Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008402

Physical Location & Seq

Genomic Coordinates Reverse (-)

6904343 .. 6909689

Gene Structure 5347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGAACACTCACCGCCCGGTGAGGGCGCTCTCACGTGCCCTGTCACGTGCTCTATCTCAGTCCTCCTCCTCTTCCTCCTCCGCCGCCGCACAACCCTCCTTCCCTCTGAAAAACGTGACCAAATCGAACTTCGAGCCGGTTCTCGCCGAGCTCCGCGGCCACGTCGCCGCAGCCGACTTCGTGGCCGTCGACCTCGAAATGAGCGGAGTCACCAGCGCGCCGTGGCGGGACTCCTTGGAGTTCGACCGCTCTGACGTCAGCTACCTCAAGGTCAAGGACTCGGCGGAGAAGTTCGCCGTGCTTCAGTTCGGCGTTTGCCCCTTTCGCTGGGACTCCTCCAAGAAATCCTTCATTGCTCATCCGCACAATTTCTATATTTTTGCACGTCAAGAGCTTCCTGTCGAAAGCCCCACTTATGAGTTTCTCTGCCAGACTACATCAATTGACTTCTTAGCTAAATACCAGTTCGATTTCAATATGTGTATACATGAAGGAATATCTTATTTATCTAGAGGGCAGGAAAATGAAGCACTGAGACGTTTTCATTTGGCATATGAGGATGGATCTAAGTTGAAAGAAGTAAGGGATGCCCCTTTGGTTAAGATGGCTGACACTCTCTTCACTGAACGGATGAAGAATACATTTACTGAGTGGCGTGATGGGTTGTTGAGAAATAAAAATGGAGGGTTCCAATGTCAGGGAATCTCAAATGACCGCCAGCAACATTTAGAAACCATTTTTTTCAAGATGCGTCCTGCTCTTAGTCTAAATGGATTTACATCTCATCAGCTTAAATTGATTCAACTGGTCATTAGAAGGCATTTCCAAGATCTTTCTTATGTTCAGGTAAATGGGGAAAATTCATGTCAACAGCAACTAGTTGTGCGTACAGATTCGAAGGATGACAGGGAGTCACTTATGAAAGAGGTGAAGGATGAGCATCTTAGACAAGCAGAGACCAAGGTTCAAGCTGCGGTGGGGTTTCGTCATGTTATTGACCTTCTTTCCTCAGAAAAAAAGCTGATTGTTGGTCACAATTGCTTTCTGGATATTGCACATATATACAGCAAATTTGTAGGTCCTCTTCCTTCAACTGCTGAAGAATTTGTATCTTCTGTTAACAAGTGTTTTCCGCACATCCTTGACACCAAAGTACTCTTGAATGCTAATATTGGGCTTCAACAACGGATGAAGAAATCCCAAACATCACTCTCGTCAGCATTTGCATCATTATGTCCACAAATTTCACTGGGGGCGAAAAGCACTGATCTGGCATTCCAATTGTGTGTCAAAGTTGAGGTTCAGGTTGATGATTTGAGGTCCTCCAACTGGAATTCTGGAGCCAAACATGAAGCTGGATATGATGCTTTTATGACAGGATGTGTCTTTGCTCAGGCCTGCAGTCATCTAGGTATTGATTTTGAAGCATGTTTGCCCTCTGAAAAGTTGGCCCACAATGAAAAGCTCCAGAAGCACATCAACCTTCTATTCCTTAGTTGGAGTAAAGGAGATGTTATTGATTTAACAACTGGAAATAAGAATGCGATGTCTGTGGGATCTAAGAACAACAAAAAACGTTACTTGCAGATTTCATATGAGAAAATTGCTTTAATATGGGGATTTTCATCCAAGCTCAAGGCACGAGAGATAAGAGAATGCATCTCCAAAGTCTTTGGCCTGACGTCAGTTGTATCTATCTATCACTTGGATGAAACTGCAGTGTTCGTTCAGTTTAACAAGGAGAAATTGGTCTCTGAGTTTCTCAGTTTGAAGGACACTTTAGAGAGAAAAGATGGTCCTGTCTCGGTTTTGCATCCTCTTGCAGGACTTTTGGAAGGTGGAAATACCCGAGCGGCTGATTATGAAACTTACAAAGAAATTTGTAGTTCACCCAACGCAAAAGTCTTGTTTGCAGATCAGGCAGAGGCATTTGGTATCCAATGGAAAACCAAGTTGGTCGAAGCTAAGGCATCGTTGTGCCTAGATTGTGAGAGTTCAGGTGAAAAAAATGCTTTGAATCCTGCTTCTAAGTCCGATGAAAAATCTGGAAGAAAGAACATGGAAAATGTGCAGAGTGATTCATCTACTGCATGTGTCTCAAACTATAAGATTATAGATTCTTTGATTGCTTCTAGAGGCGATAAGGTCAGAACTCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

