Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000391.1

Orthogroup ID

OG0012686

Physical Location & Seq

Genomic Coordinates Forward (+)

25146 .. 26548

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgcaggctgacattgtcaaggaggaagccctctttgttgaggagagaaagagatgggtggcggataaccgggatctctatactgacatgaatcagttttttgtcaaaagatgtcaatgggaaactgattttaaggaaatccacttaaagcctctttatgaaaagagatgtattgctgctaaaggagtccctgccttttggcttactgcaatgattgctaacaagatactttataagcagattgcagagagagatacaaaggctttgtactttctgaatgatatcgagtctagtaggacaattgatttgaaaggatttgagctgaagttcacctttgacgatcataatccttattttaagaataaagtcttaactaaaaagtatgaggtgattgatgacaacgagtctgtttcgttgaaggcaattgggactaaaatagactggtatccttctaaaaaattgacgcagcagagtggtaaaagcagtgaaagtttctttaagttctttagttcatatgctactgtcgatcctctttcttttgacaaagaagctgatgaactcaaaggcgaccttccgacggattatttaattggtaccaagtttcgggacaagatcattccgcatgctatatcctggcatgcattttcagaagacgatgatagtgactttggagatgacagtgatgaagaatgtgagcgttgctcaaggtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

237

Amino Acids

27.87

Weight (kDa)

