Rmu_ssc0000269.1_g000007

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000269.1
OG0004735
Physical Location & Seq
Reverse (-)
11090 .. 14952
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3135 bp
atgaccctgtacatgcccttattcaggtcatgcacaaccctacgaacactgacccaactccacgcccatctcctagtctcaggtctccacagagacccacaagcctccaccaagctcatcgagtcctactcccaactgggctccctccactcctcaacccagctctttcaaaccttccctaaccaagaccctttcatgtggggcgtcctcatcaaatgcttcatgtggaaccgccgcttccacgaggccatctcactctaccaagaaatgctgcaatgctcggtgggcatgagtaggttcatattcccttctgttttgagagcctgttcgggctgtggtgagctcagtgtgggtaggaaggtccatgggaggatagtgaaatgcgggttcgactcggatgctgtggtcgagaccgcattgctgggtttgtatggggagctggggcgtttggatgatgcaaggaaggtgtttgttgaaatgcatgtgagagacgccgtgtcgtggagttcggttatcttgtgttgcgtggagaatggagaggtgagtgaagggttggagatgttccgggggatggtgatggaaggaggtgttgtaccggattccgtcacaatgctcagtgtagctgaggcttgtgggaagttggggtggcggagaggagctaggtcagtgcatggttatgttgttagaagggagtttacaaaggacgagtctttggatacttctctgattacaatgtacagcaagtgtggcgacttgcagagtccggaaaggatttttcgtaatgttgctcatcgccacactgcatcttggaccgcgatgatttcctgctacaatcaagctgcttctttctcacaagcactagatgtttttgttaagatgcaggagtctggagtggagccgaatgctgtgacgttgatgtgcattctaatgtcttgtgttgggttaggcttgctcaaagaagggaagtctgttcatggatttgttattagaaaggctgtagaccctgaccttgattctttggggtcaccattgttagagttatatgctgaaattgggggactaagctattgtcagaaaattcttaatatgattggagtcagaaatgttgttccgtggaatacaattatttcaatttattgtcagaaaggtctgctgagagagtcattgctactctttgtgcagatgcaggcccaaggactaatgccagattcattcagcatgtcaagtgctctcgccgcttgtggaaagatgggtttattagagattgggcatcagatacatggtcatatagtcaaacgaggctatttggatgagtttgtgttgaactcactaattgatatgtactcaaaatgtgggtttgtagattcagcatacataatatttgacgagatgaaacatcctggtatcataacatggaattctatgatctcgggattttctcgtagtggtaactctgtcatggctatcagtcttttcgaccgaatttatctgaaccgtcttgagattgatgaagtcaccattttaagtgttattcaagcttgctccgaattaggttatttagaaaagggaaaatgggttcaccacaagctcataacttatggtgtgaggaaagacctctatattgatacagctctaactgacatgtatgctaagtgtggtgaccttcagtcagctcaaggtgtatttgatacgatggtagaaagaagcgttgtgtcttggagtgtcatgatcgctgggtatggaatacatggcaagatacgtgctgccgtatcactctttagtcaaatgttagaaactggaatcgaaccaaatgaggttacattcatgaatattctttcagcttgtagtcatgcaggtgctgttgaagaagggaggttatattttagatcaatgagggatttcggcattgagcccaatgcagaacattttgcatgtatagttgaccttctaagtcgagccggtgatctgaatggagcctatgatatcattaaatcaataccagtctctgttgatgccagcatatggggcgccctgctcaatggatgtcgaatccaccagaggatggacatgattaaaagcatcgaaaaagaccttttatatattaagacagatgacactggctactacaccttattttctaacatatatgctgaaggagggaactgggaggaatttgggaatgtgagattaatgatgaaaggtattggtctgaggaaggtccctggatacagtgtaattgagattgataagcgagtgtatagattcggagctggagatactcctcttcctcaaatgaaggaggtttacggaaagcatgaggtagagcccaattcagcagttctctcatggtttactcagaccaaagttcaaagttctcagaatgagaagtgtagcataacaatttcattagaccagctaaaggatgctgacattttgccactaaaggacgtgcttatgtcaagtgactcatctcatattcatgcagttgacttatttctggaattccatagtgacctgggcacagaaagtgttgtggatttgatgaatggactcaatgcaaagcttcgagttgtcgatctccaggatttgtctttggggaaagaatttctgcgggatctttgtcagggttccttggcttgccaagtcttcaacttgcggtccattcatatccagaaactcgacatgattggaaactttttgcgactacacacccttaatcttgatttttgtacttcactcggtagtttgcgaagggactgtttttcttgcatgccaaatctgacgcgcctctcaatgtgtgagacaagaatttccaatctcctgaccatgactggtgctctgtcaagacttccttgtttgcttgaactacggttccaaagctgtttatgttgcaaggaaactggatcatgtcctggtttagaagggcaacagaaattgcagactgagactcaagaaaaagatgaaacccttgtaagtgagggtaagaaagcctcgaggaatgtgagtattacattgaagaactttgtaactcatcatccttcacccatatgctttgagaaacattatcgggagtatatcatatcttcgctgcctgacgtctgttgtattcgatttaatgctttgatggtttcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

1044

Amino Acids

116.57

Weight (kDa)

6.22

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 267 - 309 1.3e-06 PPR repeat family
PPR_2 PF13041 367 - 415 2.4e-08 PPR repeat family
PPR_2 PF13041 467 - 515 1.2e-06 PPR repeat family
PPR_2 PF13041 569 - 616 2.5e-11 PPR repeat family
PPR PF01535 571 - 601 7.7e-06 PPR repeat
E_motif PF20431 697 - 747 1.2e-10 E motif
DHU1_N PF20919 768 - 967 2.4e-45 DWD hypersensitive to UV-B 1, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1844
AatII GACGTC 1 cut(s) 3099
AbsI CCTCGAGG 1 cut(s) 2992
Acc36I ACCTGC 1 cut(s) 1844
AccB1I GGYRCC 1 cut(s) 2027
AccB7I CCANNNNNTGG 2 cut(s) 2022, 2062
AccI GTMKAC 1 cut(s) 999
AccII CGCG 2 cut(s) 815, 2785
AccIII TCCGGA 1 cut(s) 763
AciI CCGC 9 cut(s) 232, 235, 384, 414, 649, 813, 1236, 2611, 2656
AclWI GGATC 2 cut(s) 2622, 2911
AcsI RAATTY 7 cut(s) 1077, 1417, 1482, 2171, 2501, 2603, 2808
AcuI CTGAAG 2 cut(s) 1649, 2172
AcyI GRCGYC 4 cut(s) 204, 492, 2028, 3096
AfaI GTAC 5 cut(s) 11, 594, 737, 1343, 2731
AfiI CCNNNNNNNGG 6 cut(s) 24, 501, 571, 2022, 2062, 2419
AflIII ACRYGT 1 cut(s) 1641
AhdI GACNNNNNGTC 2 cut(s) 496, 1666
AjiI CACGTC 1 cut(s) 2449
AjnI CCWGG 5 cut(s) 1399, 2221, 2514, 2580, 2911
AloI GAACNNNNNNTCC 4 cut(s) 1560, 1592, 2856, 2888
Alw21I GWGCWC 3 cut(s) 345, 1231, 2839
Alw26I GTCTC 8 cut(s) 82, 87, 89, 404, 483, 2008, 2795, 2939
AlwI GGATC 2 cut(s) 2622, 2911
