Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000355.1

Orthogroup ID

OG0004536

Physical Location & Seq

Genomic Coordinates Forward (+)

63175 .. 64302

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgtacaccagaatgatgatgaattatgaggacgctccaatagaagatcgcaatcgtcacgaggccaaagacctctctatagaggaagtacaggagaaacttgaagctctcaagaaaaaattagatgatgggagctttagttggatttcacaagacaagtccaacgtgacctatggtgagtgcagcgatggcgtcaaacgtcttacattgaaggatatagataaacgatctaaaccaagagctgaaaaaagagaaaagatccgttcgatggttgatcttattctcgggttcttccaagcaaacaaggaaacacatcgtggggtgttttacgtagggaataataccgccagttcattgttcacacaagacgaggagtacgcaattcttaatgacatctgttgcactataggctgctgcagttcaagtctctacatagatgatgctagtgtaagaggcgttgttggaggtctgctttcgtgggtgcagaatgggtacgaaaccgattgtcgaagccgggatgatggggtggccatcccgtccatgcattcagatattagtttgaaaaattgtggagccaagttcgtattggtggtggaaaacaaagccagtttttataatctcatgcaatacaggttttaccgtgattatccatgcataatcatcaccggaatgggaaagcccggggtggcaaccagaagatttttaaagctattgtcggacaattttaggcttccagtgtatggccttttcgactgtgatccagcaagcatcgaaatgttttcgatttatactgttgggtcatatgaggaggccttccatagtgtaaacttaacttgcccgtatatgacatggttgggtgtttggccgagtgacctatgtgcgcttgacataccctgcgacgatatgagtccaaaagagattagagacatggataatcttttgaaagaagattttgtgaaagataatccgaggttggttgaggagctggaacatatgaaagcgacggagaaaaaagggaatcttgaagctttgaaggagtttgggcccacttgtttgtccaagtgctatttgccatataagtttaattatattttgaccgccgttcgccgtgacaagtgcaccaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

375

Amino Acids

42.89

Weight (kDa)

