Rmu_ssc0000350.1_g000034

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000350.1
OG0009808
Physical Location & Seq
Reverse (-)
192692 .. 198528
5837 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2388 bp
atgtttcgaccttgcatagctctgctagggttggaagagtgccaccttcgggcttggcctctctgtacctttctccatcctgcgtggagtacaccttcggcgtcccctttggggttgcccaaatctgttcctactgtcgttgtggtttctctgtggcagaagtttttcaggccttcatggctgtctggtgtggaggcttgtgttttatcggatcattctcctgctgtgcaggcccgtacagccccattggaggctccgtgttgcggtggctcatctaggcctaggcgagcacgactcaaatgtcatgatataatgatggcggcggcgctggcagatctgggaggatcttggtgggcgcagttggtgactgggcgaattcccatgtcgggtcagcaggaatctcgacatggagagcttctagttgttcggcgtctggatgctcggctatccatttgggtcttgtggcaagaccaaggtgcaacggtgaaggagagatgcagaagagaagaagccggtggtactgcagcaaggaacgaaggagatggcagcggacgtcgggctggagccaagatgcccaagtgcttgggtgcccagatcagattaaggtgggcttgggcttgtgtcaagtttgactcgtcagatttgatcactttggattcaagctggatttggatcggtatttgggacccgggtcgtattcaaatccggatattggatccgagacagctactcatgttgatctggtatttgttctggttcttgggcgttcgtttgctaattttcgagtttttgacaccctcggttactttcgagctcccggtgagcgaatcacctctcctaggtgatcatatcatctattacgttagaattcgtcatatttaccgtgaagcaaatggtgttgctgatagacttgcgcaccttgctagtttgtttgctattgatgatgtttggttagatgagactcctgctactattcaggatgttctctacgaggattattggctttcagttgtggctaccacaaggaggctgccttcagattctggtgcttttgcagactgggtggggggctcatcagcttcgtcttcggctaacgatctctgtctaggcttcaatgctgggcctactgccggaccctccccctctgcctcagccgccatgtggtcgtcatcatcaggcccttccaggcccatcaactacggcttcccaccggagatgggtatgctcggccttcgagacgtcttccttgttgctccagctgcagcctaccacaatcacccgcaccaccaccaccaccccccccaccatcaacaagaccttctctcatctgatcataattccatgaatggctctaatccagccacagctctcggcgtcggcgtcattccactcctcaccaccaccccttgcctgggccctcccaataccaacatgaatgatgacaatgatgatgatgatgatcacaacatgctgagcggtcgcaacagaaacagtgcaggtggaggaggaggaggaggaagtattcacttgtggcagcagccgacccagcaacaacaccaacttttcctcaagagaaaccagaaccttcacggtggcgcccatttgatggttcaaggtggtggtgggaattttggtgcctcggcggcatcggcatcggcatcggcatcgtccgctctcacttgtcaagactgcgggaaccaggccaagaaagactgcagtcatcggcggtgcaggacatgctgcaagagccgtggttttgattgtgccacgcacgtgaagagcacgtgggtcccagcggctagacgcagggagcggcagctcatgtccgagggagtggcggcggccgggtcttctgcttctacctcgcacactaataatactagttccaatgccaaaaaaccaagactggttacttcgcaaaacacaactccctctcatacgaactccacttcaaacactacgccacccagaagctatgacagtacctccaaactccaacaccaagatggtggttttccagagacaatgccgggccaagtacgggcgccagcggtttttaagtgcgttcgagtaacggccgtggatgatggtgcagagggtgagtatgcctatcacgctgtcgtcaaaatcaacggtcatgtgtttaaggggttcttgtatgatcaaggggttgaaggtcaaggtagagatcatcatggcttcccaaatatttctgatttgcatttgggtggtagaagcggaggtgccactagtacccccccaaccggaagaaatggaggtgctccaatactcgaccccgcggatgcttatgcagccgctgcagcagcggcctccactagtggaggattgctgctgggagtgtcaaactttggtaactcaataaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

