Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000289.1

Orthogroup ID

OG0008501

Physical Location & Seq

Genomic Coordinates Forward (+)

189714 .. 190325

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgttttcttatagctcaaacgctattagcaccggtactactggcaattactacgaacctgccgtgccttttcctcatgaccaatcctttttgatccacagtaggccttttcttaattctactaccaatccaaattgcaattccgcttcagttatttccaattccaaacaagatcaagatctacaagaagaacctcatcatcatattcatcctcctttgtctttcttctacttcccctctccctttgaagacgacgatgttttactccaccaacaccaccaccaccatgacctgtcgtcgcttcatgaaaataccttatttacccatcatcatcatcatcatcgtcatcatcatcagaccggtactcctctcactgctacaatggtggagggggattctaacaaagatgatcaggtggtgatcggtaaggaaggtgagcaacagcaacaacaacagaaacagatcccgatgacgagaagatcttgcaagaaggaccggcacagcaagattagcactgcccgaggactgagggaccggagaatgagattgtccctcgatgttgccagaaagttctttggtttgcaagacatgctcggctttgacaaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

203

Amino Acids

23.48

Weight (kDa)

6.75

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	162 - 202	5.7e-22	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18550 AT3G18550 AT3G18550 AT3G18550
fragaria_vesca	FvH4_5g12710
malus_domestica	MD06G1211100.v1.1 MD14G1221800.v1.1
prunus_persica	Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1
pyrus_communis	pycom06g18840 pycom14g18340
rosa_chinensis	RchiOBHm_Chr7g0184601
rosa_laevigata	RLG00000004965
rosa_multiflora	Rmu_co8093794.1_g000001 Rmu_ssc0000289.1_g000032 Rmu_ssc0000289.1_g000033
rosa_roxburghii	Rroxscaffold_3G00269490
rosa_samantha	Rh7AG079000 Rh7BG068300 Rh7CG069100 Rh7DG068400
rosa_wichuraiana	Rw7G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	88, 457
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	37, 364
AgeI	ACCGGT	2 cut(s)	32, 359
AgsI	TTSAA	1 cut(s)	248
AhdI	GACNNNNNGTC	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
AlwI	GGATC	2 cut(s)	88, 457
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	1 cut(s)	104
AsiGI	ACCGGT	2 cut(s)	32, 359
AspS9I	GGNCC	2 cut(s)	493, 532
AsuHPI	GGTGA	2 cut(s)	430, 446
AvaI	CYCGRG	1 cut(s)	519
AvaII	GGWCC	2 cut(s)	493, 532
BbsI	GAAGAC	1 cut(s)	255
BccI	CCATC	1 cut(s)	333
BceAI	ACGGC	1 cut(s)	47
BclI	TGATCA	1 cut(s)	409
BfuAI	ACCTGC	1 cut(s)	67
BglII	AGATCT	2 cut(s)	178, 479
Bme18I	GGWCC	2 cut(s)	493, 532
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	2 cut(s)	493, 532
BmiI	GGNNCC	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	3 cut(s)	32, 359, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bse118I	RCCGGY	3 cut(s)	32, 359, 495
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	106
BshTI	ACCGGT	2 cut(s)	32, 359
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	4 cut(s)	33, 360, 496, 535
BslFI	GGGAC	2 cut(s)	535, 545
BsmFI	GGGAC	2 cut(s)	535, 545
BsnI	GGCC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	519
Bsp143I	GATC	7 cut(s)	93, 172, 178, 409, 420, 462, 479
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	519
BspHI	TCATGA	2 cut(s)	76, 304
BspLI	GGNNCC	1 cut(s)	533
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	2 cut(s)	88, 457
BsrFI	RCCGGY	3 cut(s)	32, 359, 495
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	3 cut(s)	32, 359, 495
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	7 cut(s)	93, 172, 178, 409, 420, 462, 479
Bst4CI	ACNGT	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	589
BstDEI	CTNAG	1 cut(s)	527
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	7 cut(s)	96, 175, 181, 412, 423, 465, 482