AlwNI CAGNNNCTG 2 cut(s) 1859, 2006
Ama87I CYCGRG 2 cut(s) 1429, 2992
Aor13HI TCCGGA 1 cut(s) 763
AoxI GGCC 2 cut(s) 246, 1188
ApeKI GCWGC 4 cut(s) 271, 839, 1763, 3088
ApoI RAATTY 7 cut(s) 1077, 1417, 1482, 2171, 2501, 2603, 2808
ArsI GACNNNNNNTTYG 2 cut(s) 692, 724
AseI ATTAAT 1 cut(s) 2189
AspLEI GCGC 2 cut(s) 2030, 2787
AspS9I GGNCC 5 cut(s) 361, 810, 1189, 2218, 2658
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 9 cut(s) 350, 553, 586, 1017, 1507, 1571, 1670, 1973, 3033
AvaI CYCGRG 2 cut(s) 1429, 2992
AvaII GGWCC 4 cut(s) 361, 810, 2218, 2658
BaeGI GKGCMC 1 cut(s) 2522
BaeI ACNNNNGTAYC 2 cut(s) 1680, 1713
BanI GGYRCC 1 cut(s) 2027
BanII GRGCYC 4 cut(s) 143, 345, 1914, 2328
BarI GAAGNNNNNNTAC 4 cut(s) 679, 711, 2288, 2320
BauI CACGAG 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 2638
Bbv12I GWGCWC 3 cut(s) 345, 1231, 2839
BbvCI CCTCAGC 1 cut(s) 624
BbvI GCAGC 4 cut(s) 258, 826, 1750, 3075
BccI CCATC 8 cut(s) 75, 257, 565, 571, 1243, 1687, 2056, 3118
BceAI ACGGC 2 cut(s) 479, 1751
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 5 cut(s) 1401, 2223, 2516, 2582, 2913
BciVI GTATCC 2 cut(s) 709, 2219
BcnI CCSGG 1 cut(s) 566
BcoDI GTCTC 8 cut(s) 82, 87, 89, 404, 483, 2008, 2795, 2939
BfaI CTAG 4 cut(s) 74, 660, 860, 3133
BfmI CTRYAG 1 cut(s) 996
BfoI RGCGCY 1 cut(s) 2031
BfuAI ACCTGC 1 cut(s) 1844
BfuI GTATCC 2 cut(s) 709, 2219
BisI GCNGC 6 cut(s) 235, 272, 840, 1236, 1764, 3089
BlsI GCNGC 6 cut(s) 236, 273, 841, 1237, 1765, 3090
Bme1390I CCNGG 6 cut(s) 566, 1401, 2223, 2516, 2582, 2913
Bme18I GGWCC 4 cut(s) 361, 810, 2218, 2658
BmeRI GACNNNNNGTC 2 cut(s) 496, 1666
BmeT110I CYCGRG 2 cut(s) 1429, 2992
BmgBI CACGTC 1 cut(s) 2449
BmgT120I GGNCC 5 cut(s) 361, 810, 1189, 2218, 2658
BmiI GGNNCC 8 cut(s) 142, 230, 897, 1975, 2029, 2220, 2629, 2873
BmrFI CCNGG 6 cut(s) 566, 1401, 2223, 2516, 2582, 2913
BmrI ACTGGG 2 cut(s) 146, 2173
BmsI GCATC 9 cut(s) 388, 445, 812, 867, 1173, 1279, 2002, 2088, 2413
BmuI ACTGGG 2 cut(s) 146, 2173
BpiI GAAGAC 1 cut(s) 2638
BplI GAGNNNNNCTC 4 cut(s) 113, 145, 236, 268
BpmI CTGGAG 3 cut(s) 909, 2292, 2564
Bpu10I CCTNAGC 1 cut(s) 624
BpuEI CTTGAG 3 cut(s) 1520, 1659, 2934
BpuMI CCSGG 1 cut(s) 566
BsaAI YACGTR 1 cut(s) 1760
BsaHI GRCGYC 4 cut(s) 204, 492, 2028, 3096
BsaI GGTCTC 3 cut(s) 87, 89, 404
BsaJI CCNNGG 7 cut(s) 364, 565, 1112, 1192, 2221, 2515, 2631
BsaWI WCCGGW 2 cut(s) 595, 763