795

Amino Acids

85.47

Weight (kDa)

8.05

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 559 - 725 1.8e-59 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009808)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12330 AT5G12330 AT5G12330 AT5G12330
fragaria_vesca FvH4_3g27920
malus_domestica MD03G1166900.v1.1 MD11G1186100.v1.1
prunus_persica Prupe.4G267200_v2.0.a1
pyrus_communis pycom03g12230 pycom12g08680
rosa_chinensis RchiOBHm_Chr5g0050641
rosa_laevigata RLG00000034715
rosa_multiflora Rmu_ssc0000350.1_g000034
rosa_roxburghii Rroxscaffold_1G00030150
rosa_rugosa Rorug05G0262400 Rorug05G0262500
rosa_samantha Rh5AG334700 Rh5BG344000 Rh5CG371800 Rh5DG357000
rosa_wichuraiana Rw5G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1487
AasI GACNNNNNNGTC 1 cut(s) 300
AatII GACGTC 2 cut(s) 556, 1242
Acc16I TGCGCA 1 cut(s) 915
Acc36I ACCTGC 1 cut(s) 1487
AccB1I GGYRCC 5 cut(s) 587, 1595, 1634, 2044, 2243
AccB7I CCANNNNNTGG 1 cut(s) 1606
AccBSI CCGCTC 3 cut(s) 1476, 1673, 1813
AccII CGCG 1 cut(s) 2300
AccIII TCCGGA 1 cut(s) 705
AclWI GGATC 5 cut(s) 219, 352, 680, 710, 723
AcoI YGGCCR 2 cut(s) 1842, 2076
AcsI RAATTY 3 cut(s) 375, 867, 1627
AcuI CTGAAG 1 cut(s) 1020
AcvI CACGTG 2 cut(s) 1774, 1785
AcyI GRCGYC 8 cut(s) 101, 430, 553, 1239, 1374, 1380, 1596, 2045
AfaI GTAC 7 cut(s) 67, 91, 238, 520, 1984, 2040, 2254
AgsI TTSAA 6 cut(s) 660, 701, 1114, 1613, 1953, 2174
AhlI ACTAGT 3 cut(s) 1880, 2249, 2336
AjnI CCWGG 3 cut(s) 1184, 1410, 1698
AleI CACNNNNGTG 1 cut(s) 1772
Alw21I GWGCWC 4 cut(s) 292, 816, 1784, 2284
Alw26I GTCTC 4 cut(s) 715, 953, 1230, 2015
AlwI GGATC 5 cut(s) 219, 352, 680, 710, 723
AlwNI CAGNNNCTG 2 cut(s) 1043, 2318
Ama87I CYCGRG 1 cut(s) 688
Aor13HI TCCGGA 1 cut(s) 705
ApaI GGGCCC 1 cut(s) 1418
ApoI RAATTY 3 cut(s) 375, 867, 1627
Asp700I GAANNNNTTC 1 cut(s) 164
AspA2I CCTAGG 2 cut(s) 281, 838
AspLEI GCGC 5 cut(s) 328, 358, 916, 1598, 2047
AsuC2I CCSGG 5 cut(s) 689, 690, 818, 1846, 2031
AsuHPI GGTGA 8 cut(s) 376, 496, 822, 832, 854, 1268, 1387, 2111
AvaI CYCGRG 1 cut(s) 688
AvaII GGWCC 3 cut(s) 685, 1133, 1789
AvrII CCTAGG 2 cut(s) 281, 838
BaeGI GKGCMC 2 cut(s) 592, 1418
BamHI GGATCC 1 cut(s) 715
BanI GGYRCC 5 cut(s) 587, 1595, 1634, 2044, 2243
BanII GRGCYC 3 cut(s) 816, 1073, 1418
BbrPI CACGTG 2 cut(s) 1774, 1785
BbsI GAAGAC 3 cut(s) 1077, 1234, 1842
Bbv12I GWGCWC 4 cut(s) 292, 816, 1784, 2284
BbvCI CCTCAGC 1 cut(s) 1150
BccI CCATC 9 cut(s) 84, 310, 536, 1199, 1210, 1314, 1600, 2000, 2081
BceAI ACGGC 4 cut(s) 1216, 1734, 2063, 2091
BcgI CGANNNNNNTGC 8 cut(s) 383, 417, 1635, 1641, 1647, 1669, 1675, 1681
BciT130I CCWGG 3 cut(s) 1186, 1412, 1700
BclI TGATCA 5 cut(s) 645, 844, 1330, 1459, 2161
BcnI CCSGG 5 cut(s) 689, 690, 818, 1846, 2031
BcoDI GTCTC 4 cut(s) 715, 953, 1230, 2015
BcuI ACTAGT 3 cut(s) 1880, 2249, 2336
BfmI CTRYAG 4 cut(s) 522, 1260, 1714, 2319
BfoI RGCGCY 3 cut(s) 329, 1599, 2048
BfuAI ACCTGC 1 cut(s) 1487
BglI GCCNNNNNGGC 2 cut(s) 178, 1643
BglII AGATCT 1 cut(s) 334
BlnI CCTAGG 2 cut(s) 281, 838
BlpI GCTNAGC 1 cut(s) 1472
Bme1390I CCNGG 8 cut(s) 689, 690, 818, 1186, 1412, 1700, 1846, 2031
Bme18I GGWCC 3 cut(s) 685, 1133, 1789
BmeT110I CYCGRG 1 cut(s) 688
BmrFI CCNGG 8 cut(s) 689, 690, 818, 1186, 1412, 1700, 1846, 2031
BmrI ACTGGG 2 cut(s) 378, 1069
BmsI GCATC 8 cut(s) 427, 485, 561, 1655, 1661, 1667, 1673, 2293
BmuI ACTGGG 2 cut(s) 378, 1069
BoxI GACNNNNGTC 2 cut(s) 690, 1716
BpiI GAAGAC 3 cut(s) 1077, 1234, 1842
BplI GAGNNNNNCTC 2 cut(s) 279, 311
BpmI CTGGAG 2 cut(s) 582, 1239
Bpu10I CCTNAGC 1 cut(s) 1150
Bpu1102I GCTNAGC 1 cut(s) 1472
BpuEI CTTGAG 1 cut(s) 1553
BpuMI CCSGG 5 cut(s) 689, 690, 818, 1846, 2031
BsaAI YACGTR 2 cut(s) 1774, 1785
BsaBI GATNNNNATC 2 cut(s) 671, 1458
BsaHI GRCGYC 8 cut(s) 101, 430, 553, 1239, 1374, 1380, 1596, 2045
BsaWI WCCGGW 3 cut(s) 705, 1210, 2264
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 1970, 2000
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 3 cut(s) 373, 1064, 1911
Bse8I GATNNNNATC 2 cut(s) 671, 1458
BseAI TCCGGA 1 cut(s) 705
BseBI CCWGG 3 cut(s) 1186, 1412, 1700
BseGI GGATG 5 cut(s) 76, 442, 985, 2089, 2308
BseJI GATNNNNATC 2 cut(s) 671, 1458
BseMII CTCAG 2 cut(s) 1164, 1463
BseNI ACTGG 3 cut(s) 373, 1064, 1911
BseRI GAGGAG 5 cut(s) 1382, 1518, 1521, 1524, 1527
BseSI GKGCMC 2 cut(s) 592, 1418
BseX3I CGGCCG 2 cut(s) 1842, 2076
BseYI CCCAGC 4 cut(s) 1118, 1545, 1792, 2353
BsgI GTGCAG 4 cut(s) 248, 1515, 1750, 2112
Bsh1236I CGCG 1 cut(s) 2300
Bsh1285I CGRYCG 3 cut(s) 1480, 1845, 2079
BshNI GGYRCC 5 cut(s) 587, 1595, 1634, 2044, 2243
BsiEI CGRYCG 3 cut(s) 1480, 1845, 2079
