Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000237.1

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Reverse (-)

18913 .. 20363

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgtcatctgtccatctaacccatgatttggggactttgagttccattcctgtcctcacaaccacagcacaaaactccaaaccagtcaccaaccctcgggacaacaacgtcttttcaaaaccccagactccgttttgcctaaaccaattcccctgcaagactctcttagtaactccacgtcacccccgcctgacctccaagcctttaactactttggcgccaaactccgtcggactcgccacccccaaattgacactctccaacccggaatacccacaagccatccgacccgcgacccggatccgagccattgacgaggacgagtcggccccggaaacctcggaggagccgtccggcgtggcagctggagccgtggctgtggcggagaagccggctgagccggaggagatctcgaaactgaagaaggttctggtggacgcgttttacgggactgatcttgggctcagcgccaccagcgagacccgggccgagattgtagagcttattacccaattggaggtccaaaacccgactccggctccgaccgaggccttgcctctccttaacgggaaatggattctggcgtacacatcttttgctggtttgtttccgttattgtccagaggaactcttcctttggtgaaggttgatgaggtttcgcagactatcgactcccagaacttcacagttgaaaactctgttcggttttccgggcctttggctacaacttctttcagcaccaatgccacttttgatgtccgaagtcctaagtgtgttcagctcaagtttgaggaaggggtgattggcactccacagctaacagactcgctagtgataccagaagatgttgagtttttgggacagaagatagaccttgcacccttcaagggtttgctcacctctgtccaagacactgcttcctcggttgcaaagtccatctccagccaacccccgtttaagttttcgatctcaagtagcaaggccgaatcgtggttgctaaccacataccttgatcaagagcttcggatttcgaggggagacaatggcagtgtgtttgtgctcatcaaggaaggcagctcccttttgactccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

364

Amino Acids

39.16

Weight (kDa)

