Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000289.1

Orthogroup ID

OG0008501

Physical Location & Seq

Genomic Coordinates Forward (+)

190399 .. 191379

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atggtggagggggattctaacaaagatgatcaggtggtgatcggtaaggaaggtgagcaacagcaacaacaacagaaacagatcccgatgacgagaagatcttgcaagaaggaccggcacagcaagattagcactgcccgaggactgagggaccggagaatgagattgtccctcgatgttgccagaaagttctttggtttgcaagacatgctcggctttgacaaggccagcaagacggtggagtggttgctcaatcaggcagaagctgaaatcaagaaagtaaaaagagaaatgaacggtcagaacgaaaaccaaagctctagcactactaccgccgcaggagcaggtgctagagccagaaccacatcatccatatccgagtgtgaagttgtatccggtacagatgaggtcgcgactgatgatattattgataaggtaagccggacatcctcttcttcttctgccaaaaatcggatcaaaaggactgtcaggcaaccaaagaagagtgcattgtttaaccctcttgcaaaggcgtcaagggaaatggcaagagcgagagcaagagaaagaactagagaaaagatggggagacagtcaaagccatgtggtgatgttgatcaggcaaagaagatgaagccggacctgagccaattaagttcatggagtacatttgaaaccggagaagaatctggagcgactcaaagccacaacaacaacatcaacaatcattctccattggaagcacttgctgaggttgaagagccaataagcagcttccaagcagctgcgactacggtagtagttcatcgtcatattcatcaagacttgattgaaattgatggtcatgatgctgtagctaacttggtgacaatgggaaagtggagcccctcttccactttcaattctcttcaaaatacttctggatcaatttcacaagaggtatgtagtaccactactcgaataatcttttgtgctgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

326

Amino Acids

36.0

Weight (kDa)