BsiHKAI GWGCWC 4 cut(s) 292, 816, 1784, 2284
BsiHKCI CYCGRG 1 cut(s) 688
BsiSI CCGG 9 cut(s) 513, 689, 706, 818, 1131, 1211, 1845, 2030, 2265
BslFI GGGAC 3 cut(s) 88, 698, 1775
BsmAI GTCTC 4 cut(s) 715, 953, 1230, 2015
BsmBI CGTCTC 1 cut(s) 1230
BsmFI GGGAC 3 cut(s) 88, 698, 1775
BsoBI CYCGRG 1 cut(s) 688
Bsp120I GGGCCC 1 cut(s) 1414
Bsp1286I GDGCHC 7 cut(s) 292, 592, 816, 1073, 1418, 1784, 2284
Bsp13I TCCGGA 1 cut(s) 705
Bsp1720I GCTNAGC 1 cut(s) 1472
BspCNI CTCAG 2 cut(s) 1163, 1464
BspEI TCCGGA 1 cut(s) 705
BspFNI CGCG 1 cut(s) 2300
BspHI TCATGA 1 cut(s) 304
BspMAI CTGCAG 4 cut(s) 526, 1264, 1718, 2323
BspMI ACCTGC 1 cut(s) 1487
BspPI GGATC 5 cut(s) 219, 352, 680, 710, 723
BspQI GCTCTTC 1 cut(s) 1772
BspT107I GGYRCC 5 cut(s) 587, 1595, 1634, 2044, 2243
BsrBI CCGCTC 3 cut(s) 1476, 1673, 1813
BsrFI RCCGGY 1 cut(s) 512
BsrI ACTGG 3 cut(s) 373, 1064, 1911
BssAI RCCGGY 1 cut(s) 512
BssNI GRCGYC 8 cut(s) 101, 430, 553, 1239, 1374, 1380, 1596, 2045
BssT1I CCWWGG 3 cut(s) 281, 472, 838
Bst2UI CCWGG 3 cut(s) 1186, 1412, 1700
Bst4CI ACNGT 7 cut(s) 136, 484, 884, 1493, 1592, 1982, 2135
Bst6I CTCTTC 3 cut(s) 30, 496, 1772
BstACI GRCGYC 8 cut(s) 101, 430, 553, 1239, 1374, 1380, 1596, 2045
BstAPI GCANNNNNTGC 2 cut(s) 1737, 2318
BstBAI YACGTR 2 cut(s) 1774, 1785
BstC8I GCNNGC 4 cut(s) 231, 288, 330, 2049
BstDEI CTNAG 2 cut(s) 1150, 1472
BstDSI CCRYGG 3 cut(s) 1750, 2079, 2298
BstENI CCTNNNNNAGG 1 cut(s) 837
BstF5I GGATG 5 cut(s) 76, 442, 985, 2089, 2308
BstFNI CGCG 1 cut(s) 2300
BstH2I RGCGCY 3 cut(s) 329, 1599, 2048
BstHHI GCGC 5 cut(s) 328, 358, 916, 1598, 2047
BstMAI GTCTC 4 cut(s) 715, 953, 1230, 2015
BstMCI CGRYCG 3 cut(s) 1480, 1845, 2079
BstNI CCWGG 3 cut(s) 1186, 1412, 1700
BstNSI RCATGY 2 cut(s) 1471, 1740
BstPAI GACNNNNGTC 2 cut(s) 690, 1716
BstSCI CCNGG 8 cut(s) 687, 688, 816, 1184, 1410, 1698, 1844, 2029
BstSFI CTRYAG 4 cut(s) 522, 1260, 1714, 2319
BstSLI GKGCMC 2 cut(s) 592, 1418
BstUI CGCG 1 cut(s) 2300
BstV2I GAAGAC 3 cut(s) 1077, 1234, 1842
BstX2I RGATCY 3 cut(s) 334, 344, 715
BstXI CCANNNNNNTGG 2 cut(s) 583, 2009
BstYI RGATCY 3 cut(s) 334, 344, 715
BstZI CGGCCG 2 cut(s) 1842, 2076
BtgI CCRYGG 3 cut(s) 1750, 2079, 2298
BtsCI GGATG 5 cut(s) 76, 442, 985, 2089, 2308
BtsIMutI CAGTG 1 cut(s) 1498
BveI ACCTGC 1 cut(s) 1487
Cac8I GCNNGC 4 cut(s) 231, 288, 330, 2049
CaiI CAGNNNCTG 2 cut(s) 1043, 2318
CciI TCATGA 1 cut(s) 304
CfoI GCGC 5 cut(s) 328, 358, 916, 1598, 2047
