Rmu_ssc0000422.1_g000026
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000422.1
OG0006309
Physical Location & Seq
Reverse (-)
132787 .. 133927
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 897 bp
atggctgtgccggagcaacaggtggcaccgccacaggagaatgtagtcggtagtggaggaggttttgaggcaacaacctcatcttcgaggtggcccaaggcggaagttcttgcactgataaagctgaggagcggactggagactaggtatcaagaggctgggccgaaaggcccactttgggaggagatttccgcagggatgcagcgaatggggtacaagaggaatcccaagaggtgcaaagagaaatgggagaacatcaacaagtacttcaagaaagtgaaggagagcaacaaggccaggcctgaagatgcgaaaacgtgtccttattttcacgaacttgatgcactctaccggaagagggtactcggcggtggtggaagcagcagctcattgggtaatcagaatatccaacaacagccaccggctactcaagggacagtagcagcttctgtgcctgcaccacaaacacaaggaacagtagcagctactgatcaatcaggaaacaagaatggcgatcatagcccaaatctgcaaaagaatctctttggagatgcacctgaagaggcagccaagaagccagaagacattgtgaaggagttgatggggcaacagcaacagcaacaacaacatcatcatcatccacaacaactactcaaccaacaaggggtggagcagcaattagtagtagaagactatgatagagttgaggaagctgacagcgacatcaatctcgatcaagatgaggaggaagacgaagatgacgaagaggatgaagaaatggatgaggagagcaggaagatggattataagattgagtttcagaagcaacagaatacaggcccttcatctaatgggggaggcaatggggcaccctccttcttggcaatggttcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006275 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008156 GO:0008361 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010026 GO:0010035 GO:0010090 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0030308 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031668 GO:0032502 GO:0032535 GO:0032774 GO:0032875 GO:0032876 GO:0032989 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0040008 GO:0042221 GO:0042631 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045786 GO:0045892 GO:0045926 GO:0045934 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0097159 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000037 GO:2000038 GO:2000104 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

298

Amino Acids

33.08

Weight (kDa)

4.86

Isoelectric Point (pI)

