Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012705

Physical Location & Seq

Genomic Coordinates Reverse (-)

18835625 .. 18852444

Gene Structure 16820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTCTGTTTCACCTGTACAGTTAGTTTGCACCAAGACTTGGAACCCACCGCTTCCTCTTCTCTTAGTTTGAGTTTCTCCCGCATCATTCAACAGCAAAACCTCTCAAATCTTTCTCCAGCCATCGATGTCAACCCTCGAAAGATTATGTTGGGACTGTTCAATCTATTAAGATTGCATGTTTTGCTACCTCTTGTGCAGAACTCCTGTATAACTCCTTACTTGGAAGCTGAAAGTGCATGCATTCAAAATATGCAGGATATATCGCAGCTAAAGTATGGCAGTGCTTCTAATTTGAGCAATACATATATTGAAATGCTTGAAGATTGTGATAGATTGGACAATGAATCTGTTGTGCATATTGGGTCAACCTCTTATGAAGTGATAAATCCTTTCATGTTAAACAGAATCACCAGTACCACTTCTCTTGAGGAAAAGAGAGGAGACAATCTGTGGGTTCTCTTAAAGCATCAGCTTAAGAGCAGAGCATGGGATGCTCCGCAGTGTGGGACACTCCGACCCGAGCCTAGGAGGCTCCTTTCCTTGTATGAAGGGCAAAGGAGGCTTGGTGAAAAAGAAAAGGAGAGGAGAGAGGGCAAAGAAAGACGGGACGACAAGGATTTTAACCACGATGGCGAAGGGACTTCAACATGTAGCGTTTTCCACACAAATGGAAATCCACTCGTAGAAGTGAAGACGTACTTAGCTGCTGACCAATTGCATCAAGGTGGGGAAGACAATGAAAGCCTGGGTGAACATCTCATTTCATCTTCTCATGACGATAAAAATTCTGCAAAAACGAGTCAAGCTCCAACCGGTGAGTTGACTCGTCCCGTACTCCTCGAAACCGGTCTCGTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

287

Amino Acids

32.26

Weight (kDa)