Cfr10I RCCGGY 1 cut(s) 512
Cfr42I CCGCGG 1 cut(s) 2301
Cfr9I CCCGGG 1 cut(s) 688
CseI GACGC 5 cut(s) 90, 419, 1363, 1369, 1812
Csp6I GTAC 7 cut(s) 66, 90, 237, 519, 1983, 2039, 2253
CspCI CAANNNNNGTGG 2 cut(s) 1732, 1767
CviQI GTAC 7 cut(s) 66, 90, 237, 519, 1983, 2039, 2253
DdeI CTNAG 2 cut(s) 1150, 1472
DinI GGCGCC 2 cut(s) 1597, 2046
DrdI GACNNNNNNGTC 1 cut(s) 300
DseDI GACNNNNNNGTC 1 cut(s) 300
EaeI YGGCCR 2 cut(s) 1842, 2076
EagI CGGCCG 2 cut(s) 1842, 2076
Eam1104I CTCTTC 3 cut(s) 30, 496, 1772
EarI CTCTTC 3 cut(s) 30, 496, 1772
Ecl136II GAGCTC 1 cut(s) 814
EclXI CGGCCG 2 cut(s) 1842, 2076
Eco130I CCWWGG 3 cut(s) 281, 472, 838
Eco147I AGGCCT 2 cut(s) 172, 280
Eco24I GRGCYC 3 cut(s) 816, 1073, 1418
Eco47I GGWCC 3 cut(s) 685, 1133, 1789
Eco52I CGGCCG 2 cut(s) 1842, 2076
Eco53kI GAGCTC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 1020
Eco72I CACGTG 2 cut(s) 1774, 1785
Eco88I CYCGRG 1 cut(s) 688
EcoICRI GAGCTC 1 cut(s) 814
EcoNI CCTNNNNNAGG 1 cut(s) 837
EcoO109I RGGNCCY 4 cut(s) 685, 1178, 1415, 1789
EcoRI GAATTC 2 cut(s) 375, 867
EcoRII CCWGG 3 cut(s) 1184, 1410, 1698
EcoT14I CCWWGG 3 cut(s) 281, 472, 838
EcoT38I GRGCYC 3 cut(s) 816, 1073, 1418
EgeI GGCGCC 2 cut(s) 1597, 2046
EheI GGCGCC 2 cut(s) 1597, 2046
ErhI CCWWGG 3 cut(s) 281, 472, 838
Esp3I CGTCTC 1 cut(s) 1230
FalI AAGNNNNNCTT 4 cut(s) 595, 627, 2138, 2170
FaqI GGGAC 3 cut(s) 88, 698, 1775
FauI CCCGC 3 cut(s) 1287, 1685, 2305
FbaI TGATCA 5 cut(s) 645, 844, 1330, 1459, 2161
FokI GGATG 5 cut(s) 63, 449, 992, 2096, 2315
FriOI GRGCYC 3 cut(s) 816, 1073, 1418
FspI TGCGCA 1 cut(s) 915
GlaI GCGC 5 cut(s) 327, 357, 915, 1597, 2046
GsaI CCCAGC 4 cut(s) 1122, 1549, 1796, 2357
GsuI CTGGAG 2 cut(s) 582, 1239
HaeII RGCGCY 3 cut(s) 329, 1599, 2048
HapII CCGG 9 cut(s) 513, 689, 706, 818, 1131, 1211, 1845, 2030, 2265
HgaI GACGC 5 cut(s) 90, 419, 1363, 1369, 1812
HhaI GCGC 5 cut(s) 328, 358, 916, 1598, 2047
Hin1I GRCGYC 8 cut(s) 101, 430, 553, 1239, 1374, 1380, 1596, 2045
Hin6I GCGC 5 cut(s) 326, 356, 914, 1596, 2045
HinP1I GCGC 5 cut(s) 326, 356, 914, 1596, 2045
HinfI GANTC 7 cut(s) 294, 398, 632, 656, 827, 961, 1040
HpaII CCGG 9 cut(s) 513, 689, 706, 818, 1131, 1211, 1845, 2030, 2265
HphI GGTGA 8 cut(s) 376, 496, 822, 832, 854, 1268, 1387, 2111
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 8 cut(s) 211, 599, 640, 720, 1039, 1330, 1828, 2215
Hpy188III TCNNGA 9 cut(s) 305, 402, 434, 706, 977, 1235, 1570, 1685, 2018
