Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008402

Physical Location & Seq

Genomic Coordinates Forward (+)

62368136 .. 62368939

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0450400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAAAAGAGGCAGAGAAGATGAGCAGACCATGGACTTGGTTGGTTGCTTGATGCTGCTATCCAAAGTTGGCCAAAATGATTCGTCCCCAATCAAAAAACAAAAGACCTCTGACCGTGCCTTTGTTTGCAAGACATGTAATCGCGAGTTCTCATCGTTCCAAGCCCTCGGAGGCCACAGAGCGAGCCATAACAAGCCGAAACTAATGGCCAGCGGAGCCACAGACCTTTTACAGCTTGCTCAGTTGGCGCCTATCTCACCGGCAAAGCCCAAGACCCACGAGTGCCCTGTCTGTGGGCTTGAATTCGCAATCGGGCAAGCGCTTGGAGGACACATGAGGAGACATAGGGACGTTATGAATTCTGCTTCTGCCGATCGAGTTCGGGCAGCAGCCGTGCCGGTGTTGAAGAAATCCAATAGTAGCAAAAGGGTGTCGTGCTTGAATCTGGATTTGAATTTGGCACCACCCGGATATCAACATCACTACGATTTAACGAAGTTGCAGTTGATTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

171

Amino Acids

18.75

Weight (kDa)