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 6 cut(s) 24, 501, 571, 2022, 2062, 2419
Bse118I RCCGGY 1 cut(s) 1958
Bse1I ACTGG 7 cut(s) 141, 1801, 2000, 2122, 2168, 2836, 2905
Bse3DI GCAATG 3 cut(s) 281, 416, 1163
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 5 cut(s) 1401, 2223, 2516, 2582, 2913
BseDI CCNNGG 7 cut(s) 364, 565, 1112, 1192, 2221, 2515, 2631
BseGI GGATG 9 cut(s) 403, 457, 576, 1315, 1396, 2048, 2067, 2428, 3034
BseLI CCNNNNNNNGG 6 cut(s) 24, 501, 571, 2022, 2062, 2419
BseMI GCAATG 3 cut(s) 281, 416, 1163
BseMII CTCAG 9 cut(s) 93, 358, 615, 628, 1145, 2201, 2369, 2390, 2934
BseNI ACTGG 7 cut(s) 141, 1801, 2000, 2122, 2168, 2836, 2905
BseRI GAGGAG 3 cut(s) 142, 669, 2271
BseSI GKGCMC 1 cut(s) 2522
BseXI GCAGC 4 cut(s) 258, 826, 1750, 3075
BseYI CCCAGC 4 cut(s) 159, 421, 439, 1733
BsgI GTGCAG 1 cut(s) 1199
Bsh1236I CGCG 2 cut(s) 815, 2785
Bsh1285I CGRYCG 1 cut(s) 1480
BshFI GGCC 2 cut(s) 248, 1190
BshNI GGYRCC 1 cut(s) 2027
BsiEI CGRYCG 1 cut(s) 1480
BsiHKAI GWGCWC 3 cut(s) 345, 1231, 2839
BsiHKCI CYCGRG 2 cut(s) 1429, 2992
BsiSI CCGG 4 cut(s) 565, 596, 764, 1959
BslFI GGGAC 3 cut(s) 1071, 2204, 2768
BslI CCNNNNNNNGG 6 cut(s) 24, 501, 571, 2022, 2062, 2419
BsmAI GTCTC 8 cut(s) 82, 87, 89, 404, 483, 2008, 2795, 2939
BsmBI CGTCTC 1 cut(s) 483
BsmFI GGGAC 3 cut(s) 1071, 2204, 2768
BsmI GAATGC 2 cut(s) 907, 921
BsnI GGCC 2 cut(s) 248, 1190
Bso31I GGTCTC 3 cut(s) 87, 89, 404
BsoBI CYCGRG 2 cut(s) 1429, 2992
Bsp1286I GDGCHC 7 cut(s) 143, 345, 1231, 1914, 2328, 2522, 2839
Bsp13I TCCGGA 1 cut(s) 763
Bsp1407I TGTACA 2 cut(s) 9, 735
Bsp143I GATC 7 cut(s) 1425, 1728, 1886, 1963, 2575, 2614, 2903
Bsp19I CCATGG 1 cut(s) 364
BspACI CCGC 9 cut(s) 232, 235, 384, 414, 649, 813, 1236, 2611, 2656
BspANI GGCC 2 cut(s) 248, 1190
BspCNI CTCAG 9 cut(s) 92, 357, 616, 627, 1146, 2202, 2368, 2389, 2935
BspEI TCCGGA 1 cut(s) 763
BspFNI CGCG 2 cut(s) 815, 2785
BspHI TCATGA 2 cut(s) 1725, 1824
BspLI GGNNCC 8 cut(s) 142, 230, 897, 1975, 2029, 2220, 2629, 2873
BspMI ACCTGC 1 cut(s) 1844
BspPI GGATC 2 cut(s) 2622, 2911
BspT107I GGYRCC 1 cut(s) 2027
BspTNI GGTCTC 3 cut(s) 87, 89, 404
BsrDI GCAATG 3 cut(s) 281, 416, 1163
BsrFI RCCGGY 1 cut(s) 1958
BsrGI TGTACA 2 cut(s) 9, 735
BsrI ACTGG 7 cut(s) 141, 1801, 2000, 2122, 2168, 2836, 2905
BssAI RCCGGY 1 cut(s) 1958
BssECI CCNNGG 7 cut(s) 364, 565, 1112, 1192, 2221, 2515, 2631