5.52

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012705)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0025378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015130 Rroxscaffold_3G00265680 Rroxscaffold_5G00352540
rosa_rugosa	Rorug03G0071900 Rorug03G0072000
rosa_samantha	Rh1AG000200 Rh1AG207500 Rh1CG192300 Rh4AG243600 Rh4BG248500 Rh4BG248600 Rh5AG178200 Rh5AG456300 Rh6CG011200 Rh6CG320600 Rh6DG012500 Rh6DG305900 Rh7DG283100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AciI	CCGC	4 cut(s)	51, 82, 500, 859
AcsI	RAATTY	1 cut(s)	787
AfaI	GTAC	4 cut(s)	19, 418, 701, 837
AfiI	CCNNNNNNNGG	3 cut(s)	40, 506, 528
AflII	CTTAAG	1 cut(s)	476
AflIII	ACRYGT	1 cut(s)	650
AgeI	ACCGGT	2 cut(s)	815, 848
AgsI	TTSAA	6 cut(s)	92, 163, 248, 314, 323, 648
AjnI	CCWGG	1 cut(s)	747
AluBI	AGCT	5 cut(s)	230, 271, 475, 707, 809
AluI	AGCT	5 cut(s)	230, 271, 475, 707, 809
Alw26I	GTCTC	2 cut(s)	438, 857
Ama87I	CYCGRG	1 cut(s)	521
ApeKI	GCWGC	2 cut(s)	268, 707
ApoI	RAATTY	1 cut(s)	787
AsiGI	ACCGGT	2 cut(s)	815, 848
AspA2I	CCTAGG	1 cut(s)	527
AsuHPI	GGTGA	5 cut(s)	4, 403, 581, 764, 830
AvaI	CYCGRG	1 cut(s)	521
AvrII	CCTAGG	1 cut(s)	527
BauI	CACGAG	1 cut(s)	854
BbsI	GAAGAC	2 cut(s)	701, 741
BbvI	GCAGC	2 cut(s)	280, 694
BccI	CCATC	2 cut(s)	131, 626
BciT130I	CCWGG	1 cut(s)	749
BcoDI	GTCTC	2 cut(s)	438, 857
BfaI	CTAG	1 cut(s)	528
BfrI	CTTAAG	1 cut(s)	476
BglI	GCCNNNNNGGC	1 cut(s)	532
BisI	GCNGC	2 cut(s)	269, 708
BlnI	CCTAGG	1 cut(s)	527
BlsI	GCNGC	2 cut(s)	270, 709
Bme1390I	CCNGG	1 cut(s)	749
BmeT110I	CYCGRG	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	45, 536
BmrFI	CCNGG	1 cut(s)	749
BmsI	GCATC	4 cut(s)	93, 478, 484, 730
BpiI	GAAGAC	2 cut(s)	701, 741
BplI	GAGNNNNNCTC	2 cut(s)	793, 825
BpmI	CTGGAG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	449
Bsa29I	ATCGAT	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	857
BsaJI	CCNNGG	2 cut(s)	527, 748
BsaWI	WCCGGW	2 cut(s)	815, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 506, 528
Bse118I	RCCGGY	2 cut(s)	815, 848
Bse1I	ACTGG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	749
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	527, 748
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	3 cut(s)	40, 506, 528
BseNI	ACTGG	1 cut(s)	414
BseRI	GAGGAG	3 cut(s)	456, 601, 830
BseXI	GCAGC	2 cut(s)	280, 694
BsgI	GTGCAG	1 cut(s)	218
BshTI	ACCGGT	2 cut(s)	815, 848
BshVI	ATCGAT	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	2 cut(s)	816, 849
BslFI	GGGAC	5 cut(s)	168, 523, 623, 655, 816
BslI	CCNNNNNNNGG	3 cut(s)	40, 506, 528
BsmAI	GTCTC	2 cut(s)	438, 857
BsmFI	GGGAC	5 cut(s)	168, 523, 623, 655, 816
BsmI	GAATGC	1 cut(s)	243
Bso31I	GGTCTC	1 cut(s)	857
BsoBI	CYCGRG	1 cut(s)	521
Bsp1407I	TGTACA	1 cut(s)	17
BspACI	CCGC	4 cut(s)	51, 82, 500, 859
BspDI	ATCGAT	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	2 cut(s)	45, 536
BspTI	CTTAAG	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	857
BsrFI	RCCGGY	2 cut(s)	815, 848
BsrGI	TGTACA	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	414
BssAI	RCCGGY	2 cut(s)	815, 848
BssECI	CCNNGG	2 cut(s)	527, 748
BssSI	CACGAG	1 cut(s)	854
BssT1I	CCWWGG	1 cut(s)	527
Bst2BI	CACGAG	1 cut(s)	854
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	2 cut(s)	22, 159
Bst6I	CTCTTC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	476
BstAPI	GCANNNNNTGC	2 cut(s)	184, 494
BstAUI	TGTACA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	65, 703
BstF5I	GGATG	1 cut(s)	499
BstMAI	GTCTC	2 cut(s)	438, 857
BstMWI	GCNNNNNNNGC	5 cut(s)	184, 236, 494, 532, 562
BstNI	CCWGG	1 cut(s)	749
BstNSI	RCATGY	3 cut(s)	182, 243, 654
BstSCI	CCNGG	1 cut(s)	747
BstV1I	GCAGC	2 cut(s)	280, 694
BstV2I	GAAGAC	2 cut(s)	701, 741
BstXI	CCANNNNNNTGG	1 cut(s)	671
Bsu15I	ATCGAT	1 cut(s)	126
BsuTUI	ATCGAT	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	2 cut(s)	289, 509
BtsIMutI	CAGTG	2 cut(s)	289, 509
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	775
Cfr10I	RCCGGY	2 cut(s)	815, 848
ClaI	ATCGAT	1 cut(s)	126
Csp6I	GTAC	4 cut(s)	18, 417, 700, 836
CspAI	ACCGGT	2 cut(s)	815, 848
