Rmu_ssc0000196.1_g000001

Equilibrative nucleotide transporter 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000196.1
OG0008216
Physical Location & Seq
Reverse (-)
3393 .. 6975
3583 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1164 bp
ctggagggcgccgaggcatttggtgcagccagcgtaggaagagttgcggcagttcttttcgagattcttgaccgcggcggttggggtggcgttgtggaacccgtagacgttgaacgccgccgtacagctgagggagctgatctggtggagcctgatcccaagaagcagagtatggcgtcacacgtggcgttcgactgtgggatccggatgtttcggctgaggagcgaggtctggagagagttcacgcacttctgcgcgtcgtccggcatcatcggaaggtcgccccaggcggaagggtcaggagcggaggagatttccagagctgacctcacggctctgcgcaatacattcatgaattctttccttgctggcttggctgcatcaggggccctaacctctggactgaggctacttacaaaggcaatatttgagaattcccagaatggtctgcgcaagggagccattatgttcttttccatctctacattctttgagctgctatgtgtttttctgtacgctgttgtctttccgaagctaccaattgtgaagttctaccgctccaaggcagcatcagaaggaccaaaaactgtttcggctgaccttgctgctggtggcatccagacattaccggaaggagatgcagaggatccgactaagatgcagcggctggggaacaaacaattgttagctcaaaacgttgattacgcaattgatatgtttctaatctatgtgctgaccttgtcaattttccccggattcctatcagaagatacgggatctcacagtttgggtacatggtatccactggttttgattgcaatgtacaatgtgtgggatctcatagggagatacgttccatgcttagattgcctcaagttagaatcacgtaaatggctgatggttgtaattgttgctcgtttcttacttgttcctgcgttctatttcactgccaagtacggagaccaaggctggatgatcatgcttacatccttcttgggtttaacccatggttacttaactgtttgtgtgctcactagagcacctaaaggctacaagggaccggaacaaaatgctttgggaaatctactggtagtgttcttattattaggtatatttgcaggagtaacactcgactggttgtggcttataggcaagggctggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

387

Amino Acids

42.49

Weight (kDa)

7.06

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 113 - 381 2.3e-31 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 341, 452
AccB1I GGYRCC 1 cut(s) 8
AccBSI CCGCTC 2 cut(s) 305, 558
AccI GTMKAC 1 cut(s) 105
AccII CGCG 2 cut(s) 75, 257
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 9 cut(s) 47, 73, 75, 78, 118, 290, 305, 556, 664
AclI AACGTT 1 cut(s) 696
AclWI GGATC 7 cut(s) 149, 196, 209, 641, 654, 784, 843
AcsI RAATTY 2 cut(s) 355, 433
AcvI CACGTG 1 cut(s) 184
AcyI GRCGYC 2 cut(s) 9, 176
AfaI GTAC 5 cut(s) 124, 515, 793, 824, 956
AfiI CCNNNNNNNGG 1 cut(s) 562
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 574, 606
AluBI AGCT 6 cut(s) 128, 137, 323, 496, 535, 689
AluI AGCT 6 cut(s) 128, 137, 323, 496, 535, 689
Alw21I GWGCWC 2 cut(s) 1032, 1042
Alw26I GTCTC 1 cut(s) 954
AlwI GGATC 7 cut(s) 149, 196, 209, 641, 654, 784, 843
AlwNI CAGNNNCTG 1 cut(s) 667
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 1 cut(s) 387
ApaI GGGCCC 1 cut(s) 391
ApeKI GCWGC 6 cut(s) 26, 377, 496, 566, 605, 661
ApoI RAATTY 2 cut(s) 355, 433
Asp700I GAANNNNTTC 1 cut(s) 359
AspLEI GCGC 4 cut(s) 11, 257, 342, 453