BstMBI	GATC	7 cut(s)	93, 172, 178, 409, 420, 462, 479
BstMWI	GCNNNNNNNGC	2 cut(s)	510, 589
BstNSI	RCATGY	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	3 cut(s)	178, 462, 479
BstYI	RGATCY	3 cut(s)	178, 462, 479
BsuRI	GGCC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	2 cut(s)	372, 513
BtsIMutI	CAGTG	2 cut(s)	372, 513
BveI	ACCTGC	1 cut(s)	67
CciI	TCATGA	2 cut(s)	76, 304
Cfr10I	RCCGGY	3 cut(s)	32, 359, 495
Cfr13I	GGNCC	2 cut(s)	493, 532
Csp6I	GTAC	2 cut(s)	36, 363
CspAI	ACCGGT	2 cut(s)	32, 359
CviAII	CATG	4 cut(s)	77, 287, 305, 589
CviJI	RGCY	3 cut(s)	15, 106, 597
CviKI_1	RGCY	3 cut(s)	15, 106, 597
CviQI	GTAC	2 cut(s)	36, 363
DdeI	CTNAG	1 cut(s)	527
DpnI	GATC	7 cut(s)	95, 174, 180, 411, 422, 464, 481
DpnII	GATC	7 cut(s)	93, 172, 178, 409, 420, 462, 479
DriI	GACNNNNNGTC	1 cut(s)	295
Eam1105I	GACNNNNNGTC	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	493, 532
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	519
FaeI	CATG	4 cut(s)	80, 290, 308, 592
FaiI	YATR	7 cut(s)	12, 78, 204, 288, 306, 590, 610
FaqI	GGGAC	2 cut(s)	535, 545
FatI	CATG	4 cut(s)	76, 286, 304, 588
FbaI	TGATCA	1 cut(s)	409
FokI	GGATG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	4 cut(s)	33, 360, 496, 535
Hin1II	CATG	4 cut(s)	80, 290, 308, 592
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	4 cut(s)	33, 360, 496, 535
HphI	GGTGA	2 cut(s)	430, 446
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	4 cut(s)	77, 176, 305, 466
Hpy99I	CGWCG	2 cut(s)	257, 301
HpyAV	CCTTC	2 cut(s)	425, 484
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	3 cut(s)	138, 486, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	510, 589
HpyF3I	CTNAG	1 cut(s)	527
Hsp92II	CATG	4 cut(s)	80, 290, 308, 592
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	7 cut(s)	93, 172, 178, 409, 420, 462, 479
LpnPI	CCDG	9 cut(s)	27, 46, 72, 305, 373, 398, 509, 548, 577
MalI	GATC	7 cut(s)	95, 174, 180, 411, 422, 464, 481
MboI	GATC	7 cut(s)	93, 172, 178, 409, 420, 462, 479
MboII	GAAGA	4 cut(s)	200, 217, 260, 489
MflI	RGATCY	3 cut(s)	178, 462, 479
MluCI	AATT	5 cut(s)	46, 115, 133, 139, 160
MnlI	CCTC	9 cut(s)	84, 204, 222, 247, 378, 382, 515, 522, 563
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	4 cut(s)	33, 360, 496, 535
MwoI	GCNNNNNNNGC	2 cut(s)	510, 589
NdeII	GATC	7 cut(s)	93, 172, 178, 409, 420, 462, 479
NlaIII	CATG	4 cut(s)	80, 290, 308, 592
NlaIV	GGNNCC	1 cut(s)	533
NmeAIII	GCCGAG	1 cut(s)	573
NspI	RCATGY	1 cut(s)	592
PagI	TCATGA	2 cut(s)	76, 304
PceI	AGGCCT	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	395
PinAI	ACCGGT	2 cut(s)	32, 359
PspN4I	GGNNCC	1 cut(s)	533
PspPI	GGNCC	2 cut(s)	493, 532
PsuI	RGATCY	3 cut(s)	178, 462, 479
RsaI	GTAC	2 cut(s)	37, 364
RsaNI	GTAC	2 cut(s)	36, 363
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	114
Sau3AI	GATC	7 cut(s)	93, 172, 178, 409, 420, 462, 479
Sau96I	GGNCC	2 cut(s)	493, 532
SetI	ASST	8 cut(s)	17, 61, 196, 294, 317, 417, 436, 609
SinI	GGWCC	2 cut(s)	493, 532
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	5 cut(s)	46, 115, 133, 139, 160
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	555
TasI	AATT	5 cut(s)	46, 115, 133, 139, 160
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	379, 520
TspDTI	ATGAA	3 cut(s)	197, 293, 321
TspRI	CASTG	2 cut(s)	379, 520
VpaK11BI	GGWCC	2 cut(s)	493, 532
XceI	RCATGY	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.