9.26

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	35 - 196	4.3e-45	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18550 AT3G18550 AT3G18550 AT3G18550
fragaria_vesca	FvH4_5g12710
malus_domestica	MD06G1211100.v1.1 MD14G1221800.v1.1
prunus_persica	Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1
pyrus_communis	pycom06g18840 pycom14g18340
rosa_chinensis	RchiOBHm_Chr7g0184601
rosa_laevigata	RLG00000004965
rosa_multiflora	Rmu_co8093794.1_g000001 Rmu_ssc0000289.1_g000032 Rmu_ssc0000289.1_g000033
rosa_roxburghii	Rroxscaffold_3G00269490
rosa_samantha	Rh7AG079000 Rh7BG068300 Rh7CG069100 Rh7DG068400
rosa_wichuraiana	Rw7G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	335
AccII	CGCG	1 cut(s)	413
AciI	CCGC	2 cut(s)	333, 336
AclWI	GGATC	3 cut(s)	76, 482, 931
AcyI	GRCGYC	1 cut(s)	533
AfaI	GTAC	3 cut(s)	400, 667, 949
AfiI	CCNNNNNNNGG	1 cut(s)	471
AgsI	TTSAA	5 cut(s)	674, 758, 833, 901, 911
AluBI	AGCT	5 cut(s)	266, 318, 774, 785, 857
AluI	AGCT	5 cut(s)	266, 318, 774, 785, 857
Alw26I	GTCTC	1 cut(s)	583
AlwI	GGATC	3 cut(s)	76, 482, 931
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	3 cut(s)	771, 782, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	471, 503
AspS9I	GGNCC	3 cut(s)	112, 151, 640
AsuHPI	GGTGA	4 cut(s)	49, 65, 620, 877
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	3 cut(s)	112, 151, 640
BanII	GRGCYC	1 cut(s)	887
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	3 cut(s)	772, 783, 794
BccI	CCATC	2 cut(s)	577, 833
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	2 cut(s)	28, 616
BcoDI	GTCTC	1 cut(s)	583
BfaI	CTAG	3 cut(s)	321, 351, 573
BfmI	CTRYAG	1 cut(s)	852
BfuAI	ACCTGC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	403
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	4 cut(s)	336, 772, 783, 786
BlsI	GCNGC	4 cut(s)	337, 773, 784, 787
Bme18I	GGWCC	3 cut(s)	112, 151, 640
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	3 cut(s)	112, 151, 640
BmiI	GGNNCC	2 cut(s)	152, 884
BmsI	GCATC	1 cut(s)	838
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	2 cut(s)	644, 750
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	3 cut(s)	153, 395, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse118I	RCCGGY	1 cut(s)	114
Bse8I	GATNNNNATC	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	368, 446
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMII	CTCAG	3 cut(s)	137, 635, 741
BseXI	GCAGC	3 cut(s)	772, 783, 794
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	6 cut(s)	115, 154, 396, 442, 638, 678
BslFI	GGGAC	2 cut(s)	154, 164
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	583
BsmFI	GGGAC	2 cut(s)	154, 164
BsnI	GGCC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	887
Bsp143I	GATC	7 cut(s)	28, 39, 81, 98, 474, 616, 923
Bsp68I	TCGCGA	1 cut(s)	413
BspACI	CCGC	2 cut(s)	333, 336
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	3 cut(s)	138, 636, 742
BspFNI	CGCG	1 cut(s)	413
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	2 cut(s)	152, 884
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	3 cut(s)	76, 482, 931
BspQI	GCTCTTC	1 cut(s)	753
BsrFI	RCCGGY	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	7 cut(s)	28, 39, 81, 98, 474, 616, 923
BssNI	GRCGYC	1 cut(s)	533
Bst4CI	ACNGT	5 cut(s)	238, 299, 487, 594, 796
Bst6I	CTCTTC	5 cut(s)	457, 497, 753, 895, 912
BstACI	GRCGYC	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	3 cut(s)	146, 644, 750
BstF5I	GGATG	2 cut(s)	368, 446
BstFNI	CGCG	1 cut(s)	413
BstKTI	GATC	7 cut(s)	31, 42, 84, 101, 477, 619, 926
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	7 cut(s)	28, 39, 81, 98, 474, 616, 923
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 208, 341
BstNSI	RCATGY	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	852
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	3 cut(s)	772, 783, 794
BstX2I	RGATCY	2 cut(s)	81, 98
BstYI	RGATCY	2 cut(s)	81, 98
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	368, 446
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
BtuMI	TCGCGA	1 cut(s)	413
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	266
CciI	TCATGA	1 cut(s)	844