AspS9I GGNCC 4 cut(s) 387, 388, 578, 1058
AsuC2I CCSGG 1 cut(s) 753
AvaII GGWCC 2 cut(s) 578, 1058
BaeGI GKGCMC 1 cut(s) 391
BamHI GGATCC 2 cut(s) 201, 646
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 391
BbrPI CACGTG 1 cut(s) 184
Bbv12I GWGCWC 2 cut(s) 1032, 1042
BbvCI CCTCAGC 2 cut(s) 129, 218
BbvI GCAGC 6 cut(s) 38, 364, 483, 578, 592, 673
BccI CCATC 2 cut(s) 485, 892
BceAI ACGGC 2 cut(s) 105, 348
BcgI CGANNNNNNTGC 2 cut(s) 640, 674
BciT130I CCWGG 1 cut(s) 287
BciVI GTATCC 1 cut(s) 810
BclI TGATCA 1 cut(s) 975
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 954
BfaI CTAG 1 cut(s) 1035
BfoI RGCGCY 1 cut(s) 12
BfuI GTATCC 1 cut(s) 810
Bme1390I CCNGG 2 cut(s) 287, 753
Bme18I GGWCC 2 cut(s) 578, 1058
BmgT120I GGNCC 4 cut(s) 387, 388, 578, 1058
BmiI GGNNCC 9 cut(s) 10, 99, 150, 203, 388, 389, 460, 648, 1059
BmrFI CCNGG 2 cut(s) 287, 753
BmsI GCATC 6 cut(s) 276, 389, 578, 624, 628, 648
BplI GAGNNNNNCTC 4 cut(s) 312, 344, 1113, 1145
BpmI CTGGAG 2 cut(s) 23, 253
Bpu10I CCTNAGC 2 cut(s) 129, 218
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 753
BsaAI YACGTR 2 cut(s) 184, 887
BsaBI GATNNNNATC 1 cut(s) 760
BsaHI GRCGYC 2 cut(s) 9, 176
BsaI GGTCTC 1 cut(s) 954
BsaJI CCNNGG 7 cut(s) 12, 73, 285, 561, 751, 964, 1006
BsaWI WCCGGW 3 cut(s) 204, 628, 1060
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse1I ACTGG 3 cut(s) 810, 1092, 1139
Bse3DI GCAATG 1 cut(s) 825
Bse8I GATNNNNATC 1 cut(s) 760
BseAI TCCGGA 1 cut(s) 204
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 7 cut(s) 12, 73, 285, 561, 751, 964, 1006
BseGI GGATG 4 cut(s) 213, 615, 978, 986
BseJI GATNNNNATC 1 cut(s) 760
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 3 cut(s) 120, 209, 395
BseNI ACTGG 3 cut(s) 810, 1092, 1139
BseRI GAGGAG 2 cut(s) 235, 323
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 6 cut(s) 38, 364, 483, 578, 592, 673
BseYI CCCAGC 1 cut(s) 667
BsgI GTGCAG 1 cut(s) 45
Bsh1236I CGCG 2 cut(s) 75, 257
BshFI GGCC 1 cut(s) 389
BshNI GGYRCC 1 cut(s) 8
BsiHKAI GWGCWC 2 cut(s) 1032, 1042
BsiSI CCGG 5 cut(s) 205, 264, 629, 753, 1061
BslFI GGGAC 1 cut(s) 1071
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 1 cut(s) 954
BsmFI GGGAC 1 cut(s) 1071
BsnI GGCC 1 cut(s) 389
Bso31I GGTCTC 1 cut(s) 954
Bsp120I GGGCCC 1 cut(s) 387
Bsp1286I GDGCHC 3 cut(s) 391, 1032, 1042
Bsp13I TCCGGA 1 cut(s) 204
Bsp1407I TGTACA 1 cut(s) 822
Bsp143I GATC 7 cut(s) 139, 154, 201, 646, 776, 835, 975
Bsp19I CCATGG 1 cut(s) 1006
BspACI CCGC 9 cut(s) 47, 73, 75, 78, 118, 290, 305, 556, 664
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 3 cut(s) 121, 210, 396
BspEI TCCGGA 1 cut(s) 204
BspFNI CGCG 2 cut(s) 75, 257