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	6 cut(s)	179, 240, 397, 489, 651, 776
CviQI	GTAC	4 cut(s)	18, 417, 700, 836
DdeI	CTNAG	2 cut(s)	65, 703
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	857
Eco88I	CYCGRG	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	747
EcoT14I	CCWWGG	1 cut(s)	527
EcoT22I	ATGCAT	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	6 cut(s)	182, 243, 400, 492, 654, 779
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FaqI	GGGAC	5 cut(s)	168, 523, 623, 655, 816
FatI	CATG	6 cut(s)	178, 239, 396, 488, 650, 775
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	2 cut(s)	269, 708
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	2 cut(s)	269, 708
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	2 cut(s)	269, 708
GsuI	CTGGAG	1 cut(s)	102
HapII	CCGG	2 cut(s)	816, 849
Hin1II	CATG	6 cut(s)	182, 243, 400, 492, 654, 779
HincII	GTYRAC	3 cut(s)	133, 369, 825
HindII	GTYRAC	3 cut(s)	133, 369, 825
HinfI	GANTC	4 cut(s)	347, 408, 802, 826
HpaII	CCGG	2 cut(s)	816, 849
HphI	GGTGA	5 cut(s)	4, 403, 581, 764, 830
Hpy166II	GTNNAC	4 cut(s)	133, 369, 755, 825
Hpy188I	TCNGA	1 cut(s)	518
Hpy188III	TCNNGA	2 cut(s)	428, 776
Hpy8I	GTNNAC	4 cut(s)	133, 369, 755, 825
HpyAV	CCTTC	2 cut(s)	545, 632
HpyCH4III	ACNGT	2 cut(s)	22, 159
HpyCH4IV	ACGT	1 cut(s)	698
HpyCH4V	TGCA	9 cut(s)	31, 178, 199, 239, 243, 256, 358, 721, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	184, 236, 494, 532, 562
HpyF3I	CTNAG	2 cut(s)	65, 703
HpySE526I	ACGT	1 cut(s)	698
Hsp92II	CATG	6 cut(s)	182, 243, 400, 492, 654, 779
LmnI	GCTCC	3 cut(s)	502, 540, 814
LpnPI	CCDG	8 cut(s)	28, 132, 220, 242, 427, 734, 761, 829
Lsp1109I	GCAGC	2 cut(s)	280, 694
LweI	GCATC	4 cut(s)	93, 478, 484, 730
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	698
MboII	GAAGA	5 cut(s)	51, 335, 706, 746, 762
MfeI	CAATTG	1 cut(s)	716
MluCI	AATT	3 cut(s)	292, 716, 787
MlyI	GAGTC	2 cut(s)	811, 820
MmeI	TCCRAC	2 cut(s)	541, 836
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	5 cut(s)	170, 401, 464, 477, 624
MslI	CAYNNNNRTG	2 cut(s)	669, 726
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	2 cut(s)	816, 849
MspR9I	CCNGG	1 cut(s)	749
MunI	CAATTG	1 cut(s)	716
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	749
MwoI	GCNNNNNNNGC	5 cut(s)	184, 236, 494, 532, 562
NlaIII	CATG	6 cut(s)	182, 243, 400, 492, 654, 779
NlaIV	GGNNCC	2 cut(s)	45, 536
NsiI	ATGCAT	1 cut(s)	245
NspI	RCATGY	3 cut(s)	182, 243, 654
PaeI	GCATGC	1 cut(s)	243
PagI	TCATGA	1 cut(s)	775
PciI	ACATGT	1 cut(s)	650
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	347, 408
PflMI	CCANNNNNTGG	1 cut(s)	40
PinAI	ACCGGT	2 cut(s)	815, 848
PkrI	GCNGC	2 cut(s)	270, 709
PleI	GAGTC	2 cut(s)	810, 820
PpsI	GAGTC	2 cut(s)	810, 820
PscI	ACATGT	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	747
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	2 cut(s)	45, 536
RsaI	GTAC	4 cut(s)	19, 418, 701, 837
RsaNI	GTAC	4 cut(s)	18, 417, 700, 836
RseI	CAYNNNNRTG	2 cut(s)	669, 726
SaqAI	TTAA	5 cut(s)	170, 401, 464, 477, 624
SatI	GCNGC	2 cut(s)	269, 708
SchI	GAGTC	2 cut(s)	811, 820
ScrFI	CCNGG	1 cut(s)	749
SfaNI	GCATC	4 cut(s)	93, 478, 484, 730
SmiMI	CAYNNNNRTG	2 cut(s)	669, 726
SmlI	CTYRAG	2 cut(s)	428, 476
SmoI	CTYRAG	2 cut(s)	428, 476
SphI	GCATGC	1 cut(s)	243
Sse9I	AATT	3 cut(s)	292, 716, 787
SsiI	CCGC	4 cut(s)	51, 82, 500, 859
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	747
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	2 cut(s)	22, 159
TaiI	ACGT	1 cut(s)	701
TaqI	TCGA	3 cut(s)	126, 139, 843
TasI	AATT	3 cut(s)	292, 716, 787
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	347, 408
Tru1I	TTAA	5 cut(s)	170, 401, 464, 477, 624
Tru9I	TTAA	5 cut(s)	170, 401, 464, 477, 624
TscAI	CASTG	2 cut(s)	289, 509
TseI	GCWGC	2 cut(s)	268, 707
TspDTI	ATGAA	6 cut(s)	360, 385, 393, 564, 756, 756
TspRI	CASTG	2 cut(s)	289, 509
Van91I	CCANNNNNTGG	1 cut(s)	40
Vha464I	CTTAAG	1 cut(s)	476
XapI	RAATTY	1 cut(s)	787
XceI	RCATGY	3 cut(s)	182, 243, 654
XmaJI	CCTAGG	1 cut(s)	527
XspI	CTAG	1 cut(s)	528
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.