Hpy8I GTNNAC 1 cut(s) 92
Hpy99I CGWCG 2 cut(s) 558, 1379
HpyCH4III ACNGT 7 cut(s) 136, 484, 884, 1493, 1592, 1982, 2135
HpyCH4IV ACGT 5 cut(s) 553, 861, 1239, 1773, 1784
HpyF3I CTNAG 2 cut(s) 1150, 1472
HpySE526I ACGT 5 cut(s) 553, 861, 1239, 1773, 1784
Hsp92I GRCGYC 8 cut(s) 101, 430, 553, 1239, 1374, 1380, 1596, 2045
HspAI GCGC 5 cut(s) 326, 356, 914, 1596, 2045
KasI GGCGCC 2 cut(s) 1595, 2044
KflI GGGWCCC 2 cut(s) 685, 1789
Kpn2I TCCGGA 1 cut(s) 705
Ksp22I TGATCA 5 cut(s) 645, 844, 1330, 1459, 2161
KspI CCGCGG 1 cut(s) 2301
LguI GCTCTTC 1 cut(s) 1772
LmnI GCTCC 6 cut(s) 259, 563, 819, 1258, 1810, 2287
LweI GCATC 8 cut(s) 427, 485, 561, 1655, 1661, 1667, 1673, 2293
MaeII ACGT 5 cut(s) 553, 861, 1239, 1773, 1784
MaeIII GTNAC 5 cut(s) 364, 802, 1909, 2071, 2372
MbiI CCGCTC 3 cut(s) 1476, 1673, 1813
MboII GAAGA 8 cut(s) 47, 513, 518, 1077, 1234, 1789, 1842, 2280
MflI RGATCY 3 cut(s) 334, 344, 715
MhlI GDGCHC 7 cut(s) 292, 592, 816, 1073, 1418, 1784, 2284
MluCI AATT 6 cut(s) 375, 777, 867, 1336, 1627, 2383
Mly113I GGCGCC 2 cut(s) 1596, 2045
MlyI GAGTC 3 cut(s) 288, 626, 955
MmeI TCCRAC 2 cut(s) 12, 2020
MroI TCCGGA 1 cut(s) 705
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 4 cut(s) 602, 2058, 2145, 2386
MslI CAYNNNNRTG 3 cut(s) 1772, 2004, 2226
MspA1I CMGCKG 7 cut(s) 549, 1259, 1796, 2051, 2300, 2318, 2327
MspI CCGG 9 cut(s) 513, 689, 706, 818, 1131, 1211, 1845, 2030, 2265
MspR9I CCNGG 8 cut(s) 689, 690, 818, 1186, 1412, 1700, 1846, 2031
MvaI CCWGG 3 cut(s) 1186, 1412, 1700
MvnI CGCG 1 cut(s) 2300
NarI GGCGCC 2 cut(s) 1596, 2045
NciI CCSGG 5 cut(s) 689, 690, 818, 1846, 2031
NmeAIII GCCGAG 4 cut(s) 421, 1206, 1350, 1619
NmuCI GTSAC 1 cut(s) 364
NsbI TGCGCA 1 cut(s) 915
NspI RCATGY 2 cut(s) 1471, 1740
OliI CACNNNNGTG 1 cut(s) 1772
PagI TCATGA 1 cut(s) 304
PaqCI CACCTGC 1 cut(s) 1487
PceI AGGCCT 2 cut(s) 172, 280
PciSI GCTCTTC 1 cut(s) 1772
PcsI WCGNNNNNNNCGW 1 cut(s) 1377
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 4 cut(s) 398, 656, 827, 1040
PflMI CCANNNNNTGG 1 cut(s) 1606
PleI GAGTC 3 cut(s) 288, 626, 955
PluTI GGCGCC 2 cut(s) 1599, 2048
PmaCI CACGTG 2 cut(s) 1774, 1785
PmlI CACGTG 2 cut(s) 1774, 1785
PpsI GAGTC 3 cut(s) 288, 626, 955
Ppu21I YACGTR 2 cut(s) 1774, 1785
PpuMI RGGWCCY 2 cut(s) 685, 1789
PshAI GACNNNNGTC 2 cut(s) 690, 1716
Psp124BI GAGCTC 1 cut(s) 816
Psp5II RGGWCCY 2 cut(s) 685, 1789
Psp6I CCWGG 3 cut(s) 1184, 1410, 1698