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	112, 151, 640
CseI	GACGC	1 cut(s)	522
Csp6I	GTAC	3 cut(s)	399, 666, 948
CviAII	CATG	4 cut(s)	208, 603, 660, 845
CviQI	GTAC	3 cut(s)	399, 666, 948
DdeI	CTNAG	3 cut(s)	146, 644, 750
DpnI	GATC	7 cut(s)	30, 41, 83, 100, 476, 618, 925
DpnII	GATC	7 cut(s)	28, 39, 81, 98, 474, 616, 923
Eam1104I	CTCTTC	5 cut(s)	457, 497, 753, 895, 912
EarI	CTCTTC	5 cut(s)	457, 497, 753, 895, 912
Eco24I	GRGCYC	1 cut(s)	887
Eco47I	GGWCC	3 cut(s)	112, 151, 640
Eco88I	CYCGRG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	887
FaeI	CATG	4 cut(s)	211, 606, 663, 848
FaiI	YATR	8 cut(s)	209, 374, 604, 661, 813, 846, 943, 979
FaqI	GGGAC	2 cut(s)	154, 164
FatI	CATG	4 cut(s)	207, 602, 659, 844
FbaI	TGATCA	2 cut(s)	28, 616
Fnu4HI	GCNGC	4 cut(s)	336, 772, 783, 786
FokI	GGATG	2 cut(s)	355, 433
FriOI	GRGCYC	1 cut(s)	887
Fsp4HI	GCNGC	4 cut(s)	336, 772, 783, 786
FspBI	CTAG	3 cut(s)	321, 351, 573
GluI	GCNGC	4 cut(s)	336, 772, 783, 786
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	6 cut(s)	115, 154, 396, 442, 638, 678
HgaI	GACGC	1 cut(s)	522
Hin1I	GRCGYC	1 cut(s)	533
Hin1II	CATG	4 cut(s)	211, 606, 663, 848
HinfI	GANTC	3 cut(s)	14, 686, 697
HpaII	CCGG	6 cut(s)	115, 154, 396, 442, 638, 678
HphI	GGTGA	4 cut(s)	49, 65, 620, 877
Hpy188I	TCNGA	3 cut(s)	303, 379, 474
Hpy188III	TCNNGA	7 cut(s)	85, 274, 412, 690, 821, 845, 921
HpyAV	CCTTC	2 cut(s)	44, 103
HpyCH4III	ACNGT	5 cut(s)	238, 299, 487, 594, 796
HpyCH4V	TGCA	4 cut(s)	105, 202, 509, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 208, 341
HpyF3I	CTNAG	3 cut(s)	146, 644, 750
Hsp92I	GRCGYC	1 cut(s)	533
Hsp92II	CATG	4 cut(s)	211, 606, 663, 848
Ksp22I	TGATCA	2 cut(s)	28, 616
Kzo9I	GATC	7 cut(s)	28, 39, 81, 98, 474, 616, 923
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	3 cut(s)	341, 692, 882
Lsp1109I	GCAGC	3 cut(s)	772, 783, 794
LweI	GCATC	1 cut(s)	838
MaeI	CTAG	3 cut(s)	321, 351, 573
MaeIII	GTNAC	1 cut(s)	865
MalI	GATC	7 cut(s)	30, 41, 83, 100, 476, 618, 925
MboI	GATC	7 cut(s)	28, 39, 81, 98, 474, 616, 923
MflI	RGATCY	2 cut(s)	81, 98
MhlI	GDGCHC	1 cut(s)	887
MluCI	AATT	4 cut(s)	650, 834, 901, 927
MlyI	GAGTC	1 cut(s)	691
MnlI	CCTC	9 cut(s)	134, 141, 182, 400, 460, 531, 745, 898, 931
MseI	TTAA	2 cut(s)	516, 653
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	6 cut(s)	115, 154, 396, 442, 638, 678
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	3 cut(s)	129, 208, 341
NdeII	GATC	7 cut(s)	28, 39, 81, 98, 474, 616, 923
NlaIII	CATG	4 cut(s)	211, 606, 663, 848
NlaIV	GGNNCC	2 cut(s)	152, 884
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	865
NruI	TCGCGA	1 cut(s)	413
NspI	RCATGY	1 cut(s)	211
PagI	TCATGA	1 cut(s)	844
PaqCI	CACCTGC	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	14, 686
PkrI	GCNGC	4 cut(s)	337, 773, 784, 787
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PspN4I	GGNNCC	2 cut(s)	152, 884
PspPI	GGNCC	3 cut(s)	112, 151, 640
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	81, 98
PvuII	CAGCTG	1 cut(s)	785
RruI	TCGCGA	1 cut(s)	413
RsaI	GTAC	3 cut(s)	400, 667, 949
RsaNI	GTAC	3 cut(s)	399, 666, 948
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	516, 653
SatI	GCNGC	4 cut(s)	336, 772, 783, 786
Sau3AI	GATC	7 cut(s)	28, 39, 81, 98, 474, 616, 923
Sau96I	GGNCC	3 cut(s)	112, 151, 640
SchI	GAGTC	1 cut(s)	691
SduI	GDGCHC	1 cut(s)	887
SfaNI	GCATC	1 cut(s)	838
SfcI	CTRYAG	1 cut(s)	852
SinI	GGWCC	3 cut(s)	112, 151, 640
Sse9I	AATT	4 cut(s)	650, 834, 901, 927
SsiI	CCGC	2 cut(s)	333, 336
SspMI	CTAG	3 cut(s)	321, 351, 573
TaaI	ACNGT	5 cut(s)	238, 299, 487, 594, 796
TaqI	TCGA	2 cut(s)	174, 958
TasI	AATT	4 cut(s)	650, 834, 901, 927
TatI	WGTACW	1 cut(s)	665
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	2 cut(s)	14, 686
Tru1I	TTAA	2 cut(s)	516, 653
Tru9I	TTAA	2 cut(s)	516, 653
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	865
TseI	GCWGC	3 cut(s)	771, 782, 785
Tsp45I	GTSAC	1 cut(s)	865
TspDTI	ATGAA	5 cut(s)	308, 647, 648, 794, 806
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	3 cut(s)	112, 151, 640
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XspI	CTAG	3 cut(s)	321, 351, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.