Rmu_ssc0000183.1_g000046
ERF Family

Cupin superfamily (DUF985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000183.1
OG0013260
Physical Location & Seq
Reverse (-)
234079 .. 238359
4281 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 762 bp
atgacgatggagatagtgacgtacaatgtcaacggtcacgtcgaccacgacaagaccaccctccagcaagtccatcctggcctccacgacatccggcaacatctggagggtcgttctaattgcaatggggttgctgtcaagttgttatgggatgagatgaccttctccgtcgagggacaatggaacagtggttggggtcgagatcagctgagaggaggtgtgtcttgtgattttgttctacaaacgttgtttctgtcattaaaaaaagacacttccattctcctccccttgtgtcagctcccaccagactacaaggttgatcgccctgtgagtacagctatttacttcttgctgccaactggggatgtttcgcgccttcatcggataccgtgtgcagaaacatggcatttctacctgggagaacctcttacggtactggagttgaatgaggaagatgggaaagtcaaactaacaaacattggagcaaatttcattggagaggatcaggtaccccagtacacagtgcctccaaatgtttggtttggtgcatttcctacaaaggacttcaacatttcaccagatgggggggtgaccaaagctgctccaagggattctgagacccactactctctcgtgggatgcacttgtgcaccagcctttcagttccaggatttcgagttggcaaaacgctcagagctcattaagcacttccctgatagggagcctcttataacattgctaacagatcctgaaaaagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_5

Protein Analysis

253

Amino Acids

28.45

Weight (kDa)