5.12

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	139 - 354	1.4e-76	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	28
AccII	CGCG	2 cut(s)	293, 440
AciI	CCGC	3 cut(s)	187, 291, 383
AclWI	GGATC	2 cut(s)	295, 308
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	7 cut(s)	28, 96, 297, 517, 535, 887, 990
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	3 cut(s)	117, 692, 886
AjiI	CACGTC	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AloI	GAACNNNNNNTCC	2 cut(s)	25, 57
AluBI	AGCT	6 cut(s)	365, 502, 781, 817, 1021, 1077
AluI	AGCT	6 cut(s)	365, 502, 781, 817, 1021, 1077
Alw21I	GWGCWC	1 cut(s)	1062
Alw26I	GTCTC	2 cut(s)	473, 1032
AlwI	GGATC	2 cut(s)	295, 308
Ama87I	CYCGRG	2 cut(s)	96, 483
AoxI	GGCC	5 cut(s)	327, 486, 549, 713, 981
ApeKI	GCWGC	2 cut(s)	362, 1074
AspLEI	GCGC	2 cut(s)	220, 470
AspS9I	GGNCC	4 cut(s)	328, 486, 520, 713
AsuC2I	CCSGG	6 cut(s)	266, 298, 332, 484, 485, 712
AsuHPI	GGTGA	5 cut(s)	79, 173, 652, 811, 889
AvaI	CYCGRG	2 cut(s)	96, 483
AvaII	GGWCC	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	1062
BbvI	GCAGC	2 cut(s)	374, 1086
BccI	CCATC	3 cut(s)	21, 290, 944
BceAI	ACGGC	2 cut(s)	334, 356
BclI	TGATCA	1 cut(s)	1012
BcnI	CCSGG	6 cut(s)	266, 298, 332, 484, 485, 712
BcoDI	GTCTC	2 cut(s)	473, 1032
BfaI	CTAG	1 cut(s)	830
BfoI	RGCGCY	2 cut(s)	221, 471
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	2 cut(s)	363, 1075
BlpI	GCTNAGC	2 cut(s)	396, 464
BlsI	GCNGC	2 cut(s)	364, 1076
Bme1390I	CCNGG	6 cut(s)	266, 298, 332, 484, 485, 712
Bme18I	GGWCC	1 cut(s)	520
BmeT110I	CYCGRG	2 cut(s)	96, 483
BmgBI	CACGTC	1 cut(s)	179
BmgT120I	GGNCC	4 cut(s)	328, 486, 520, 713
BmiI	GGNNCC	6 cut(s)	219, 302, 330, 348, 370, 540
BmrFI	CCNGG	6 cut(s)	266, 298, 332, 484, 485, 712
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpmI	CTGGAG	2 cut(s)	387, 925
Bpu1102I	GCTNAGC	2 cut(s)	396, 464
BpuEI	CTTGAG	2 cut(s)	767, 955
BpuMI	CCSGG	6 cut(s)	266, 298, 332, 484, 485, 712
BsaHI	GRCGYC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	7 cut(s)	95, 330, 339, 372, 483, 546, 921
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 523, 553
Bsc4I	CCNNNNNNNGG	7 cut(s)	28, 96, 297, 517, 535, 887, 990
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	83
BseDI	CCNNGG	7 cut(s)	95, 330, 339, 372, 483, 546, 921
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	7 cut(s)	28, 96, 297, 517, 535, 887, 990
BseMII	CTCAG	2 cut(s)	387, 478
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	2 cut(s)	359, 419
BseXI	GCAGC	2 cut(s)	374, 1086
Bsh1236I	CGCG	2 cut(s)	293, 440
Bsh1285I	CGRYCG	1 cut(s)	546
BshFI	GGCC	5 cut(s)	329, 488, 551, 715, 983
BshNI	GGYRCC	1 cut(s)	217
BsiEI	CGRYCG	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	1062
BsiHKCI	CYCGRG	2 cut(s)	96, 483
BsiSI	CCGG	9 cut(s)	266, 298, 332, 354, 392, 401, 484, 536, 711
BslFI	GGGAC	4 cut(s)	46, 113, 463, 873
BslI	CCNNNNNNNGG	7 cut(s)	28, 96, 297, 517, 535, 887, 990
BsmAI	GTCTC	2 cut(s)	473, 1032
BsmFI	GGGAC	4 cut(s)	46, 113, 463, 873
BsnI	GGCC	5 cut(s)	329, 488, 551, 715, 983
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	2 cut(s)	96, 483
Bsp1286I	GDGCHC	2 cut(s)	465, 1062
Bsp143I	GATC	5 cut(s)	300, 408, 454, 966, 1012
Bsp1720I	GCTNAGC	2 cut(s)	396, 464
BspACI	CCGC	3 cut(s)	187, 291, 383
BspANI	GGCC	5 cut(s)	329, 488, 551, 715, 983
BspCNI	CTCAG	2 cut(s)	388, 477