720

Amino Acids

80.63

Weight (kDa)

8.4

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	39 - 463	1.3e-101	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55870 AT1G55870 AT1G55870 AT1G55870
fragaria_vesca	FvH4_3g42970 FvH4_3g42970
malus_domestica	MD03G1026800.v1.1 MD11G1030900.v1.1
prunus_persica	Prupe.6G024200_v2.0.a1 Prupe.6G024200_v2.0.a1 Prupe.6G024200_v2.0.a1 Prupe.6G024200_v2.0.a1
pyrus_communis	pycom03g02190 pycom11g02610
rosa_chinensis	RchiOBHm_Chr5g0077021
rosa_laevigata	RLG00000036642
rosa_roxburghii	Rroxscaffold_1G00005120
rosa_rugosa	Rorug05G0450400
rosa_samantha	Rh5AG505000 Rh5BG526700 Rh5CG550500 Rh5DG538900
rosa_wichuraiana	Rw5G047140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	258, 1685
AccBSI	CCGCTC	3 cut(s)	204, 249, 1853
AccI	GTMKAC	2 cut(s)	189, 484
AccII	CGCG	2 cut(s)	156, 218
AclI	AACGTT	1 cut(s)	1576
AclWI	GGATC	2 cut(s)	571, 1564
AcoI	YGGCCR	2 cut(s)	157, 183
AcsI	RAATTY	6 cut(s)	859, 1070, 1103, 1242, 1333, 1878
AcuI	CTGAAG	2 cut(s)	287, 1119
AcvI	CACGTG	2 cut(s)	35, 47
AcyI	GRCGYC	2 cut(s)	255, 1682
AfaI	GTAC	2 cut(s)	889, 1155
AfiI	CCNNNNNNNGG	5 cut(s)	22, 327, 697, 1329, 1823
AhdI	GACNNNNNGTC	1 cut(s)	910
AhlI	ACTAGT	1 cut(s)	877
AjiI	CACGTC	2 cut(s)	163, 386
AjuI	GAANNNNNNNTTGG	6 cut(s)	113, 145, 332, 364, 1937, 1969
Alw21I	GWGCWC	2 cut(s)	52, 153
Alw26I	GTCTC	5 cut(s)	529, 950, 1756, 1807, 2101
AlwI	GGATC	2 cut(s)	571, 1564
Ama87I	CYCGRG	1 cut(s)	1848
AoxI	GGCC	5 cut(s)	157, 183, 1395, 1449, 1675
ApeKI	GCWGC	2 cut(s)	170, 971
ApoI	RAATTY	6 cut(s)	859, 1070, 1103, 1242, 1333, 1878
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	3 cut(s)	28, 218, 220
AspS9I	GGNCC	4 cut(s)	1079, 1320, 1450, 1796
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	5 cut(s)	31, 202, 940, 1881, 2012
AsuII	TTCGAA	1 cut(s)	896
AvaI	CYCGRG	1 cut(s)	1848
AvaII	GGWCC	3 cut(s)	1079, 1320, 1796
BaeGI	GKGCMC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	153
BarI	GAAGNNNNNNTAC	2 cut(s)	1068, 1100
BauI	CACGAG	1 cut(s)	1641
BbrPI	CACGTG	2 cut(s)	35, 47
Bbv12I	GWGCWC	2 cut(s)	52, 153
BbvI	GCAGC	2 cut(s)	182, 958
BccI	CCATC	4 cut(s)	554, 598, 653, 1787
BceAI	ACGGC	3 cut(s)	170, 205, 281
BciVI	GTATCC	1 cut(s)	1946
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	5 cut(s)	529, 950, 1756, 1807, 2101
BcuI	ACTAGT	1 cut(s)	877
BfaI	CTAG	5 cut(s)	510, 878, 1409, 1982, 2133