9.66

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	40 - 65	1.1e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	93 - 117	1.1e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55870 AT1G55870 AT1G55870 AT1G55870
fragaria_vesca	FvH4_3g42970 FvH4_3g42970
malus_domestica	MD03G1026800.v1.1 MD11G1030900.v1.1
prunus_persica	Prupe.6G024200_v2.0.a1 Prupe.6G024200_v2.0.a1 Prupe.6G024200_v2.0.a1 Prupe.6G024200_v2.0.a1
pyrus_communis	pycom03g02190 pycom11g02610
rosa_chinensis	RchiOBHm_Chr5g0077021
rosa_laevigata	RLG00000036642
rosa_roxburghii	Rroxscaffold_1G00005120
rosa_rugosa	Rorug05G0450400
rosa_samantha	Rh5AG505000 Rh5BG526700 Rh5CG550500 Rh5DG538900
rosa_wichuraiana	Rw5G047140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	247, 460
AccII	CGCG	1 cut(s)	144
AciI	CCGC	1 cut(s)	213
AcoI	YGGCCR	2 cut(s)	70, 207
AcsI	RAATTY	3 cut(s)	302, 358, 454
AcyI	GRCGYC	1 cut(s)	248
AfeI	AGCGCT	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	302, 406, 442, 454
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	334
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	3 cut(s)	70, 172, 207
ApeKI	GCWGC	3 cut(s)	55, 386, 389
ApoI	RAATTY	3 cut(s)	302, 358, 454
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	2 cut(s)	250, 322
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	287
BalI	TGGCCA	2 cut(s)	72, 209
BanI	GGYRCC	2 cut(s)	247, 460
BauI	CACGAG	1 cut(s)	278
BbvI	GCAGC	3 cut(s)	42, 398, 401
BceAI	ACGGC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	334
BfoI	RGCGCY	2 cut(s)	251, 323
BisI	GCNGC	3 cut(s)	56, 387, 390
BlsI	GCNGC	3 cut(s)	57, 388, 391
Bme1390I	CCNGG	1 cut(s)	468
BmiI	GGNNCC	3 cut(s)	217, 249, 462
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	30, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	2 cut(s)	259, 397
BseDI	CCNNGG	2 cut(s)	30, 166
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	3 cut(s)	42, 398, 401
Bsh1236I	CGCG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	3 cut(s)	72, 174, 209
BshNI	GGYRCC	2 cut(s)	247, 460
BsiEI	CGRYCG	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	260, 398, 468
BslFI	GGGAC	2 cut(s)	70, 362
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	70, 362
BsnI	GGCC	3 cut(s)	72, 174, 209
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	30
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	3 cut(s)	72, 174, 209
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	3 cut(s)	217, 249, 462
BspT107I	GGYRCC	2 cut(s)	247, 460
BsrFI	RCCGGY	2 cut(s)	259, 397
BssAI	RCCGGY	2 cut(s)	259, 397
BssECI	CCNNGG	2 cut(s)	30, 166
BssMI	GATC	1 cut(s)	373
BssNI	GRCGYC	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	248
BstC8I	GCNNGC	4 cut(s)	184, 211, 237, 318
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	2 cut(s)	251, 323
BstHHI	GCGC	2 cut(s)	250, 322
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	373
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 245
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	287
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	42, 398, 401
BstXI	CCANNNNNNTGG	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	72, 174, 209
BtgI	CCRYGG	1 cut(s)	30
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	4 cut(s)	184, 211, 237, 318
CfoI	GCGC	2 cut(s)	250, 322
Cfr10I	RCCGGY	2 cut(s)	259, 397
CviAII	CATG	3 cut(s)	31, 135, 334
DdeI	CTNAG	1 cut(s)	240
DinI	GGCGCC	1 cut(s)	249
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	70, 207
Eco130I	CCWWGG	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	473
Eco47III	AGCGCT	1 cut(s)	321
EcoRI	GAATTC	2 cut(s)	302, 358
EcoRV	GATATC	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	249
EheI	GGCGCC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	3 cut(s)	34, 138, 337
FaiI	YATR	6 cut(s)	32, 136, 189, 335, 345, 356
FaqI	GGGAC	2 cut(s)	70, 362
FatI	CATG	3 cut(s)	30, 134, 333
Fnu4HI	GCNGC	3 cut(s)	56, 387, 390
Fsp4HI	GCNGC	3 cut(s)	56, 387, 390
GlaI	GCGC	2 cut(s)	249, 321
GluI	GCNGC	3 cut(s)	56, 387, 390
HaeII	RGCGCY	2 cut(s)	251, 323
HaeIII	GGCC	3 cut(s)	72, 174, 209
HapII	CCGG	3 cut(s)	260, 398, 468
HhaI	GCGC	2 cut(s)	250, 322
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	34, 138, 337
Hin6I	GCGC	2 cut(s)	248, 320
HinP1I	GCGC	2 cut(s)	248, 320
HinfI	GANTC	2 cut(s)	80, 442
HpaII	CCGG	3 cut(s)	260, 398, 468
HphI	GGTGA	1 cut(s)	249
Hpy188I	TCNGA	2 cut(s)	112, 170
Hpy188III	TCNNGA	2 cut(s)	143, 446
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	129, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 245
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	34, 138, 337
HspAI	GCGC	2 cut(s)	248, 320
KasI	GGCGCC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	6 cut(s)	223, 273, 300, 411, 431, 481
Lsp1109I	GCAGC	3 cut(s)	42, 398, 401
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	1 cut(s)	351
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	2 cut(s)	29, 418
MhlI	GDGCHC	1 cut(s)	287
MlsI	TGGCCA	2 cut(s)	72, 209
MluCI	AATT	3 cut(s)	302, 358, 454
MluNI	TGGCCA	2 cut(s)	72, 209
Mly113I	GGCGCC	1 cut(s)	248
MnlI	CCTC	5 cut(s)	118, 164, 176, 320, 330
Mox20I	TGGCCA	2 cut(s)	72, 209
MscI	TGGCCA	2 cut(s)	72, 209
MseI	TTAA	2 cut(s)	491, 514
Msp20I	TGGCCA	2 cut(s)	72, 209
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	3 cut(s)	260, 398, 468
MspR9I	CCNGG	1 cut(s)	468
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	215, 245
NarI	GGCGCC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	468
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	34, 138, 337
NlaIV	GGNNCC	3 cut(s)	217, 249, 462
NruI	TCGCGA	1 cut(s)	144
NspI	RCATGY	1 cut(s)	138
PciI	ACATGT	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	80, 442
PkrI	GCNGC	3 cut(s)	57, 388, 391
Ple19I	CGATCG	1 cut(s)	376
PluTI	GGCGCC	1 cut(s)	251
PscI	ACATGT	1 cut(s)	134
PspN4I	GGNNCC	3 cut(s)	217, 249, 462
PvuI	CGATCG	1 cut(s)	376
RruI	TCGCGA	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	491, 514
SatI	GCNGC	3 cut(s)	56, 387, 390
Sau3AI	GATC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	4 cut(s)	110, 228, 237, 354
SfaNI	GCATC	1 cut(s)	42
SfoI	GGCGCC	1 cut(s)	249
Sse9I	AATT	3 cut(s)	302, 358, 454
SsiI	CCGC	1 cut(s)	213
SspDI	GGCGCC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	466
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	376
TasI	AATT	3 cut(s)	302, 358, 454
TfiI	GAWTC	2 cut(s)	80, 442
Tru1I	TTAA	2 cut(s)	491, 514
Tru9I	TTAA	2 cut(s)	491, 514
TseI	GCWGC	3 cut(s)	55, 386, 389
TspDTI	ATGAA	2 cut(s)	17, 371
XapI	RAATTY	3 cut(s)	302, 358, 454
XceI	RCATGY	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.