5.11

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	53 - 213	2.6e-35	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012686)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087421 RchiOBHm_Chr3g0447701
rosa_laevigata	RLG00000015865 RLG00000025977
rosa_multiflora	Rmu_ssc0000391.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153550 Rroxscaffold_6G00425880 Rroxscaffold_6G00425900
rosa_rugosa	Rorug01G0475300 Rorug02G0604700
rosa_samantha	Rh2BG028900 Rh2DG028700 Rh3AG004300 Rh3AG004500 Rh3BG003900 Rh3CG004400 Rh3DG004300
rosa_wichuraiana	Rw2G002280 Rw3G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
Acc65I	GGTACC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	593
AciI	CCGC	2 cut(s)	62, 620
AclWI	GGATC	2 cut(s)	81, 521
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	2 cut(s)	269, 595
AfiI	CCNNNNNNNGG	2 cut(s)	577, 603
AgsI	TTSAA	2 cut(s)	310, 418
AhdI	GACNNNNNGTC	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	632
AluBI	AGCT	2 cut(s)	322, 551
AluI	AGCT	2 cut(s)	322, 551
AlwI	GGATC	2 cut(s)	81, 521
ApeKI	GCWGC	2 cut(s)	176, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
Asp718I	GGTACC	1 cut(s)	593
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	322, 400
BanI	GGYRCC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	657
BbvI	GCAGC	2 cut(s)	163, 478
BccI	CCATC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	634
BciVI	GTATCC	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	71
BfaI	CTAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	2 cut(s)	177, 467
BlsI	GCNGC	2 cut(s)	178, 468
Bme1390I	CCNGG	2 cut(s)	71, 634
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	2 cut(s)	71, 634
BpiI	GAAGAC	1 cut(s)	657
BplI	GAGNNNNNCTC	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	688
BpuMI	CCSGG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	2 cut(s)	577, 603
Bse1I	ACTGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	634
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	577, 603
BseMI	GCAATG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	163, 478
BshNI	GGYRCC	1 cut(s)	593
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	3 cut(s)	173, 442, 620
BslI	CCNNNNNNNGG	2 cut(s)	577, 603
BsmFI	GGGAC	3 cut(s)	173, 442, 620
Bsp143I	GATC	4 cut(s)	73, 340, 526, 612
BspACI	CCGC	2 cut(s)	62, 620
BspLI	GGNNCC	1 cut(s)	595
BspPI	GGATC	2 cut(s)	81, 521
BspT107I	GGYRCC	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	446
BssMI	GATC	4 cut(s)	73, 340, 526, 612
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	2 cut(s)	523, 680
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstC8I	GCNNGC	3 cut(s)	6, 624, 639
BstKTI	GATC	4 cut(s)	76, 343, 529, 615
BstMBI	GATC	4 cut(s)	73, 340, 526, 612
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	634
BstNSI	RCATGY	2 cut(s)	626, 641
BstSCI	CCNGG	2 cut(s)	69, 632
BstV1I	GCAGC	2 cut(s)	163, 478
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	456
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	490, 685
Cac8I	GCNNGC	3 cut(s)	6, 624, 639
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	268, 594
CviAII	CATG	3 cut(s)	88, 623, 638
CviJI	RGCY	7 cut(s)	8, 29, 151, 202, 263, 322, 551
CviKI_1	RGCY	7 cut(s)	8, 29, 151, 202, 263, 322, 551
CviQI	GTAC	2 cut(s)	268, 594
DpnI	GATC	4 cut(s)	75, 342, 528, 614
DpnII	GATC	4 cut(s)	73, 340, 526, 612
DriI	GACNNNNNGTC	1 cut(s)	403
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EciI	GGCGGA	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	632
EcoRV	GATATC	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	643
FaeI	CATG	3 cut(s)	91, 626, 641
FalI	AAGNNNNNCTT	4 cut(s)	317, 349, 555, 587
FaqI	GGGAC	3 cut(s)	173, 442, 620
FatI	CATG	3 cut(s)	87, 622, 637
FauNDI	CATATG	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	177, 467
Fsp4HI	GCNGC	2 cut(s)	177, 467
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	2 cut(s)	177, 467
HapII	CCGG	1 cut(s)	70
HgaI	GACGC	1 cut(s)	472
Hin1II	CATG	3 cut(s)	91, 626, 641
HinfI	GANTC	4 cut(s)	91, 186, 287, 404
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	2 cut(s)	322, 400
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	276, 576, 649
Hpy188III	TCNNGA	1 cut(s)	605
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	580
HpyAV	CCTTC	3 cut(s)	412, 459, 581
HpyCH4III	ACNGT	2 cut(s)	523, 680
HpyCH4V	TGCA	4 cut(s)	4, 209, 245, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	91, 626, 641
KpnI	GGTACC	1 cut(s)	597
Kzo9I	GATC	4 cut(s)	73, 340, 526, 612
LpnPI	CCDG	5 cut(s)	83, 204, 427, 619, 646
Lsp1109I	GCAGC	2 cut(s)	163, 478
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	4 cut(s)	75, 342, 528, 614
MboI	GATC	4 cut(s)	73, 340, 526, 612
MboII	GAAGA	2 cut(s)	662, 698
MfeI	CAATTG	2 cut(s)	300, 423
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	4 cut(s)	300, 423, 458, 588
MlyI	GAGTC	3 cut(s)	195, 296, 413
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	6 cut(s)	16, 34, 41, 162, 379, 540
Mph1103I	ATGCAT	1 cut(s)	643
MseI	TTAA	6 cut(s)	132, 146, 357, 371, 498, 587
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	71, 634
MunI	CAATTG	2 cut(s)	300, 423
MvaI	CCWGG	1 cut(s)	634
MwoI	GCNNNNNNNGC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	71
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	4 cut(s)	73, 340, 526, 612
NlaIII	CATG	3 cut(s)	91, 626, 641
NlaIV	GGNNCC	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	662
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	2 cut(s)	626, 641
PaeI	GCATGC	2 cut(s)	626, 641
PfeI	GAWTC	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	178, 468
PleI	GAGTC	3 cut(s)	194, 295, 412
PpsI	GAGTC	3 cut(s)	194, 295, 412
PsiI	TTATAA	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	632
PspN4I	GGNNCC	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	14
RsaI	GTAC	2 cut(s)	269, 595
RsaNI	GTAC	2 cut(s)	268, 594
SaqAI	TTAA	6 cut(s)	132, 146, 357, 371, 498, 587
SatI	GCNGC	2 cut(s)	177, 467
Sau3AI	GATC	4 cut(s)	73, 340, 526, 612
SchI	GAGTC	3 cut(s)	195, 296, 413
ScrFI	CCNGG	2 cut(s)	71, 634
SetI	ASST	6 cut(s)	324, 335, 390, 553, 573, 710
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
SphI	GCATGC	2 cut(s)	626, 641
Sse9I	AATT	4 cut(s)	300, 423, 458, 588
SsiI	CCGC	2 cut(s)	62, 620
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	69, 632
TaaI	ACNGT	2 cut(s)	523, 680
TaqI	TCGA	2 cut(s)	285, 525
TasI	AATT	4 cut(s)	300, 423, 458, 588
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	6 cut(s)	132, 146, 357, 371, 498, 587
Tru9I	TTAA	6 cut(s)	132, 146, 357, 371, 498, 587
TscAI	CASTG	2 cut(s)	490, 685
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	2 cut(s)	176, 466
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	5 cut(s)	104, 174, 501, 570, 699
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	2 cut(s)	490, 685
Tth111I	GACNNNGTC	1 cut(s)	14
XceI	RCATGY	2 cut(s)	626, 641
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.