5.39

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	194 - 360	3.2e-46	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43731 FvH4_3g43753
rosa_chinensis	RchiOBHm_Chr2g0086091 RchiOBHm_Chr2g0089291 RchiOBHm_Chr2g0089851 RchiOBHm_Chr5g0083311
rosa_laevigata	RLG00000015741 RLG00000016061 RLG00000017209
rosa_multiflora	Rmu_co8293021.1_g000001 Rmu_co8360049.1_g000001 Rmu_sc0000388.1_g000047 Rmu_sc0002384.1_g000009 Rmu_sc0003382.1_g000021 Rmu_sc0017765.1_g000002 Rmu_ssc0000355.1_g000016
rosa_roxburghii	Rroxscaffold_2G00140180 Rroxscaffold_2G00151540
rosa_rugosa	Rorug01G0465600 Rorug01G0488800 Rorug02G0003700
rosa_samantha	Rh2AG015000 Rh2AG045100 Rh2AG048900 Rh2BG047800 Rh2CG016000 Rh2CG016100 Rh2CG045000 Rh2CG049900 Rh5BG561000 Rh5CG583600
rosa_wichuraiana	Rw2G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccB7I	CCANNNNNTGG	1 cut(s)	740
AciI	CCGC	2 cut(s)	345, 1098
AclWI	GGATC	2 cut(s)	253, 752
AcoI	YGGCCR	2 cut(s)	528, 863
AcyI	GRCGYC	1 cut(s)	192
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	4 cut(s)	5, 90, 377, 494
AfiI	CCNNNNNNNGG	2 cut(s)	268, 740
AgsI	TTSAA	7 cut(s)	104, 211, 423, 562, 943, 1025, 1033
AluBI	AGCT	6 cut(s)	107, 135, 242, 709, 985, 1028
AluI	AGCT	6 cut(s)	107, 135, 242, 709, 985, 1028
Alw21I	GWGCWC	1 cut(s)	1121
Alw26I	GTCTC	2 cut(s)	431, 918
Alw44I	GTGCAC	1 cut(s)	1117
AlwI	GGATC	2 cut(s)	253, 752
Ama87I	CYCGRG	2 cut(s)	284, 680
AoxI	GGCC	6 cut(s)	63, 528, 742, 810, 863, 1043
ApaI	GGGCCC	1 cut(s)	1047
ApaLI	GTGCAC	1 cut(s)	1117
ApeKI	GCWGC	3 cut(s)	183, 411, 414
AspLEI	GCGC	1 cut(s)	883
AspS9I	GGNCC	2 cut(s)	1043, 1044
AsuC2I	CCSGG	3 cut(s)	515, 681, 682
AsuHPI	GGTGA	2 cut(s)	188, 655
AvaI	CYCGRG	2 cut(s)	284, 680
BaeGI	GKGCMC	2 cut(s)	1047, 1121
BalI	TGGCCA	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	1047
BauI	CACGAG	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	1121
BbvI	GCAGC	3 cut(s)	195, 398, 401
BccI	CCATC	5 cut(s)	122, 182, 262, 515, 539
BceAI	ACGGC	2 cut(s)	1085, 1092
BcnI	CCSGG	3 cut(s)	515, 681, 682
BcoDI	GTCTC	2 cut(s)	431, 918
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	3 cut(s)	78, 405, 415
BisI	GCNGC	3 cut(s)	184, 412, 415
BlsI	GCNGC	3 cut(s)	185, 413, 416
Bme1390I	CCNGG	3 cut(s)	515, 681, 682
BmeT110I	CYCGRG	2 cut(s)	284, 680
BmgT120I	GGNCC	2 cut(s)	1043, 1044
BmiI	GGNNCC	2 cut(s)	574, 1045
BmrFI	CCNGG	3 cut(s)	515, 681, 682
BmsI	GCATC	2 cut(s)	430, 777
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	3 cut(s)	515, 681, 682
BsaAI	YACGTR	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	680, 681, 968
BsaWI	WCCGGW	1 cut(s)	665
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 740
Bse1I	ACTGG	3 cut(s)	348, 606, 734
Bse8I	GATNNNNATC	1 cut(s)	51
BseDI	CCNNGG	3 cut(s)	680, 681, 968
BseGI	GGATG	2 cut(s)	523, 531
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	268, 740
BseNI	ACTGG	3 cut(s)	348, 606, 734
BseRI	GAGGAG	3 cut(s)	386, 821, 995
BseSI	GKGCMC	2 cut(s)	1047, 1121
BseXI	GCAGC	3 cut(s)	195, 398, 401
BsgI	GTGCAG	2 cut(s)	202, 503
BshFI	GGCC	6 cut(s)	65, 530, 744, 812, 865, 1045
BsiHKAI	GWGCWC	1 cut(s)	1121
BsiHKCI	CYCGRG	2 cut(s)	284, 680
BsiSI	CCGG	3 cut(s)	514, 666, 681
BslI	CCNNNNNNNGG	2 cut(s)	268, 740
BsmAI	GTCTC	2 cut(s)	431, 918
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	6 cut(s)	65, 530, 744, 812, 865, 1045