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 9 cut(s) 10, 99, 150, 203, 388, 389, 460, 648, 1059
BspPI GGATC 7 cut(s) 149, 196, 209, 641, 654, 784, 843
BspT107I GGYRCC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 954
BsrBI CCGCTC 2 cut(s) 305, 558
BsrDI GCAATG 1 cut(s) 825
BsrGI TGTACA 1 cut(s) 822
BsrI ACTGG 3 cut(s) 810, 1092, 1139
BssECI CCNNGG 7 cut(s) 12, 73, 285, 561, 751, 964, 1006
BssMI GATC 7 cut(s) 139, 154, 201, 646, 776, 835, 975
BssNI GRCGYC 2 cut(s) 9, 176
BssT1I CCWWGG 3 cut(s) 561, 964, 1006
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 4 cut(s) 197, 589, 785, 1021
Bst6I CTCTTC 1 cut(s) 34
BstACI GRCGYC 2 cut(s) 9, 176
BstAPI GCANNNNNTGC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 822
BstBAI YACGTR 2 cut(s) 184, 887
BstC8I GCNNGC 2 cut(s) 31, 370
BstDEI CTNAG 5 cut(s) 129, 218, 404, 654, 862
BstDSI CCRYGG 2 cut(s) 73, 1006
BstF5I GGATG 4 cut(s) 213, 615, 978, 986
BstFNI CGCG 2 cut(s) 75, 257
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 4 cut(s) 11, 257, 342, 453
BstKTI GATC 7 cut(s) 142, 157, 204, 649, 779, 838, 978
BstMAI GTCTC 1 cut(s) 954
BstMBI GATC 7 cut(s) 139, 154, 201, 646, 776, 835, 975
BstMWI GCNNNNNNNGC 6 cut(s) 23, 134, 374, 386, 602, 867
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 285, 751
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 2 cut(s) 75, 257
BstV1I GCAGC 6 cut(s) 38, 364, 483, 578, 592, 673
BstX2I RGATCY 4 cut(s) 201, 646, 776, 835
BstYI RGATCY 4 cut(s) 201, 646, 776, 835
BsuI GTATCC 1 cut(s) 810
BsuRI GGCC 1 cut(s) 389
BtgI CCRYGG 2 cut(s) 73, 1006
BtsCI GGATG 4 cut(s) 213, 615, 978, 986
BtsI GCAGTG 1 cut(s) 945
BtsIMutI CAGTG 2 cut(s) 803, 945
Cac8I GCNNGC 2 cut(s) 31, 370
CaiI CAGNNNCTG 1 cut(s) 667
CciI TCATGA 1 cut(s) 351
CfoI GCGC 4 cut(s) 11, 257, 342, 453
Cfr13I GGNCC 4 cut(s) 387, 388, 578, 1058
Cfr42I CCGCGG 1 cut(s) 76
CseI GACGC 2 cut(s) 165, 246
Csp6I GTAC 5 cut(s) 123, 514, 792, 823, 955
CspCI CAANNNNNGTGG 2 cut(s) 792, 827
CviAII CATG 5 cut(s) 352, 795, 858, 979, 1007
CviQI GTAC 5 cut(s) 123, 514, 792, 823, 955
DdeI CTNAG 5 cut(s) 129, 218, 404, 654, 862
DinI GGCGCC 1 cut(s) 10
DpnI GATC 7 cut(s) 141, 156, 203, 648, 778, 837, 977
DpnII GATC 7 cut(s) 139, 154, 201, 646, 776, 835, 975
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 3 cut(s) 561, 964, 1006
Eco24I GRGCYC 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 954
Eco47I GGWCC 2 cut(s) 578, 1058
Eco72I CACGTG 1 cut(s) 184
EcoO109I RGGNCCY 2 cut(s) 387, 388
EcoRI GAATTC 2 cut(s) 355, 433
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 3 cut(s) 561, 964, 1006
EcoT38I GRGCYC 1 cut(s) 391