BfmI	CTRYAG	2 cut(s)	1399, 1716
BfoI	RGCGCY	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	1946
BglII	AGATCT	1 cut(s)	829
BisI	GCNGC	7 cut(s)	84, 87, 157, 168, 171, 972, 1854
BlsI	GCNGC	7 cut(s)	85, 88, 158, 169, 172, 973, 1855
BmcAI	AGTACT	1 cut(s)	1155
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	3 cut(s)	1079, 1320, 1796
BmeRI	GACNNNNNGTC	1 cut(s)	910
BmeT110I	CYCGRG	1 cut(s)	1848
BmgBI	CACGTC	2 cut(s)	163, 386
BmgT120I	GGNCC	4 cut(s)	1079, 1320, 1450, 1796
BmiI	GGNNCC	2 cut(s)	689, 1342
BmrFI	CCNGG	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	1259
BmsI	GCATC	8 cut(s)	577, 738, 949, 1235, 1354, 1668, 1822, 1979
BmuI	ACTGGG	1 cut(s)	1259
BpmI	CTGGAG	2 cut(s)	1359, 1451
Bpu10I	CCTNAGC	2 cut(s)	1392, 1965
Bpu14I	TTCGAA	1 cut(s)	896
BpuEI	CTTGAG	2 cut(s)	251, 1619
BpuMI	CCSGG	1 cut(s)	17
BsaAI	YACGTR	2 cut(s)	35, 47
BsaBI	GATNNNNATC	3 cut(s)	778, 939, 1624
BsaHI	GRCGYC	2 cut(s)	255, 1682
BsaI	GGTCTC	2 cut(s)	950, 1756
BsaJI	CCNNGG	4 cut(s)	154, 221, 234, 960
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 327, 697, 1329, 1823
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	5 cut(s)	463, 810, 1254, 1334, 1534
Bse3DI	GCAATG	1 cut(s)	351
Bse8I	GATNNNNATC	3 cut(s)	778, 939, 1624
BseDI	CCNNGG	4 cut(s)	154, 221, 234, 960
BseJI	GATNNNNATC	3 cut(s)	778, 939, 1624
BseLI	CCNNNNNNNGG	5 cut(s)	22, 327, 697, 1329, 1823
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	7 cut(s)	71, 524, 639, 1023, 1406, 1746, 1777
BseNI	ACTGG	5 cut(s)	463, 810, 1254, 1334, 1534
BsePI	GCGCGC	1 cut(s)	216
BseRI	GAGGAG	4 cut(s)	55, 58, 67, 325
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	182, 958
BseYI	CCCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	2090
Bsh1236I	CGCG	2 cut(s)	156, 218
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	5 cut(s)	159, 185, 1397, 1451, 1677
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	52, 153
BsiHKCI	CYCGRG	1 cut(s)	1848
BsiSI	CCGG	2 cut(s)	17, 137
BslFI	GGGAC	2 cut(s)	242, 344
BslI	CCNNNNNNNGG	5 cut(s)	22, 327, 697, 1329, 1823
BsmAI	GTCTC	5 cut(s)	529, 950, 1756, 1807, 2101
BsmBI	CGTCTC	1 cut(s)	529
BsmFI	GGGAC	2 cut(s)	242, 344
BsmI	GAATGC	4 cut(s)	1168, 1274, 1546, 1661
BsnI	GGCC	5 cut(s)	159, 185, 1397, 1451, 1677
Bso31I	GGTCTC	2 cut(s)	950, 1756
BsoBI	CYCGRG	1 cut(s)	1848
Bsp119I	TTCGAA	1 cut(s)	896
Bsp1286I	GDGCHC	3 cut(s)	40, 52, 153
Bsp143I	GATC	5 cut(s)	563, 829, 1267, 1556, 1915