BssMI GATC 7 cut(s) 1425, 1728, 1886, 1963, 2575, 2614, 2903
BssNI GRCGYC 4 cut(s) 204, 492, 2028, 3096
BssSI CACGAG 1 cut(s) 242
BssT1I CCWWGG 3 cut(s) 364, 1192, 2631
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 5 cut(s) 1401, 2223, 2516, 2582, 2913
Bst4CI ACNGT 4 cut(s) 1496, 2231, 2759, 2871
Bst6I CTCTTC 1 cut(s) 2289
BstACI GRCGYC 4 cut(s) 204, 492, 2028, 3096
BstAUI TGTACA 2 cut(s) 9, 735
BstBAI YACGTR 1 cut(s) 1760
BstC8I GCNNGC 6 cut(s) 950, 1188, 1540, 2017, 2638, 2771
BstDSI CCRYGG 2 cut(s) 364, 1112
BstEII GGTNACC 2 cut(s) 1023, 1658
BstENI CCTNNNNNAGG 1 cut(s) 22
BstF5I GGATG 9 cut(s) 403, 457, 576, 1315, 1396, 2048, 2067, 2428, 3034
BstFNI CGCG 2 cut(s) 815, 2785
BstH2I RGCGCY 1 cut(s) 2031
BstHHI GCGC 2 cut(s) 2030, 2787
BstKTI GATC 7 cut(s) 1428, 1731, 1889, 1966, 2578, 2617, 2906
BstMAI GTCTC 8 cut(s) 82, 87, 89, 404, 483, 2008, 2795, 2939
BstMBI GATC 7 cut(s) 1425, 1728, 1886, 1963, 2575, 2614, 2903
BstMCI CGRYCG 1 cut(s) 1480
BstMWI GCNNNNNNNGC 4 cut(s) 285, 747, 1235, 2025
BstNI CCWGG 5 cut(s) 1401, 2223, 2516, 2582, 2913
BstNSI RCATGY 6 cut(s) 16, 485, 1222, 1645, 1935, 2773
BstPI GGTNACC 2 cut(s) 1023, 1658
BstSCI CCNGG 6 cut(s) 564, 1399, 2221, 2514, 2580, 2911
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 1 cut(s) 2522
BstUI CGCG 2 cut(s) 815, 2785
BstV1I GCAGC 4 cut(s) 258, 826, 1750, 3075
BstV2I GAAGAC 1 cut(s) 2638
BstX2I RGATCY 1 cut(s) 2614
BstYI RGATCY 1 cut(s) 2614
BsuI GTATCC 2 cut(s) 709, 2219
BsuRI GGCC 2 cut(s) 248, 1190
BtgI CCRYGG 2 cut(s) 364, 1112
BtgZI GCGATG 2 cut(s) 776, 830
BtrI CACGTC 1 cut(s) 2449
BtsCI GGATG 9 cut(s) 403, 457, 576, 1315, 1396, 2048, 2067, 2428, 3034
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 7 cut(s) 47, 352, 622, 672, 798, 2115, 2236
BveI ACCTGC 1 cut(s) 1844
Cac8I GCNNGC 6 cut(s) 950, 1188, 1540, 2017, 2638, 2771
CaiI CAGNNNCTG 2 cut(s) 1859, 2006
CciI TCATGA 2 cut(s) 1725, 1824
CfoI GCGC 2 cut(s) 2030, 2787
Cfr10I RCCGGY 1 cut(s) 1958
Cfr13I GGNCC 5 cut(s) 361, 810, 1189, 2218, 2658
CseI GACGC 3 cut(s) 193, 500, 2791
Csp6I GTAC 5 cut(s) 10, 593, 736, 1342, 2730
CviQI GTAC 5 cut(s) 10, 593, 736, 1342, 2730
DinI GGCGCC 1 cut(s) 2029
DpnI GATC 7 cut(s) 1427, 1730, 1888, 1965, 2577, 2616, 2905
DpnII GATC 7 cut(s) 1425, 1728, 1886, 1963, 2575, 2614, 2903
DriI GACNNNNNGTC 2 cut(s) 496, 1666
Eam1104I CTCTTC 1 cut(s) 2289
Eam1105I GACNNNNNGTC 2 cut(s) 496, 1666
EarI CTCTTC 1 cut(s) 2289