71.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 29 - 116 2.9e-26 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 807
AccB1I GGYRCC 2 cut(s) 25, 868
AccBSI CCGCTC 1 cut(s) 132
AciI CCGC 5 cut(s) 29, 101, 132, 192, 369
AcuI CTGAAG 2 cut(s) 324, 579
AfaI GTAC 3 cut(s) 215, 266, 363
AfiI CCNNNNNNNGG 3 cut(s) 178, 358, 664
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 2 cut(s) 271, 893
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 5 cut(s) 124, 387, 446, 485, 713
AluI AGCT 5 cut(s) 124, 387, 446, 485, 713
Alw26I GTCTC 1 cut(s) 134
AlwNI CAGNNNCTG 2 cut(s) 449, 488
AoxI GGCC 6 cut(s) 92, 161, 169, 294, 299, 838
ApeKI GCWGC 7 cut(s) 202, 381, 384, 443, 482, 566, 673
AspS9I GGNCC 4 cut(s) 93, 161, 170, 839
BaeGI GKGCMC 1 cut(s) 871
BanI GGYRCC 2 cut(s) 25, 868
BbsI GAAGAC 3 cut(s) 588, 696, 756
BbvCI CCTCAGC 1 cut(s) 125
BbvI GCAGC 7 cut(s) 214, 393, 396, 455, 494, 578, 685
BccI CCATC 2 cut(s) 595, 793
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 1 cut(s) 298
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 144
BisI GCNGC 7 cut(s) 203, 382, 385, 444, 483, 567, 674
BlsI GCNGC 7 cut(s) 204, 383, 386, 445, 484, 568, 675
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 298
BmgT120I GGNCC 4 cut(s) 93, 161, 170, 839
BmiI GGNNCC 2 cut(s) 27, 870
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 4 cut(s) 189, 298, 331, 541
BpiI GAAGAC 3 cut(s) 588, 696, 756
BpmI CTGGAG 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 358, 664
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 2 cut(s) 868, 891
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 4 cut(s) 204, 637, 775, 787
BseLI CCNNNNNNNGG 3 cut(s) 178, 358, 664
BseMI GCAATG 2 cut(s) 868, 891
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 5 cut(s) 72, 142, 197, 758, 800
BseSI GKGCMC 1 cut(s) 871
BseXI GCAGC 7 cut(s) 214, 393, 396, 455, 494, 578, 685
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 6 cut(s) 94, 163, 171, 296, 301, 840
BshNI GGYRCC 2 cut(s) 25, 868
BsiSI CCGG 3 cut(s) 11, 352, 422
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 3 cut(s) 178, 358, 664
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 6 cut(s) 94, 163, 171, 296, 301, 840
Bsp1286I GDGCHC 1 cut(s) 871
Bsp143I GATC 3 cut(s) 490, 514, 733
BspACI CCGC 5 cut(s) 29, 101, 132, 192, 369
BspANI GGCC 6 cut(s) 94, 163, 171, 296, 301, 840
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 27, 870
BspT107I GGYRCC 2 cut(s) 25, 868
BsrBI CCGCTC 1 cut(s) 132
BsrDI GCAATG 2 cut(s) 868, 891
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 490, 514, 733
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 439, 478
Bst6I CTCTTC 3 cut(s) 350, 555, 759
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 4 cut(s) 204, 637, 775, 787
BstKTI GATC 3 cut(s) 493, 517, 736
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 490, 514, 733
BstMWI GCNNNNNNNGC 1 cut(s) 519
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 871
BstV1I GCAGC 7 cut(s) 214, 393, 396, 455, 494, 578, 685
BstV2I GAAGAC 3 cut(s) 588, 696, 756
BsuRI GGCC 6 cut(s) 94, 163, 171, 296, 301, 840
BtsCI GGATG 4 cut(s) 204, 637, 775, 787
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 456
CaiI CAGNNNCTG 2 cut(s) 449, 488
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 4 cut(s) 93, 161, 170, 839
Csp6I GTAC 3 cut(s) 214, 265, 362
CviQI GTAC 3 cut(s) 214, 265, 362
DdeI CTNAG 1 cut(s) 125
DpnI GATC 3 cut(s) 492, 516, 735
DpnII GATC 3 cut(s) 490, 514, 733
Eam1104I CTCTTC 3 cut(s) 350, 555, 759
EarI CTCTTC 3 cut(s) 350, 555, 759
EciI GGCGGA 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 324, 579
EcoO109I RGGNCCY 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaiI YATR 3 cut(s) 519, 696, 807
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 527, 559
FaqI GGGAC 1 cut(s) 448
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 7 cut(s) 203, 382, 385, 444, 483, 567, 674
FokI GGATG 4 cut(s) 211, 624, 782, 794
Fsp4HI GCNGC 7 cut(s) 203, 382, 385, 444, 483, 567, 674
FspBI CTAG 1 cut(s) 144
GluI GCNGC 7 cut(s) 203, 382, 385, 444, 483, 567, 674
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 6 cut(s) 94, 163, 171, 296, 301, 840
HapII CCGG 3 cut(s) 11, 352, 422
HinfI GANTC 2 cut(s) 223, 538
HpaII CCGG 3 cut(s) 11, 352, 422
Hpy188I TCNGA 2 cut(s) 402, 822
Hpy188III TCNNGA 6 cut(s) 152, 271, 332, 498, 731, 737
HpyAV CCTTC 4 cut(s) 274, 586, 852, 886
HpyCH4III ACNGT 2 cut(s) 439, 478
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 7 cut(s) 113, 202, 237, 344, 458, 532, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 519
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 3 cut(s) 490, 514, 733
LmnI GCTCC 3 cut(s) 13, 129, 670
Lsp1109I GCAGC 7 cut(s) 214, 393, 396, 455, 494, 578, 685
LweI GCATC 4 cut(s) 189, 298, 331, 541
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 317
MalI GATC 3 cut(s) 492, 516, 735
MbiI CCGCTC 1 cut(s) 132
MboI GATC 3 cut(s) 490, 514, 733
MhlI GDGCHC 1 cut(s) 871
MluCI AATT 1 cut(s) 677
MmeI TCCRAC 1 cut(s) 433
MspI CCGG 3 cut(s) 11, 352, 422
MspR9I CCNGG 1 cut(s) 298
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 1 cut(s) 519
NdeII GATC 3 cut(s) 490, 514, 733
NlaIV GGNNCC 2 cut(s) 27, 870
NmeAIII GCCGAG 1 cut(s) 345
PceI AGGCCT 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 759
PfeI GAWTC 2 cut(s) 223, 538
PkrI GCNGC 7 cut(s) 204, 383, 386, 445, 484, 568, 675
PsiI TTATAA 1 cut(s) 807
Psp6I CCWGG 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 27, 870
PspPI GGNCC 4 cut(s) 93, 161, 170, 839
PstNI CAGNNNCTG 2 cut(s) 449, 488
RsaI GTAC 3 cut(s) 215, 266, 363
RsaNI GTAC 3 cut(s) 214, 265, 362
SatI GCNGC 7 cut(s) 203, 382, 385, 444, 483, 567, 674
Sau3AI GATC 3 cut(s) 490, 514, 733
Sau96I GGNCC 4 cut(s) 93, 161, 170, 839
ScaI AGTACT 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 1 cut(s) 871
SfaNI GCATC 4 cut(s) 189, 298, 331, 541
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 1 cut(s) 677
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 5 cut(s) 29, 101, 132, 192, 369
SspMI CTAG 1 cut(s) 144
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 439, 478
TaiI ACGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 86, 732
TasI AATT 1 cut(s) 677
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 2 cut(s) 223, 538
TscAI CASTG 1 cut(s) 120
TseI GCWGC 7 cut(s) 202, 381, 384, 443, 482, 566, 673
TspDTI ATGAA 2 cut(s) 786, 834
TspRI CASTG 1 cut(s) 120
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.