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
ErhI CCWWGG 3 cut(s) 561, 964, 1006
FaeI CATG 5 cut(s) 355, 798, 861, 982, 1010
FaqI GGGAC 1 cut(s) 1071
FatI CATG 5 cut(s) 351, 794, 857, 978, 1006
FbaI TGATCA 1 cut(s) 975
FblI GTMKAC 1 cut(s) 105
FokI GGATG 4 cut(s) 220, 602, 973, 985
FriOI GRGCYC 1 cut(s) 391
FspBI CTAG 1 cut(s) 1035
FspI TGCGCA 2 cut(s) 341, 452
GlaI GCGC 4 cut(s) 10, 256, 341, 452
GsaI CCCAGC 1 cut(s) 671
GsuI CTGGAG 2 cut(s) 23, 253
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 1 cut(s) 389
HapII CCGG 5 cut(s) 205, 264, 629, 753, 1061
HgaI GACGC 2 cut(s) 165, 246
HhaI GCGC 4 cut(s) 11, 257, 342, 453
Hin1I GRCGYC 2 cut(s) 9, 176
Hin1II CATG 5 cut(s) 355, 798, 861, 982, 1010
Hin6I GCGC 4 cut(s) 9, 255, 340, 451
HinP1I GCGC 4 cut(s) 9, 255, 340, 451
HinfI GANTC 3 cut(s) 64, 756, 881
HpaII CCGG 5 cut(s) 205, 264, 629, 753, 1061
Hpy166II GTNNAC 2 cut(s) 106, 243
Hpy188I TCNGA 5 cut(s) 275, 531, 574, 651, 766
Hpy188III TCNNGA 9 cut(s) 61, 68, 205, 232, 300, 318, 352, 399, 619
Hpy8I GTNNAC 2 cut(s) 106, 243
Hpy99I CGWCG 1 cut(s) 262
HpyAV CCTTC 5 cut(s) 270, 287, 569, 626, 1000
HpyCH4III ACNGT 4 cut(s) 197, 589, 785, 1021
HpyCH4IV ACGT 5 cut(s) 108, 183, 696, 852, 886
HpyCH4V TGCA 6 cut(s) 26, 380, 641, 661, 818, 1118
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 134, 374, 386, 602, 867
HpyF3I CTNAG 5 cut(s) 129, 218, 404, 654, 862
HpySE526I ACGT 5 cut(s) 108, 183, 696, 852, 886
Hsp92I GRCGYC 2 cut(s) 9, 176
Hsp92II CATG 5 cut(s) 355, 798, 861, 982, 1010
HspAI GCGC 4 cut(s) 9, 255, 340, 451
KasI GGCGCC 1 cut(s) 8
Kpn2I TCCGGA 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 975
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 7 cut(s) 139, 154, 201, 646, 776, 835, 975
LmnI GCTCC 6 cut(s) 134, 148, 222, 302, 458, 563
Lsp1109I GCAGC 6 cut(s) 38, 364, 483, 578, 592, 673
LweI GCATC 6 cut(s) 276, 389, 578, 624, 628, 648
MaeI CTAG 1 cut(s) 1035
MaeII ACGT 5 cut(s) 108, 183, 696, 852, 886
MaeIII GTNAC 3 cut(s) 177, 1010, 1123
MalI GATC 7 cut(s) 141, 156, 203, 648, 778, 837, 977
MbiI CCGCTC 2 cut(s) 305, 558
MboI GATC 7 cut(s) 139, 154, 201, 646, 776, 835, 975
MboII GAAGA 2 cut(s) 51, 779
MfeI CAATTG 3 cut(s) 540, 680, 708
MflI RGATCY 4 cut(s) 201, 646, 776, 835
MhlI GDGCHC 3 cut(s) 391, 1032, 1042
MluCI AATT 7 cut(s) 355, 433, 540, 680, 708, 744, 906
Mly113I GGCGCC 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 674
MroI TCCGGA 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 2 cut(s) 1001, 1016
MslI CAYNNNNRTG 1 cut(s) 889
MspA1I CMGCKG 3 cut(s) 75, 128, 664
MspI CCGG 5 cut(s) 205, 264, 629, 753, 1061
MspR9I CCNGG 2 cut(s) 287, 753
MunI CAATTG 3 cut(s) 540, 680, 708