EciI GGCGGA 1 cut(s) 664
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 3 cut(s) 364, 1192, 2631
Eco24I GRGCYC 4 cut(s) 143, 345, 1914, 2328
Eco31I GGTCTC 3 cut(s) 87, 89, 404
Eco32I GATATC 1 cut(s) 1984
Eco47I GGWCC 4 cut(s) 361, 810, 2218, 2658
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 1649, 2172
Eco88I CYCGRG 2 cut(s) 1429, 2992
Eco91I GGTNACC 2 cut(s) 1023, 1658
EcoICRI GAGCTC 1 cut(s) 343
EcoNI CCTNNNNNAGG 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 2218
EcoO65I GGTNACC 2 cut(s) 1023, 1658
EcoRI GAATTC 2 cut(s) 1417, 2501
EcoRII CCWGG 5 cut(s) 1399, 2221, 2514, 2580, 2911
EcoRV GATATC 1 cut(s) 1984
EcoT14I CCWWGG 3 cut(s) 364, 1192, 2631
EcoT22I ATGCAT 1 cut(s) 483
EcoT38I GRGCYC 4 cut(s) 143, 345, 1914, 2328
EgeI GGCGCC 1 cut(s) 2029
EheI GGCGCC 1 cut(s) 2029
ErhI CCWWGG 3 cut(s) 364, 1192, 2631
Esp3I CGTCTC 1 cut(s) 483
FalI AAGNNNNNCTT 2 cut(s) 2836, 2868
FaqI GGGAC 3 cut(s) 1071, 2204, 2768
FauI CCCGC 2 cut(s) 377, 2604
FauNDI CATATG 2 cut(s) 2021, 3047
FblI GTMKAC 1 cut(s) 999
Fnu4HI GCNGC 6 cut(s) 235, 272, 840, 1236, 1764, 3089
FokI GGATG 9 cut(s) 410, 464, 583, 1322, 1383, 2055, 2074, 2435, 3021
FriOI GRGCYC 4 cut(s) 143, 345, 1914, 2328
Fsp4HI GCNGC 6 cut(s) 235, 272, 840, 1236, 1764, 3089
FspBI CTAG 4 cut(s) 74, 660, 860, 3133
GlaI GCGC 2 cut(s) 2029, 2786
GluI GCNGC 6 cut(s) 235, 272, 840, 1236, 1764, 3089
GsaI CCCAGC 4 cut(s) 163, 425, 443, 1737
GsuI CTGGAG 3 cut(s) 909, 2292, 2564
HaeII RGCGCY 1 cut(s) 2031
HaeIII GGCC 2 cut(s) 248, 1190
HapII CCGG 4 cut(s) 565, 596, 764, 1959
HgaI GACGC 3 cut(s) 193, 500, 2791
HhaI GCGC 2 cut(s) 2030, 2787
Hin1I GRCGYC 4 cut(s) 204, 492, 2028, 3096
Hin6I GCGC 2 cut(s) 2028, 2785
HinP1I GCGC 2 cut(s) 2028, 2785
HincII GTYRAC 2 cut(s) 1942, 2488
HindII GTYRAC 2 cut(s) 1942, 2488
HindIII AAGCTT 2 cut(s) 1536, 2561
HpaII CCGG 4 cut(s) 565, 596, 764, 1959
HphI GGTGA 9 cut(s) 350, 553, 586, 1017, 1507, 1571, 1670, 1973, 3033
Hpy166II GTNNAC 7 cut(s) 696, 1000, 1579, 1942, 2305, 2352, 2488
Hpy8I GTNNAC 7 cut(s) 696, 1000, 1579, 1942, 2305, 2352, 2488
HpyCH4III ACNGT 4 cut(s) 1496, 2231, 2759, 2871
HpyCH4IV ACGT 4 cut(s) 911, 1759, 2448, 3096
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 747, 1235, 2025
HpySE526I ACGT 4 cut(s) 911, 1759, 2448, 3096
Hsp92I GRCGYC 4 cut(s) 204, 492, 2028, 3096
HspAI GCGC 2 cut(s) 2028, 2785
KasI GGCGCC 1 cut(s) 2027
