, 470
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 85
PstNI CAGNNNCTG 2 cut(s) 601, 768
RsaI GTAC 3 cut(s) 110, 286, 472
RsaNI GTAC 3 cut(s) 109, 285, 471
RseI CAYNNNNRTG 2 cut(s) 123, 498
SalI GTCGAC 1 cut(s) 744
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 2 cut(s) 74, 476
Sau3AI GATC 3 cut(s) 199, 409, 534
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 429, 687
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 5 cut(s) 60, 217, 390, 505, 527
SgrAI CRCCGGYG 1 cut(s) 319
SmiMI CAYNNNNRTG 2 cut(s) 123, 498
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
Sse9I AATT 5 cut(s) 25, 356, 588, 645, 779
SsiI CCGC 4 cut(s) 73, 104, 461, 476
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 427, 685
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 603, 770
TaiI ACGT 6 cut(s) 114, 150, 156, 170, 472, 634
TaqI TCGA 5 cut(s) 225, 384, 399, 489, 745
TaqII GACCGA 1 cut(s) 728
TasI AATT 5 cut(s) 25, 356, 588, 645, 779
TatI WGTACW 1 cut(s) 284
TauI GCSGC 2 cut(s) 76, 478
TfiI GAWTC 2 cut(s) 482, 787
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 3 cut(s) 666, 733, 769
TseFI GTSAC 2 cut(s) 566, 764
Tsp45I GTSAC 2 cut(s) 566, 764
TspDTI ATGAA 3 cut(s) 627, 639, 863
TspRI CASTG 3 cut(s) 666, 733, 769
XapI RAATTY 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 745
XspI CTAG 1 cut(s) 551
ZraI GACGTC 1 cut(s) 148
Zsp2I ATGCAT 2 cut(s) 520, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.