BspANI	GGCC	5 cut(s)	159, 185, 1397, 1451, 1677
BspCNI	CTCAG	7 cut(s)	70, 525, 640, 1022, 1405, 1747, 1776
BspFNI	CGCG	2 cut(s)	156, 218
BspLI	GGNNCC	2 cut(s)	689, 1342
BspMAI	CTGCAG	2 cut(s)	1403, 1720
BspPI	GGATC	2 cut(s)	571, 1564
BspT104I	TTCGAA	1 cut(s)	896
BspTNI	GGTCTC	2 cut(s)	950, 1756
BsrBI	CCGCTC	3 cut(s)	204, 249, 1853
BsrDI	GCAATG	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	5 cut(s)	463, 810, 1254, 1334, 1534
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	4 cut(s)	154, 221, 234, 960
BssHII	GCGCGC	1 cut(s)	216
BssMI	GATC	5 cut(s)	563, 829, 1267, 1556, 1915
BssNAI	GTATAC	1 cut(s)	485
BssNI	GRCGYC	2 cut(s)	255, 1682
BssSI	CACGAG	1 cut(s)	1641
BssT1I	CCWWGG	2 cut(s)	234, 960
Bst1107I	GTATAC	1 cut(s)	485
Bst2BI	CACGAG	1 cut(s)	1641
Bst6I	CTCTTC	3 cut(s)	76, 623, 1089
BstACI	GRCGYC	2 cut(s)	255, 1682
BstBAI	YACGTR	2 cut(s)	35, 47
BstBI	TTCGAA	1 cut(s)	896
BstC8I	GCNNGC	3 cut(s)	218, 719, 1399
BstDSI	CCRYGG	2 cut(s)	154, 221
BstENI	CCTNNNNNAGG	1 cut(s)	1821
BstFNI	CGCG	2 cut(s)	156, 218
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	3 cut(s)	28, 218, 220
BstKTI	GATC	5 cut(s)	566, 832, 1270, 1559, 1918
BstMAI	GTCTC	5 cut(s)	529, 950, 1756, 1807, 2101
BstMBI	GATC	5 cut(s)	563, 829, 1267, 1556, 1915
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	324, 1471, 1919
BstNSI	RCATGY	2 cut(s)	1431, 2094
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	2 cut(s)	1399, 1716
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	2 cut(s)	156, 218
BstV1I	GCAGC	2 cut(s)	182, 958
BstX2I	RGATCY	3 cut(s)	563, 829, 1556
BstYI	RGATCY	3 cut(s)	563, 829, 1556
BstZ17I	GTATAC	1 cut(s)	485
BsuI	GTATCC	1 cut(s)	1946
BsuRI	GGCC	5 cut(s)	159, 185, 1397, 1451, 1677
BtgI	CCRYGG	2 cut(s)	154, 221
BtgZI	GCGATG	1 cut(s)	1559
BtrI	CACGTC	2 cut(s)	163, 386
BtsI	GCAGTG	1 cut(s)	1725
BtsIMutI	CAGTG	5 cut(s)	530, 621, 1247, 1263, 1725
Cac8I	GCNNGC	3 cut(s)	218, 719, 1399
CfoI	GCGC	3 cut(s)	28, 218, 220
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	4 cut(s)	1079, 1320, 1450, 1796
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	1 cut(s)	740
Csp6I	GTAC	2 cut(s)	888, 1154
CviAII	CATG	7 cut(s)	488, 864, 989, 1349, 1428, 2059, 2091
CviQI	GTAC	2 cut(s)	888, 1154
DpnI	GATC	5 cut(s)	565, 831, 1269, 1558, 1917
DpnII	GATC	5 cut(s)	563, 829, 1267, 1556, 1915
DriI	GACNNNNNGTC	1 cut(s)	910
EaeI	YGGCCR	2 cut(s)	157, 183