Kpn2I TCCGGA 1 cut(s) 763
Kzo9I GATC 7 cut(s) 1425, 1728, 1886, 1963, 2575, 2614, 2903
LmnI GCTCC 7 cut(s) 146, 436, 656, 895, 1547, 1973, 2267
Lsp1109I GCAGC 4 cut(s) 258, 826, 1750, 3075
LweI GCATC 9 cut(s) 388, 445, 812, 867, 1173, 1279, 2002, 2088, 2413
MaeI CTAG 4 cut(s) 74, 660, 860, 3133
MaeII ACGT 4 cut(s) 911, 1759, 2448, 3096
MalI GATC 7 cut(s) 1427, 1730, 1888, 1965, 2577, 2616, 2905
MboI GATC 7 cut(s) 1425, 1728, 1886, 1963, 2575, 2614, 2903
MboII GAAGA 5 cut(s) 1877, 2276, 2638, 3028, 3075
MflI RGATCY 1 cut(s) 2614
MhlI GDGCHC 7 cut(s) 143, 345, 1231, 1914, 2328, 2522, 2839
Mly113I GGCGCC 1 cut(s) 2028
MmeI TCCRAC 1 cut(s) 534
Mph1103I ATGCAT 1 cut(s) 483
MroI TCCGGA 1 cut(s) 763
MseI TTAA 9 cut(s) 873, 1083, 1523, 1989, 2073, 2103, 2189, 2715, 3114
MslI CAYNNNNRTG 5 cut(s) 675, 926, 1854, 2478, 3046
MspI CCGG 4 cut(s) 565, 596, 764, 1959
MspR9I CCNGG 6 cut(s) 566, 1401, 2223, 2516, 2582, 2913
Mva1269I GAATGC 2 cut(s) 907, 921
MvaI CCWGG 5 cut(s) 1401, 2223, 2516, 2582, 2913
MvnI CGCG 2 cut(s) 815, 2785
MwoI GCNNNNNNNGC 4 cut(s) 285, 747, 1235, 2025
NarI GGCGCC 1 cut(s) 2028
NciI CCSGG 1 cut(s) 566
NcoI CCATGG 1 cut(s) 364
NdeI CATATG 2 cut(s) 2021, 3047
NdeII GATC 7 cut(s) 1425, 1728, 1886, 1963, 2575, 2614, 2903
NlaIV GGNNCC 8 cut(s) 142, 230, 897, 1975, 2029, 2220, 2629, 2873
NmuCI GTSAC 7 cut(s) 604, 907, 1023, 1513, 1658, 2462, 2510
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 6 cut(s) 16, 485, 1222, 1645, 1935, 2773
PaeI GCATGC 1 cut(s) 2773
PaeR7I CTCGAG 1 cut(s) 2992
PagI TCATGA 2 cut(s) 1725, 1824
PaqCI CACCTGC 1 cut(s) 1844
PciI ACATGT 1 cut(s) 1641
PctI GAATGC 2 cut(s) 907, 921
PfeI GAWTC 7 cut(s) 599, 1013, 1208, 1364, 1800, 2049, 2262
PflMI CCANNNNNTGG 2 cut(s) 2022, 2062
PfoI TCCNGGA 1 cut(s) 2580
PkrI GCNGC 6 cut(s) 236, 273, 841, 1237, 1765, 3090
PluTI GGCGCC 1 cut(s) 2031
Ppu21I YACGTR 1 cut(s) 1760
PpuMI RGGWCCY 1 cut(s) 2218
PscI ACATGT 1 cut(s) 1641
PshBI ATTAAT 1 cut(s) 2189
Psp124BI GAGCTC 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 2218
Psp6I CCWGG 5 cut(s) 1399, 2221, 2514, 2580, 2911
PspEI GGTNACC 2 cut(s) 1023, 1658
PspFI CCCAGC 4 cut(s) 159, 421, 439, 1733
PspGI CCWGG 5 cut(s) 1399, 2221, 2514, 2580, 2911
PspN4I GGNNCC 8 cut(s) 142, 230, 897, 1975, 2029, 2220, 2629, 2873
PspPI GGNCC 5 cut(s) 361, 810, 1189, 2218, 2658
PspPPI RGGWCCY 1 cut(s) 2218
PspXI VCTCGAGB 1 cut(s) 2992