PspCI CACGTG 2 cut(s) 1774, 1785
PspFI CCCAGC 4 cut(s) 1118, 1545, 1792, 2353
PspGI CCWGG 3 cut(s) 1184, 1410, 1698
PspOMI GGGCCC 1 cut(s) 1414
PspPPI RGGWCCY 2 cut(s) 685, 1789
PstI CTGCAG 4 cut(s) 526, 1264, 1718, 2323
PstNI CAGNNNCTG 2 cut(s) 1043, 2318
PsuI RGATCY 3 cut(s) 334, 344, 715
PvuII CAGCTG 1 cut(s) 1259
RsaI GTAC 7 cut(s) 67, 91, 238, 520, 1984, 2040, 2254
RsaNI GTAC 7 cut(s) 66, 90, 237, 519, 1983, 2039, 2253
RseI CAYNNNNRTG 3 cut(s) 1772, 2004, 2226
SacI GAGCTC 1 cut(s) 816
SacII CCGCGG 1 cut(s) 2301
SapI GCTCTTC 1 cut(s) 1772
SaqAI TTAA 4 cut(s) 602, 2058, 2145, 2386
SchI GAGTC 3 cut(s) 288, 626, 955
ScrFI CCNGG 8 cut(s) 689, 690, 818, 1186, 1412, 1700, 1846, 2031
SduI GDGCHC 7 cut(s) 292, 592, 816, 1073, 1418, 1784, 2284
SfaNI GCATC 8 cut(s) 427, 485, 561, 1655, 1661, 1667, 1673, 2293
SfcI CTRYAG 4 cut(s) 522, 1260, 1714, 2319
SfoI GGCGCC 2 cut(s) 1597, 2046
Sfr303I CCGCGG 1 cut(s) 2301
SgrBI CCGCGG 1 cut(s) 2301
SinI GGWCC 3 cut(s) 685, 1133, 1789
SmaI CCCGGG 1 cut(s) 690
SmiMI CAYNNNNRTG 3 cut(s) 1772, 2004, 2226
SmlI CTYRAG 1 cut(s) 1568
SmoI CTYRAG 1 cut(s) 1568
SpeI ACTAGT 3 cut(s) 1880, 2249, 2336
Sse9I AATT 6 cut(s) 375, 777, 867, 1336, 1627, 2383
SseBI AGGCCT 2 cut(s) 172, 280
SspDI GGCGCC 2 cut(s) 1595, 2044
SspI AATATT 1 cut(s) 2209
SstI GAGCTC 1 cut(s) 816
StuI AGGCCT 2 cut(s) 172, 280
StyD4I CCNGG 8 cut(s) 687, 688, 816, 1184, 1410, 1698, 1844, 2029
StyI CCWWGG 3 cut(s) 281, 472, 838
TaaI ACNGT 7 cut(s) 136, 484, 884, 1493, 1592, 1982, 2135
TaiI ACGT 5 cut(s) 556, 864, 1242, 1776, 1787
TaqI TCGA 7 cut(s) 7, 403, 783, 810, 1234, 2068, 2292
TasI AATT 6 cut(s) 375, 777, 867, 1336, 1627, 2383
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 4 cut(s) 398, 656, 827, 1040
Tru1I TTAA 4 cut(s) 602, 2058, 2145, 2386
Tru9I TTAA 4 cut(s) 602, 2058, 2145, 2386
TscAI CASTG 1 cut(s) 1498
TseFI GTSAC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 3 cut(s) 165, 1358, 1448
TspGWI ACGGA 1 cut(s) 246
TspMI CCCGGG 1 cut(s) 688
TspRI CASTG 1 cut(s) 1498
Van91I CCANNNNNTGG 1 cut(s) 1606
VpaK11BI GGWCC 3 cut(s) 685, 1133, 1789
XagI CCTNNNNNAGG 1 cut(s) 837
XapI RAATTY 3 cut(s) 375, 867, 1627
XceI RCATGY 2 cut(s) 1471, 1740
XcmI CCANNNNNNNNNTGG 2 cut(s) 1408, 2003
XmaI CCCGGG 1 cut(s) 688
XmaJI CCTAGG 2 cut(s) 281, 838
XmnI GAANNNNTTC 1 cut(s) 164
ZraI GACGTC 2 cut(s) 554, 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.