Eam1104I	CTCTTC	3 cut(s)	76, 623, 1089
Eam1105I	GACNNNNNGTC	1 cut(s)	910
EarI	CTCTTC	3 cut(s)	76, 623, 1089
EciI	GGCGGA	2 cut(s)	70, 299
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	234, 960
Eco147I	AGGCCT	1 cut(s)	1397
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	2 cut(s)	950, 1756
Eco47I	GGWCC	3 cut(s)	1079, 1320, 1796
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	287, 1119
Eco72I	CACGTG	2 cut(s)	35, 47
Eco88I	CYCGRG	1 cut(s)	1848
EcoICRI	GAGCTC	1 cut(s)	151
EcoNI	CCTNNNNNAGG	1 cut(s)	1821
EcoO109I	RGGNCCY	2 cut(s)	1079, 1320
EcoRI	GAATTC	1 cut(s)	1333
EcoT14I	CCWWGG	2 cut(s)	234, 960
EcoT22I	ATGCAT	1 cut(s)	1661
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	2 cut(s)	234, 960
Esp3I	CGTCTC	1 cut(s)	529
FaeI	CATG	7 cut(s)	491, 867, 992, 1352, 1431, 2062, 2094
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 397, 429
FaqI	GGGAC	2 cut(s)	242, 344
FatI	CATG	7 cut(s)	487, 863, 988, 1348, 1427, 2058, 2090
FauI	CCCGC	1 cut(s)	219
FauNDI	CATATG	2 cut(s)	553, 1594
FblI	GTMKAC	2 cut(s)	189, 484
Fnu4HI	GCNGC	7 cut(s)	84, 87, 157, 168, 171, 972, 1854
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	7 cut(s)	84, 87, 157, 168, 171, 972, 1854
FspBI	CTAG	5 cut(s)	510, 878, 1409, 1982, 2133
GlaI	GCGC	3 cut(s)	27, 217, 219
GluI	GCNGC	7 cut(s)	84, 87, 157, 168, 171, 972, 1854
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	2 cut(s)	1359, 1451
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	5 cut(s)	159, 185, 1397, 1451, 1677
HapII	CCGG	2 cut(s)	17, 137
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	3 cut(s)	28, 218, 220
Hin1I	GRCGYC	2 cut(s)	255, 1682
Hin1II	CATG	7 cut(s)	491, 867, 992, 1352, 1431, 2062, 2094
Hin6I	GCGC	3 cut(s)	26, 216, 218
HinP1I	GCGC	3 cut(s)	26, 216, 218
HincII	GTYRAC	3 cut(s)	190, 869, 1120
HindII	GTYRAC	3 cut(s)	190, 869, 1120
HpaI	GTTAAC	1 cut(s)	1120
HpaII	CCGG	2 cut(s)	17, 137
HphI	GGTGA	5 cut(s)	31, 202, 940, 1881, 2012
Hpy166II	GTNNAC	6 cut(s)	190, 485, 869, 1120, 1238, 1889
Hpy188I	TCNGA	7 cut(s)	108, 253, 1012, 1441, 1756, 2035, 2150
Hpy188III	TCNNGA	9 cut(s)	389, 510, 745, 1046, 1159, 1338, 1468, 2046, 2133
Hpy8I	GTNNAC	6 cut(s)	190, 485, 869, 1120, 1238, 1889
Hpy99I	CGWCG	2 cut(s)	167, 191
HpyCH4IV	ACGT	9 cut(s)	34, 46, 114, 162, 255, 385, 538, 1576, 1682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	324, 1471, 1919
HpySE526I	ACGT	9 cut(s)	34, 46, 114, 162, 255, 385, 538, 1576, 1682