5.22

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_5 PF06172 103 - 228 3.9e-31 Cupin superfamily (DUF985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19130
fragaria_vesca FvH4_1g09020
malus_domestica MD02G1095400.v1.1
prunus_persica Prupe.7G195700_v2.0.a1
pyrus_communis pycom02g07550
rosa_chinensis RchiOBHm_Chr2g0095441
rosa_laevigata RLG00000016566
rosa_multiflora Rmu_co8132630.1_g000001 Rmu_co8397589.1_g000001 Rmu_sc0010847.1_g000003 Rmu_ssc0000183.1_g000046
rosa_roxburghii Rroxscaffold_2G00146370
rosa_rugosa Rorug02G0051100
rosa_samantha Rh2AG099100 Rh2BG100300 Rh2CG102500 Rh2DG100000
rosa_wichuraiana Rw2G007500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
Acc65I GGTACC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 508
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 373
AclI AACGTT 1 cut(s) 245
AclWI GGATC 2 cut(s) 510, 740
AcsI RAATTY 1 cut(s) 487
AfaI GTAC 5 cut(s) 23, 334, 435, 510, 518
AfiI CCNNNNNNNGG 2 cut(s) 584, 718
AgsI TTSAA 2 cut(s) 445, 568
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 3 cut(s) 76, 414, 666
AluBI AGCT 5 cut(s) 208, 298, 338, 599, 697
AluI AGCT 5 cut(s) 208, 298, 338, 599, 697
Alw21I GWGCWC 2 cut(s) 652, 699
Alw26I GTCTC 1 cut(s) 611
Alw44I GTGCAC 1 cut(s) 648
AlwI GGATC 2 cut(s) 510, 740
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 1 cut(s) 79
ApaLI GTGCAC 1 cut(s) 648
ApeKI GCWGC 2 cut(s) 352, 599
ApoI RAATTY 1 cut(s) 487
Asp718I GGTACC 1 cut(s) 508
AspLEI GCGC 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 567, 601
BaeGI GKGCMC 1 cut(s) 652
BaeI ACNNNNGTAYC 4 cut(s) 425, 458, 500, 533
BanI GGYRCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 699
BauI CACGAG 1 cut(s) 632
Bbv12I GWGCWC 2 cut(s) 652, 699
BbvI GCAGC 2 cut(s) 339, 586
BccI CCATC 3 cut(s) 81, 449, 575
BciT130I CCWGG 3 cut(s) 78, 416, 668
BciVI GTATCC 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 611
BfuI GTATCC 1 cut(s) 378
BisI GCNGC 2 cut(s) 353, 600
BlsI GCNGC 2 cut(s) 354, 601
Bme1390I CCNGG 3 cut(s) 78, 416, 668
BmgBI CACGTC 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 510, 723
BmrFI CCNGG 3 cut(s) 78, 416, 668
BmrI ACTGGG 2 cut(s) 369, 508
BmsI GCATC 1 cut(s) 629
BmuI ACTGGG 2 cut(s) 369, 508
BpmI CTGGAG 3 cut(s) 47, 125, 458
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 415, 605
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 2 cut(s) 584, 718
Bse1I ACTGG 3 cut(s) 364, 441, 514
Bse3DI GCAATG 2 cut(s) 130, 734
BseBI CCWGG 3 cut(s) 78, 416, 668
BseDI CCNNGG 2 cut(s) 415, 605
BseGI GGATG 5 cut(s) 73, 90, 157, 370, 644
BseLI CCNNNNNNNGG 2 cut(s) 584, 718
BseMI GCAATG 2 cut(s) 130, 734
BseMII CTCAG 3 cut(s) 200, 606, 705
BseNI ACTGG 3 cut(s) 364, 441, 514
BseRI GAGGAG 2 cut(s) 228, 272
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 2 cut(s) 339, 586
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 373
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 508
BsiHKAI GWGCWC 2 cut(s) 652, 699
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 584, 718
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 611
Bsp1286I GDGCHC 2 cut(s) 652, 699
Bsp143I GATC 4 cut(s) 202, 319, 502, 745
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 3 cut(s) 201, 607, 704
BspFNI CGCG 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 510, 723
BspPI GGATC 2 cut(s) 510, 740
BspT107I GGYRCC 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 611
BsrDI GCAATG 2 cut(s) 130, 734
BsrI ACTGG 3 cut(s) 364, 441, 514
BssECI CCNNGG 2 cut(s) 415, 605
BssMI GATC 4 cut(s) 202, 319, 502, 745
BssSI CACGAG 1 cut(s) 632
BssT1I CCWWGG 1 cut(s) 605
Bst2BI CACGAG 1 cut(s) 632
Bst2UI CCWGG 3 cut(s) 78, 416, 668
Bst4CI ACNGT 5 cut(s) 35, 188, 390, 433, 523
BstDEI CTNAG 3 cut(s) 209, 615, 691
BstEII GGTNACC 1 cut(s) 589
BstF5I GGATG 5 cut(s) 73, 90, 157, 370, 644
BstFNI CGCG 1 cut(s) 373
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 4 cut(s) 205, 322, 505, 748
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 4 cut(s) 202, 319, 502, 745
BstMWI GCNNNNNNNGC 1 cut(s) 703
BstNI CCWGG 3 cut(s) 78, 416, 668
BstPI GGTNACC 1 cut(s) 589
BstSCI CCNGG 3 cut(s) 76, 414, 666
BstSLI GKGCMC 1 cut(s) 652
BstUI CGCG 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 339, 586
BstX2I RGATCY 1 cut(s) 745
BstXI CCANNNNNNTGG 1 cut(s) 537
BstYI RGATCY 1 cut(s) 745
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 1 cut(s) 81