BsoBI	CYCGRG	2 cut(s)	284, 680
Bsp120I	GGGCCC	1 cut(s)	1043
Bsp1286I	GDGCHC	2 cut(s)	1047, 1121
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	46, 227, 258, 274, 757
BspACI	CCGC	2 cut(s)	345, 1098
BspANI	GGCC	6 cut(s)	65, 530, 744, 812, 865, 1045
BspLI	GGNNCC	2 cut(s)	574, 1045
BspMAI	CTGCAG	1 cut(s)	419
BspPI	GGATC	2 cut(s)	253, 752
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	348, 606, 734
BssECI	CCNNGG	3 cut(s)	680, 681, 968
BssMI	GATC	5 cut(s)	46, 227, 258, 274, 757
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	59
Bst4CI	ACNGT	3 cut(s)	641, 755, 793
BstACI	GRCGYC	1 cut(s)	192
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	766
BstF5I	GGATG	2 cut(s)	523, 531
BstHHI	GCGC	1 cut(s)	883
BstKTI	GATC	5 cut(s)	49, 230, 261, 277, 760
BstMAI	GTCTC	2 cut(s)	431, 918
BstMBI	GATC	5 cut(s)	46, 227, 258, 274, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 408
BstSCI	CCNGG	3 cut(s)	513, 679, 680
BstSFI	CTRYAG	3 cut(s)	78, 405, 415
BstSLI	GKGCMC	2 cut(s)	1047, 1121
BstSNI	TACGTA	1 cut(s)	331
BstV1I	GCAGC	3 cut(s)	195, 398, 401
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	6 cut(s)	65, 530, 744, 812, 865, 1045
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	523, 531
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	1 cut(s)	766
CfoI	GCGC	1 cut(s)	883
Cfr13I	GGNCC	2 cut(s)	1043, 1044
Cfr9I	CCCGGG	1 cut(s)	680
CseI	GACGC	2 cut(s)	41, 181
Csp6I	GTAC	4 cut(s)	4, 89, 376, 493
CviAII	CATG	5 cut(s)	541, 622, 651, 849, 928
CviQI	GTAC	4 cut(s)	4, 89, 376, 493
DpnI	GATC	5 cut(s)	48, 229, 260, 276, 759
DpnII	GATC	5 cut(s)	46, 227, 258, 274, 757
DraI	TTTAAA	1 cut(s)	705
DraIII	CACNNNGTG	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	528, 863
Eco105I	TACGTA	1 cut(s)	331
Eco147I	AGGCCT	1 cut(s)	812
Eco24I	GRGCYC	1 cut(s)	1047
Eco88I	CYCGRG	2 cut(s)	284, 680
EcoT22I	ATGCAT	2 cut(s)	546, 656
EcoT38I	GRGCYC	1 cut(s)	1047
FaeI	CATG	5 cut(s)	544, 625, 654, 852, 931
FalI	AAGNNNNNCTT	2 cut(s)	1005, 1037
FatI	CATG	5 cut(s)	540, 621, 650, 848, 927
FauNDI	CATATG	2 cut(s)	802, 993
Fnu4HI	GCNGC	3 cut(s)	184, 412, 415
FokI	GGATG	2 cut(s)	518, 530
FriOI	GRGCYC	1 cut(s)	1047
Fsp4HI	GCNGC	3 cut(s)	184, 412, 415
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	882
GluI	GCNGC	3 cut(s)	184, 412, 415
HaeIII	GGCC	6 cut(s)	65, 530, 744, 812, 865, 1045
HapII	CCGG	3 cut(s)	514, 666, 681
HgaI	GACGC	2 cut(s)	41, 181
HhaI	GCGC	1 cut(s)	883
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	5 cut(s)	544, 625, 654, 852, 931
Hin6I	GCGC	1 cut(s)	881
HinP1I	GCGC	1 cut(s)	881
HindIII	AAGCTT	1 cut(s)	1026
HinfI	GANTC	2 cut(s)	907, 1018
HpaII	CCGG	3 cut(s)	514, 666, 681
HphI	GGTGA	2 cut(s)	188, 655
Hpy166II	GTNNAC	4 cut(s)	6, 360, 826, 1119
Hpy188I	TCNGA	3 cut(s)	550, 718, 969
Hpy188III	TCNNGA	3 cut(s)	59, 112, 1022
Hpy8I	GTNNAC	4 cut(s)	6, 360, 826, 1119
Hpy99I	CGWCG	2 cut(s)	902, 1006
HpyAV	CCTTC	3 cut(s)	205, 823, 1027
HpyCH4III	ACNGT	3 cut(s)	641, 755, 793
HpyCH4IV	ACGT	3 cut(s)	165, 199, 330
HpyCH4V	TGCA	8 cut(s)	183, 402, 417, 484, 544, 625, 654, 1119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 408
HpySE526I	ACGT	3 cut(s)	165, 199, 330
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	5 cut(s)	544, 625, 654, 852, 931
HspAI	GCGC	1 cut(s)	881
Kzo9I	GATC	5 cut(s)	46, 227, 258, 274, 757