Hsp92I	GRCGYC	2 cut(s)	255, 1682
Hsp92II	CATG	7 cut(s)	491, 867, 992, 1352, 1431, 2062, 2094
HspAI	GCGC	3 cut(s)	26, 216, 218
KspAI	GTTAAC	1 cut(s)	1120
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	563, 829, 1267, 1556, 1915
LmnI	GCTCC	3 cut(s)	156, 1340, 1470
Lsp1109I	GCAGC	2 cut(s)	182, 958
LweI	GCATC	8 cut(s)	577, 738, 949, 1235, 1354, 1668, 1822, 1979
MaeI	CTAG	5 cut(s)	510, 878, 1409, 1982, 2133
MaeII	ACGT	9 cut(s)	34, 46, 114, 162, 255, 385, 538, 1576, 1682
MaeIII	GTNAC	6 cut(s)	42, 115, 208, 912, 1031, 1577
MalI	GATC	5 cut(s)	565, 831, 1269, 1558, 1917
MbiI	CCGCTC	3 cut(s)	204, 249, 1853
MboI	GATC	5 cut(s)	563, 829, 1267, 1556, 1915
MboII	GAAGA	8 cut(s)	63, 610, 646, 1076, 1104, 1112, 1204, 2061
MfeI	CAATTG	3 cut(s)	441, 1036, 1280
MflI	RGATCY	3 cut(s)	563, 829, 1556
MhlI	GDGCHC	3 cut(s)	40, 52, 153
MlyI	GAGTC	5 cut(s)	216, 224, 272, 326, 920
MmeI	TCCRAC	2 cut(s)	1350, 1478
Mph1103I	ATGCAT	1 cut(s)	1661
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	6 cut(s)	600, 792, 1119, 1523, 1610, 1734
MslI	CAYNNNNRTG	3 cut(s)	1231, 1707, 1975
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	2 cut(s)	17, 137
MspR9I	CCNGG	1 cut(s)	17
MunI	CAATTG	3 cut(s)	441, 1036, 1280
Mva1269I	GAATGC	4 cut(s)	1168, 1274, 1546, 1661
MvnI	CGCG	2 cut(s)	156, 218
MwoI	GCNNNNNNNGC	3 cut(s)	324, 1471, 1919
NciI	CCSGG	1 cut(s)	17
NdeI	CATATG	2 cut(s)	553, 1594
NdeII	GATC	5 cut(s)	563, 829, 1267, 1556, 1915
NlaIII	CATG	7 cut(s)	491, 867, 992, 1352, 1431, 2062, 2094
NlaIV	GGNNCC	2 cut(s)	689, 1342
NmeAIII	GCCGAG	2 cut(s)	172, 260
NmuCI	GTSAC	5 cut(s)	42, 115, 208, 912, 1031
NsiI	ATGCAT	1 cut(s)	1661
NspI	RCATGY	2 cut(s)	1431, 2094
NspV	TTCGAA	1 cut(s)	896
PauI	GCGCGC	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	1397
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 186
PctI	GAATGC	4 cut(s)	1168, 1274, 1546, 1661
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	6 cut(s)	702, 799, 893, 2017, 2078, 2117
PkrI	GCNGC	7 cut(s)	85, 88, 158, 169, 172, 973, 1855
PleI	GAGTC	5 cut(s)	215, 224, 272, 326, 919
PmaCI	CACGTG	2 cut(s)	35, 47
PmlI	CACGTG	2 cut(s)	35, 47
PpsI	GAGTC	5 cut(s)	215, 224, 272, 326, 919
Ppu21I	YACGTR	2 cut(s)	35, 47
PpuMI	RGGWCCY	2 cut(s)	1079, 1320
Psp124BI	GAGCTC	1 cut(s)	153
Psp1406I	AACGTT	1 cut(s)	1576
Psp5II	RGGWCCY	2 cut(s)	1079, 1320
PspCI	CACGTG	2 cut(s)	35, 47
PspFI	CCCAGC	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	689, 1342