PstNI CAGNNNCTG 2 cut(s) 1859, 2006
PsuI RGATCY 1 cut(s) 2614
RsaI GTAC 5 cut(s) 11, 594, 737, 1343, 2731
RsaNI GTAC 5 cut(s) 10, 593, 736, 1342, 2730
RseI CAYNNNNRTG 5 cut(s) 675, 926, 1854, 2478, 3046
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 9 cut(s) 873, 1083, 1523, 1989, 2073, 2103, 2189, 2715, 3114
SatI GCNGC 6 cut(s) 235, 272, 840, 1236, 1764, 3089
Sau3AI GATC 7 cut(s) 1425, 1728, 1886, 1963, 2575, 2614, 2903
Sau96I GGNCC 5 cut(s) 361, 810, 1189, 2218, 2658
ScrFI CCNGG 6 cut(s) 566, 1401, 2223, 2516, 2582, 2913
SduI GDGCHC 7 cut(s) 143, 345, 1231, 1914, 2328, 2522, 2839
SfaNI GCATC 9 cut(s) 388, 445, 812, 867, 1173, 1279, 2002, 2088, 2413
SfcI CTRYAG 1 cut(s) 996
SfoI GGCGCC 1 cut(s) 2029
Sfr274I CTCGAG 1 cut(s) 2992
SinI GGWCC 4 cut(s) 361, 810, 2218, 2658
SlaI CTCGAG 1 cut(s) 2992
SmiMI CAYNNNNRTG 5 cut(s) 675, 926, 1854, 2478, 3046
SmlI CTYRAG 4 cut(s) 1499, 1674, 2949, 2992
SmoI CTYRAG 4 cut(s) 1499, 1674, 2949, 2992
SphI GCATGC 1 cut(s) 2773
SsiI CCGC 9 cut(s) 232, 235, 384, 414, 649, 813, 1236, 2611, 2656
SspDI GGCGCC 1 cut(s) 2027
SspI AATATT 2 cut(s) 1380, 1831
SspMI CTAG 4 cut(s) 74, 660, 860, 3133
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 6 cut(s) 564, 1399, 2221, 2514, 2580, 2911
StyI CCWWGG 3 cut(s) 364, 1192, 2631
TaaI ACNGT 4 cut(s) 1496, 2231, 2759, 2871
TaiI ACGT 4 cut(s) 914, 1762, 2451, 3099
TaqII GACCGA 1 cut(s) 1494
TatI WGTACW 4 cut(s) 9, 735, 1341, 2729
TauI GCSGC 2 cut(s) 237, 1238
TfiI GAWTC 7 cut(s) 599, 1013, 1208, 1364, 1800, 2049, 2262
Tru1I TTAA 9 cut(s) 873, 1083, 1523, 1989, 2073, 2103, 2189, 2715, 3114
Tru9I TTAA 9 cut(s) 873, 1083, 1523, 1989, 2073, 2103, 2189, 2715, 3114
TscAI CASTG 7 cut(s) 54, 352, 622, 672, 805, 2122, 2236
TseFI GTSAC 7 cut(s) 604, 907, 1023, 1513, 1658, 2462, 2510
TseI GCWGC 4 cut(s) 271, 839, 1763, 3088
Tsp45I GTSAC 7 cut(s) 604, 907, 1023, 1513, 1658, 2462, 2510
TspGWI ACGGA 3 cut(s) 592, 1101, 2322
TspRI CASTG 7 cut(s) 54, 352, 622, 672, 805, 2122, 2236
Van91I CCANNNNNTGG 2 cut(s) 2022, 2062
VpaK11BI GGWCC 4 cut(s) 361, 810, 2218, 2658
VspI ATTAAT 1 cut(s) 2189
XagI CCTNNNNNAGG 1 cut(s) 22
XapI RAATTY 7 cut(s) 1077, 1417, 1482, 2171, 2501, 2603, 2808
XceI RCATGY 6 cut(s) 16, 485, 1222, 1645, 1935, 2773
XhoI CTCGAG 1 cut(s) 2992
XmiI GTMKAC 1 cut(s) 999
XspI CTAG 4 cut(s) 74, 660, 860, 3133
ZraI GACGTC 1 cut(s) 3097
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.