BspFNI	CGCG	2 cut(s)	293, 440
BspLI	GGNNCC	6 cut(s)	219, 302, 330, 348, 370, 540
BspPI	GGATC	2 cut(s)	295, 308
BspT107I	GGYRCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	473
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	7 cut(s)	95, 330, 339, 372, 483, 546, 921
BssMI	GATC	5 cut(s)	300, 408, 454, 966, 1012
BssNI	GRCGYC	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	1 cut(s)	636
BstACI	GRCGYC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	4 cut(s)	166, 396, 464, 768
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	2 cut(s)	293, 440
BstH2I	RGCGCY	2 cut(s)	221, 471
BstHHI	GCGC	2 cut(s)	220, 470
BstKTI	GATC	5 cut(s)	303, 411, 457, 969, 1015
BstMAI	GTCTC	2 cut(s)	473, 1032
BstMBI	GATC	5 cut(s)	300, 408, 454, 966, 1012
BstMCI	CGRYCG	1 cut(s)	546
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 397, 474
BstSCI	CCNGG	6 cut(s)	264, 296, 330, 482, 483, 710
BstUI	CGCG	2 cut(s)	293, 440
BstV1I	GCAGC	2 cut(s)	374, 1086
BstX2I	RGATCY	2 cut(s)	300, 408
BstYI	RGATCY	2 cut(s)	300, 408
BsuRI	GGCC	5 cut(s)	329, 488, 551, 715, 983
BtgI	CCRYGG	1 cut(s)	372
BtrI	CACGTC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	2 cut(s)	912, 1054
BtsIMutI	CAGTG	2 cut(s)	912, 1054
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	2 cut(s)	220, 470
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	4 cut(s)	328, 486, 520, 713
Cfr9I	CCCGGG	1 cut(s)	483
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	586
CspCI	CAANNNNNGTGG	2 cut(s)	991, 1026
CviAII	CATG	1 cut(s)	23
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	4 cut(s)	166, 396, 464, 768
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	5 cut(s)	302, 410, 456, 968, 1014
DpnII	GATC	5 cut(s)	300, 408, 454, 966, 1012
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
EciI	GGCGGA	1 cut(s)	398
Eco147I	AGGCCT	1 cut(s)	551
Eco24I	GRGCYC	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	440
Eco88I	CYCGRG	2 cut(s)	96, 483
EcoT38I	GRGCYC	1 cut(s)	465
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
FaeI	CATG	1 cut(s)	26
FaiI	YATR	2 cut(s)	24, 1006
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	4 cut(s)	46, 113, 463, 873
FatI	CATG	1 cut(s)	22
FauI	CCCGC	2 cut(s)	194, 298
FbaI	TGATCA	1 cut(s)	1012
Fnu4HI	GCNGC	2 cut(s)	363, 1075
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	2 cut(s)	363, 1075
FspBI	CTAG	1 cut(s)	830
GlaI	GCGC	2 cut(s)	219, 469
GluI	GCNGC	2 cut(s)	363, 1075
GsuI	CTGGAG	2 cut(s)	387, 925
HaeII	RGCGCY	2 cut(s)	221, 471
HaeIII	GGCC	5 cut(s)	329, 488, 551, 715, 983
HapII	CCGG	9 cut(s)	266, 298, 332, 354, 392, 401, 484, 536, 711
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	2 cut(s)	220, 470
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	2 cut(s)	218, 468
HinP1I	GCGC	2 cut(s)	218, 468
HpaII	CCGG	9 cut(s)	266, 298, 332, 354, 392, 401, 484, 536, 711
HphI	GGTGA	5 cut(s)	79, 173, 652, 811, 889
Hpy166II	GTNNAC	2 cut(s)	436, 588
Hpy188I	TCNGA	7 cut(s)	233, 287, 305, 343, 543, 761, 1026
Hpy188III	TCNNGA	4 cut(s)	98, 412, 621, 1016
Hpy8I	GTNNAC	2 cut(s)	436, 588
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	5 cut(s)	418, 637, 788, 892, 1064
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	2 cut(s)	108, 178
HpyCH4V	TGCA	3 cut(s)	156, 878, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 397, 474