PspPI	GGNCC	4 cut(s)	1079, 1320, 1450, 1796
PspPPI	RGGWCCY	2 cut(s)	1079, 1320
PstI	CTGCAG	2 cut(s)	1403, 1720
PsuI	RGATCY	3 cut(s)	563, 829, 1556
PteI	GCGCGC	1 cut(s)	216
RsaI	GTAC	2 cut(s)	889, 1155
RsaNI	GTAC	2 cut(s)	888, 1154
RseI	CAYNNNNRTG	3 cut(s)	1231, 1707, 1975
SacI	GAGCTC	1 cut(s)	153
SacII	CCGCGG	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	6 cut(s)	600, 792, 1119, 1523, 1610, 1734
SatI	GCNGC	7 cut(s)	84, 87, 157, 168, 171, 972, 1854
Sau3AI	GATC	5 cut(s)	563, 829, 1267, 1556, 1915
Sau96I	GGNCC	4 cut(s)	1079, 1320, 1450, 1796
ScaI	AGTACT	1 cut(s)	1155
SchI	GAGTC	5 cut(s)	216, 224, 272, 326, 920
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	3 cut(s)	40, 52, 153
SfaNI	GCATC	8 cut(s)	577, 738, 949, 1235, 1354, 1668, 1822, 1979
SfcI	CTRYAG	2 cut(s)	1399, 1716
Sfr303I	CCGCGG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	896
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	3 cut(s)	1079, 1320, 1796
SmiMI	CAYNNNNRTG	3 cut(s)	1231, 1707, 1975
SmlI	CTYRAG	2 cut(s)	266, 1634
SmoI	CTYRAG	2 cut(s)	266, 1634
SpeI	ACTAGT	1 cut(s)	877
SseBI	AGGCCT	1 cut(s)	1397
SspI	AATATT	1 cut(s)	1171
SspMI	CTAG	5 cut(s)	510, 878, 1409, 1982, 2133
SstI	GAGCTC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	1397
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	234, 960
TaiI	ACGT	9 cut(s)	37, 49, 117, 165, 258, 388, 541, 1579, 1685
TaqI	TCGA	9 cut(s)	125, 132, 189, 195, 243, 402, 468, 896, 1959
TatI	WGTACW	1 cut(s)	1153
TauI	GCSGC	5 cut(s)	86, 89, 159, 170, 1856
TfiI	GAWTC	6 cut(s)	702, 799, 893, 2017, 2078, 2117
Tru1I	TTAA	6 cut(s)	600, 792, 1119, 1523, 1610, 1734
Tru9I	TTAA	6 cut(s)	600, 792, 1119, 1523, 1610, 1734
TscAI	CASTG	5 cut(s)	537, 628, 1254, 1270, 1725
TseFI	GTSAC	5 cut(s)	42, 115, 208, 912, 1031
TseI	GCWGC	2 cut(s)	170, 971
Tsp45I	GTSAC	5 cut(s)	42, 115, 208, 912, 1031
TspGWI	ACGGA	2 cut(s)	643, 1201
TspRI	CASTG	5 cut(s)	537, 628, 1254, 1270, 1725
VpaK11BI	GGWCC	3 cut(s)	1079, 1320, 1796
XagI	CCTNNNNNAGG	1 cut(s)	1821
XapI	RAATTY	6 cut(s)	859, 1070, 1103, 1242, 1333, 1878
XbaI	TCTAGA	2 cut(s)	509, 2132
XceI	RCATGY	2 cut(s)	1431, 2094
XmiI	GTMKAC	2 cut(s)	189, 484
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	5 cut(s)	510, 878, 1409, 1982, 2133
ZraI	GACGTC	2 cut(s)	256, 1683
ZrmI	AGTACT	1 cut(s)	1155
Zsp2I	ATGCAT	1 cut(s)	1661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.