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 5 cut(s) 73, 90, 157, 370, 644
BtsIMutI CAGTG 2 cut(s) 193, 528
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 1 cut(s) 375
Csp6I GTAC 5 cut(s) 22, 333, 434, 509, 517
CviAII CATG 1 cut(s) 402
CviJI RGCY 8 cut(s) 81, 208, 298, 338, 599, 656, 697, 724
CviKI_1 RGCY 8 cut(s) 81, 208, 298, 338, 599, 656, 697, 724
CviQI GTAC 5 cut(s) 22, 333, 434, 509, 517
DdeI CTNAG 3 cut(s) 209, 615, 691
DpnI GATC 4 cut(s) 204, 321, 504, 747
DpnII GATC 4 cut(s) 202, 319, 502, 745
Ecl136II GAGCTC 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 605
Eco24I GRGCYC 1 cut(s) 699
Eco31I GGTCTC 1 cut(s) 611
Eco53kI GAGCTC 1 cut(s) 697
Eco91I GGTNACC 1 cut(s) 589
EcoICRI GAGCTC 1 cut(s) 697
EcoO65I GGTNACC 1 cut(s) 589
EcoRII CCWGG 3 cut(s) 76, 414, 666
EcoT14I CCWWGG 1 cut(s) 605
EcoT38I GRGCYC 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 605
FaeI CATG 1 cut(s) 405
FaiI YATR 4 cut(s) 148, 403, 731, 760
FaqI GGGAC 1 cut(s) 189
FatI CATG 1 cut(s) 401
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 353, 600
FokI GGATG 5 cut(s) 60, 77, 164, 377, 651
FriOI GRGCYC 1 cut(s) 699
Fsp4HI GCNGC 2 cut(s) 353, 600
GlaI GCGC 1 cut(s) 374
GluI GCNGC 2 cut(s) 353, 600
GsuI CTGGAG 3 cut(s) 47, 125, 458
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 94
HhaI GCGC 1 cut(s) 375
Hin1II CATG 1 cut(s) 405
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 2 cut(s) 31, 43
HindII GTYRAC 2 cut(s) 31, 43
HinfI GANTC 1 cut(s) 611
HpaII CCGG 1 cut(s) 94
HphI GGTGA 2 cut(s) 567, 601
Hpy166II GTNNAC 4 cut(s) 31, 43, 519, 650
Hpy188I TCNGA 3 cut(s) 384, 616, 694
Hpy188III TCNNGA 3 cut(s) 104, 200, 749
Hpy8I GTNNAC 4 cut(s) 31, 43, 519, 650
Hpy99I CGWCG 2 cut(s) 44, 173
HpyAV CCTTC 2 cut(s) 172, 386
HpyCH4III ACNGT 5 cut(s) 35, 188, 390, 433, 523
HpyCH4IV ACGT 3 cut(s) 20, 39, 245
HpyCH4V TGCA 5 cut(s) 123, 395, 548, 642, 650
HpyF10VI GCNNNNNNNGC 1 cut(s) 703
HpyF3I CTNAG 3 cut(s) 209, 615, 691
HpySE526I ACGT 3 cut(s) 20, 39, 245
Hsp92II CATG 1 cut(s) 405
HspAI GCGC 1 cut(s) 373
KpnI GGTACC 1 cut(s) 512
Kzo9I GATC 4 cut(s) 202, 319, 502, 745
LmnI GCTCC 4 cut(s) 303, 482, 607, 721
Lsp1109I GCAGC 2 cut(s) 339, 586
LweI GCATC 1 cut(s) 629
MaeII ACGT 3 cut(s) 20, 39, 245
MaeIII GTNAC 3 cut(s) 16, 35, 589
MalI GATC 4 cut(s) 204, 321, 504, 747
MboI GATC 4 cut(s) 202, 319, 502, 745
MboII GAAGA 1 cut(s) 464
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 2 cut(s) 652, 699
MluCI AATT 2 cut(s) 118, 487
MseI TTAA 2 cut(s) 260, 702
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 3 cut(s) 78, 416, 668
MvaI CCWGG 3 cut(s) 78, 416, 668
MvnI CGCG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 703
NdeII GATC 4 cut(s) 202, 319, 502, 745
NlaIII CATG 1 cut(s) 405
NlaIV GGNNCC 2 cut(s) 510, 723
NmuCI GTSAC 3 cut(s) 16, 35, 589
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 45
PfeI GAWTC 1 cut(s) 611
PfoI TCCNGGA 1 cut(s) 666
PkrI GCNGC 2 cut(s) 354, 601
PsiI TTATAA 1 cut(s) 731
Psp124BI GAGCTC 1 cut(s) 699
Psp1406I AACGTT 1 cut(s) 245
Psp6I CCWGG 3 cut(s) 76, 414, 666
PspEI GGTNACC 1 cut(s) 589
PspGI CCWGG 3 cut(s) 76, 414, 666
PspN4I GGNNCC 2 cut(s) 510, 723
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 1 cut(s) 745
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 5 cut(s) 23, 334, 435, 510, 518
RsaNI GTAC 5 cut(s) 22, 333, 434, 509, 517
SacI GAGCTC 1 cut(s) 699
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 260, 702
SatI GCNGC 2 cut(s) 353, 600
Sau3AI GATC 4 cut(s) 202, 319, 502, 745
ScrFI CCNGG 3 cut(s) 78, 416, 668
SduI GDGCHC 2 cut(s) 652, 699
SfaNI GCATC 1 cut(s) 629
Sse9I AATT 2 cut(s) 118, 487
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 3 cut(s) 76, 414, 666
StyI CCWWGG 1 cut(s) 605
TaaI ACNGT 5 cut(s) 35, 188, 390, 433, 523
TaiI ACGT 3 cut(s) 23, 42, 248
TaqI TCGA 4 cut(s) 42, 171, 199, 675
TasI AATT 2 cut(s) 118, 487
TatI WGTACW 2 cut(s) 332, 516
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 2 cut(s) 260, 702
Tru9I TTAA 2 cut(s) 260, 702
TscAI CASTG 2 cut(s) 193, 528
TseFI GTSAC 3 cut(s) 16, 35, 589
TseI GCWGC 2 cut(s) 352, 599
Tsp45I GTSAC 3 cut(s) 16, 35, 589
TspDTI ATGAA 2 cut(s) 368, 481
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 2 cut(s) 193, 528
VneI GTGCAC 1 cut(s) 648
XapI RAATTY 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.