HpyF3I	CTNAG	4 cut(s)	166, 396, 464, 768
HpySE526I	ACGT	2 cut(s)	108, 178
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	2 cut(s)	218, 468
KasI	GGCGCC	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	1012
Kzo9I	GATC	5 cut(s)	300, 408, 454, 966, 1012
LmnI	GCTCC	4 cut(s)	346, 368, 544, 1082
Lsp1109I	GCAGC	2 cut(s)	374, 1086
MaeI	CTAG	1 cut(s)	830
MaeII	ACGT	2 cut(s)	108, 178
MaeIII	GTNAC	3 cut(s)	85, 169, 179
MalI	GATC	5 cut(s)	302, 410, 456, 968, 1014
MboI	GATC	5 cut(s)	300, 408, 454, 966, 1012
MboII	GAAGA	4 cut(s)	433, 623, 854, 877
MfeI	CAATTG	1 cut(s)	512
MflI	RGATCY	2 cut(s)	300, 408
MhlI	GDGCHC	2 cut(s)	465, 1062
MluCI	AATT	3 cut(s)	146, 248, 512
MluI	ACGCGT	1 cut(s)	438
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	8 cut(s)	121, 154, 228, 332, 526, 665, 818, 1081
MmeI	TCCRAC	4 cut(s)	211, 285, 310, 566
MroNI	GCCGGC	1 cut(s)	391
MseI	TTAA	3 cut(s)	206, 564, 957
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	9 cut(s)	266, 298, 332, 354, 392, 401, 484, 536, 711
MspR9I	CCNGG	6 cut(s)	266, 298, 332, 484, 485, 712
MunI	CAATTG	1 cut(s)	512
MvnI	CGCG	2 cut(s)	293, 440
MwoI	GCNNNNNNNGC	3 cut(s)	368, 397, 474
NaeI	GCCGGC	1 cut(s)	393
NarI	GGCGCC	1 cut(s)	218
NciI	CCSGG	6 cut(s)	266, 298, 332, 484, 485, 712
NdeII	GATC	5 cut(s)	300, 408, 454, 966, 1012
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	6 cut(s)	219, 302, 330, 348, 370, 540
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	2 cut(s)	85, 179
PceI	AGGCCT	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PdiI	GCCGGC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	577, 986
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	364, 1076
PleI	GAGTC	8 cut(s)	121, 154, 228, 331, 526, 665, 818, 1081
PluTI	GGCGCC	1 cut(s)	221
PpsI	GAGTC	8 cut(s)	121, 154, 228, 331, 526, 665, 818, 1081
PspN4I	GGNNCC	6 cut(s)	219, 302, 330, 348, 370, 540
PspPI	GGNCC	4 cut(s)	328, 486, 520, 713
PsuI	RGATCY	2 cut(s)	300, 408
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SaqAI	TTAA	3 cut(s)	206, 564, 957
SatI	GCNGC	2 cut(s)	363, 1075
Sau3AI	GATC	5 cut(s)	300, 408, 454, 966, 1012
Sau96I	GGNCC	4 cut(s)	328, 486, 520, 713
SchI	GAGTC	8 cut(s)	121, 154, 228, 332, 526, 665, 818, 1081
ScrFI	CCNGG	6 cut(s)	266, 298, 332, 484, 485, 712
SduI	GDGCHC	2 cut(s)	465, 1062
SfoI	GGCGCC	1 cut(s)	219
SinI	GGWCC	1 cut(s)	520
SmaI	CCCGGG	1 cut(s)	485
SmlI	CTYRAG	2 cut(s)	782, 970
SmoI	CTYRAG	2 cut(s)	782, 970
Sse9I	AATT	3 cut(s)	146, 248, 512
SseBI	AGGCCT	1 cut(s)	551
SsiI	CCGC	3 cut(s)	187, 291, 383
SspDI	GGCGCC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	830
StuI	AGGCCT	1 cut(s)	551
StyD4I	CCNGG	6 cut(s)	264, 296, 330, 482, 483, 710
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	2 cut(s)	111, 181
TaqI	TCGA	4 cut(s)	413, 669, 965, 1031
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	3 cut(s)	146, 248, 512
TfiI	GAWTC	2 cut(s)	577, 986
Tru1I	TTAA	3 cut(s)	206, 564, 957
Tru9I	TTAA	3 cut(s)	206, 564, 957
TscAI	CASTG	2 cut(s)	919, 1054
TseFI	GTSAC	2 cut(s)	85, 179
TseI	GCWGC	2 cut(s)	362, 1074
Tsp45I	GTSAC	2 cut(s)	85, 179
TspGWI	ACGGA	3 cut(s)	120, 217, 600
TspMI	CCCGGG	1 cut(s)	483
TspRI	CASTG	2 cut(s)	919, 1054
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	520
XmaI	CCCGGG	1 cut(s)	483
XspI	CTAG	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.