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 2 cut(s) 75, 257
MwoI GCNNNNNNNGC 6 cut(s) 23, 134, 374, 386, 602, 867
NarI GGCGCC 1 cut(s) 9
NciI CCSGG 1 cut(s) 753
NcoI CCATGG 1 cut(s) 1006
NdeII GATC 7 cut(s) 139, 154, 201, 646, 776, 835, 975
NlaIII CATG 5 cut(s) 355, 798, 861, 982, 1010
NlaIV GGNNCC 9 cut(s) 10, 99, 150, 203, 388, 389, 460, 648, 1059
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 177
NsbI TGCGCA 2 cut(s) 341, 452
PagI TCATGA 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 64, 756, 881
PflFI GACNNNGTC 1 cut(s) 739
PluTI GGCGCC 1 cut(s) 12
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
Ppu21I YACGTR 2 cut(s) 184, 887
Psp1406I AACGTT 1 cut(s) 696
Psp6I CCWGG 1 cut(s) 285
PspCI CACGTG 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 667
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 9 cut(s) 10, 99, 150, 203, 388, 389, 460, 648, 1059
PspOMI GGGCCC 1 cut(s) 387
PspPI GGNCC 4 cut(s) 387, 388, 578, 1058
PstNI CAGNNNCTG 1 cut(s) 667
PsuI RGATCY 4 cut(s) 201, 646, 776, 835
PsyI GACNNNGTC 1 cut(s) 739
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 5 cut(s) 124, 515, 793, 824, 956
RsaNI GTAC 5 cut(s) 123, 514, 792, 823, 955
RseI CAYNNNNRTG 1 cut(s) 889
SacII CCGCGG 1 cut(s) 76
SaqAI TTAA 2 cut(s) 1001, 1016
Sau3AI GATC 7 cut(s) 139, 154, 201, 646, 776, 835, 975
Sau96I GGNCC 4 cut(s) 387, 388, 578, 1058
ScrFI CCNGG 2 cut(s) 287, 753
SduI GDGCHC 3 cut(s) 391, 1032, 1042
SfaNI GCATC 6 cut(s) 276, 389, 578, 624, 628, 648
SfoI GGCGCC 1 cut(s) 10
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 2 cut(s) 578, 1058
SmiMI CAYNNNNRTG 1 cut(s) 889
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
Sse9I AATT 7 cut(s) 355, 433, 540, 680, 708, 744, 906
SsiI CCGC 9 cut(s) 47, 73, 75, 78, 118, 290, 305, 556, 664
SspDI GGCGCC 1 cut(s) 8
SspI AATATT 1 cut(s) 426
SspMI CTAG 1 cut(s) 1035
StyD4I CCNGG 2 cut(s) 285, 751
StyI CCWWGG 3 cut(s) 561, 964, 1006
TaaI ACNGT 4 cut(s) 197, 589, 785, 1021
TaiI ACGT 5 cut(s) 111, 186, 699, 855, 889
TaqI TCGA 3 cut(s) 60, 192, 1131
TasI AATT 7 cut(s) 355, 433, 540, 680, 708, 744, 906
TatI WGTACW 1 cut(s) 822
TauI GCSGC 4 cut(s) 50, 78, 120, 667
TfiI GAWTC 3 cut(s) 64, 756, 881
Tru1I TTAA 2 cut(s) 1001, 1016
Tru9I TTAA 2 cut(s) 1001, 1016
TscAI CASTG 2 cut(s) 810, 952
TseFI GTSAC 1 cut(s) 177
TseI GCWGC 6 cut(s) 26, 377, 496, 566, 605, 661
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 2 cut(s) 340, 368
TspGWI ACGGA 1 cut(s) 972
TspRI CASTG 2 cut(s) 810, 952
Tth111I GACNNNGTC 1 cut(s) 739
VpaK11BI GGWCC 2 cut(s) 578, 1058
XapI RAATTY 2 cut(s) 355, 433
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.