LmnI	GCTCC	4 cut(s)	40, 132, 572, 982
Lsp1109I	GCAGC	3 cut(s)	195, 398, 401
LweI	GCATC	2 cut(s)	430, 777
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	3 cut(s)	165, 199, 330
MaeIII	GTNAC	4 cut(s)	56, 166, 869, 1109
MalI	GATC	5 cut(s)	48, 229, 260, 276, 759
MboI	GATC	5 cut(s)	46, 227, 258, 274, 757
MboII	GAAGA	4 cut(s)	56, 283, 708, 959
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	1047, 1121
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	7 cut(s)	22, 119, 381, 565, 721, 1084, 1123
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	916
MmeI	TCCRAC	4 cut(s)	122, 186, 442, 696
Mox20I	TGGCCA	1 cut(s)	530
Mph1103I	ATGCAT	2 cut(s)	546, 656
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	5 cut(s)	387, 704, 830, 1083, 1126
MslI	CAYNNNNRTG	3 cut(s)	11, 668, 773
Msp20I	TGGCCA	1 cut(s)	530
MspI	CCGG	3 cut(s)	514, 666, 681
MspR9I	CCNGG	3 cut(s)	515, 681, 682
Mva1269I	GAATGC	1 cut(s)	544
MwoI	GCNNNNNNNGC	2 cut(s)	189, 408
NciI	CCSGG	3 cut(s)	515, 681, 682
NdeI	CATATG	2 cut(s)	802, 993
NdeII	GATC	5 cut(s)	46, 227, 258, 274, 757
NlaIII	CATG	5 cut(s)	544, 625, 654, 852, 931
NlaIV	GGNNCC	2 cut(s)	574, 1045
NmeAIII	GCCGAG	1 cut(s)	891
NmuCI	GTSAC	4 cut(s)	56, 166, 869, 1109
NsiI	ATGCAT	2 cut(s)	546, 656
PceI	AGGCCT	1 cut(s)	812
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	1018
PflMI	CCANNNNNTGG	1 cut(s)	740
PkrI	GCNGC	3 cut(s)	185, 413, 416
PleI	GAGTC	1 cut(s)	915
PpsI	GAGTC	1 cut(s)	915
Ppu21I	YACGTR	1 cut(s)	331
PsiI	TTATAA	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	574, 1045
PspOMI	GGGCCC	1 cut(s)	1043
PspPI	GGNCC	2 cut(s)	1043, 1044
PstI	CTGCAG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	4 cut(s)	5, 90, 377, 494
RsaNI	GTAC	4 cut(s)	4, 89, 376, 493
RseI	CAYNNNNRTG	3 cut(s)	11, 668, 773
SaqAI	TTAA	5 cut(s)	387, 704, 830, 1083, 1126
SatI	GCNGC	3 cut(s)	184, 412, 415
Sau3AI	GATC	5 cut(s)	46, 227, 258, 274, 757
Sau96I	GGNCC	2 cut(s)	1043, 1044
SchI	GAGTC	1 cut(s)	916
ScrFI	CCNGG	3 cut(s)	515, 681, 682
SduI	GDGCHC	2 cut(s)	1047, 1121
SfaNI	GCATC	2 cut(s)	430, 777
SfcI	CTRYAG	3 cut(s)	78, 405, 415
SmaI	CCCGGG	1 cut(s)	682
SmiMI	CAYNNNNRTG	3 cut(s)	11, 668, 773
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SnaBI	TACGTA	1 cut(s)	331
Sse9I	AATT	7 cut(s)	22, 119, 381, 565, 721, 1084, 1123
SseBI	AGGCCT	1 cut(s)	812
SsiI	CCGC	2 cut(s)	345, 1098
SspMI	CTAG	1 cut(s)	444
StuI	AGGCCT	1 cut(s)	812
StyD4I	CCNGG	3 cut(s)	513, 679, 680
TaaI	ACNGT	3 cut(s)	641, 755, 793
TaiI	ACGT	3 cut(s)	168, 202, 333
TaqI	TCGA	5 cut(s)	266, 508, 750, 771, 782
TasI	AATT	7 cut(s)	22, 119, 381, 565, 721, 1084, 1123
TatI	WGTACW	2 cut(s)	3, 88
TfiI	GAWTC	1 cut(s)	1018
Tru1I	TTAA	5 cut(s)	387, 704, 830, 1083, 1126
Tru9I	TTAA	5 cut(s)	387, 704, 830, 1083, 1126
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	4 cut(s)	56, 166, 869, 1109
TseI	GCWGC	3 cut(s)	183, 411, 414
Tsp45I	GTSAC	4 cut(s)	56, 166, 869, 1109
TspDTI	ATGAA	3 cut(s)	35, 342, 1010
TspGWI	ACGGA	2 cut(s)	251, 1019
TspMI	CCCGGG	1 cut(s)	680
TspRI	CASTG	1 cut(s)	741
Van91I	CCANNNNNTGG	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	1117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XmaI	CCCGGG	1 cut(s)	680
XspI	CTAG	1 cut(s)	444
Zsp2I	ATGCAT	2 cut(s)	546, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.