Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012705

Physical Location & Seq

Genomic Coordinates Forward (+)

20006371 .. 20014837

Gene Structure 8467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG178200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGAAGCTCCAGCTCTTTAGGGGCGACACAATCCTCATCAAGTTGAGGCACCATAGGAGTGAAGACTTAGCTGCTGACCAATTGCATCAAGGTGGGGAAGACGATGAAAGCCTGGGAGAACATCTCATTTCATCTTCTCATGACGATAAAAATTCTGCAAAAAGTTTGTTGAGTGGATGGGTTGTTGCTGTTCCGGGACTGAAATTACTCAAGATGTTGGATGGATACTTACTTCTTTTTCCAGTAGTTTCTGCAGTGCTTCCTTGTAGGAATACCTTGTTACAGCATCCAAGAACCCGATCTTGTATGTCTTCTTCAGTTCCCCTAGACTCCAGGAAAATGTTGGGGAAATTTGGGAAGATCAATAAGCATGTACGGTTTCCTGAAATTCTGGACTTGGCGCCTTATATGAGTGGTACAAGTGATAGAACAAATGGTTCAAGATTGATGACAGCACGCAAATCTGATATAATTAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

169

Amino Acids

18.83

Weight (kDa)

9.14

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012705)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0025378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015130 Rroxscaffold_3G00265680 Rroxscaffold_5G00352540
rosa_rugosa	Rorug03G0071900 Rorug03G0072000
rosa_samantha	Rh1AG000200 Rh1AG207500 Rh1CG192300 Rh4AG243600 Rh4BG248500 Rh4BG248600 Rh5AG178200 Rh5AG456300 Rh6CG011200 Rh6CG320600 Rh6DG012500 Rh6DG305900 Rh7DG283100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	51, 403
AcsI	RAATTY	3 cut(s)	154, 353, 390
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	2 cut(s)	378, 421
AgsI	TTSAA	1 cut(s)	444
AjnI	CCWGG	2 cut(s)	114, 335
AluBI	AGCT	3 cut(s)	10, 16, 74
AluI	AGCT	3 cut(s)	10, 16, 74
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	3 cut(s)	154, 353, 390
AspLEI	GCGC	1 cut(s)	406
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	503
BanI	GGYRCC	2 cut(s)	51, 403
BarI	GAAGNNNNNNTAC	2 cut(s)	301, 333
BbsI	GAAGAC	3 cut(s)	72, 108, 306
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	174, 218
BciT130I	CCWGG	2 cut(s)	116, 337
BciVI	GTATCC	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	2 cut(s)	329, 498
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	407
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	3 cut(s)	116, 198, 337
BmiI	GGNNCC	2 cut(s)	53, 405
BmrFI	CCNGG	3 cut(s)	116, 198, 337
BmsI	GCATC	2 cut(s)	97, 298
BpiI	GAAGAC	3 cut(s)	72, 108, 306
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	116, 337
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	3 cut(s)	185, 229, 289
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	61
BshNI	GGYRCC	2 cut(s)	51, 403
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	302, 363
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	53, 405
BspMAI	CTGCAG	1 cut(s)	259
BspT107I	GGYRCC	2 cut(s)	51, 403
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	302, 363
BssNI	GRCGYC	1 cut(s)	404
Bst2UI	CCWGG	2 cut(s)	116, 337
Bst4CI	ACNGT	1 cut(s)	381
BstACI	GRCGYC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	70
BstF5I	GGATG	3 cut(s)	185, 229, 289
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	2 cut(s)	305, 366
BstMBI	GATC	2 cut(s)	302, 363
BstNI	CCWGG	2 cut(s)	116, 337
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	3 cut(s)	114, 196, 335
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	3 cut(s)	72, 108, 306
BsuI	GTATCC	1 cut(s)	221
BtsCI	GGATG	3 cut(s)	185, 229, 289
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	460
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	377, 420
CviAII	CATG	2 cut(s)	143, 374
CviJI	RGCY	5 cut(s)	10, 16, 74, 114, 497
CviKI_1	RGCY	5 cut(s)	10, 16, 74, 114, 497
CviQI	GTAC	2 cut(s)	377, 420
DdeI	CTNAG	1 cut(s)	70
DinI	GGCGCC	1 cut(s)	405
DpnI	GATC	2 cut(s)	304, 365
DpnII	GATC	2 cut(s)	302, 363
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	114, 335
EgeI	GGCGCC	1 cut(s)	405
EheI	GGCGCC	1 cut(s)	405
FaeI	CATG	2 cut(s)	146, 377
FaiI	YATR	8 cut(s)	57, 144, 311, 375, 411, 413, 473, 486
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	2 cut(s)	142, 373
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	3 cut(s)	192, 236, 276
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	329, 498
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	319
HaeII	RGCGCY	1 cut(s)	407
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	146, 377
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	5 cut(s)	143, 214, 386, 395, 444
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4V	TGCA	3 cut(s)	88, 161, 257
HpyF3I	CTNAG	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	2 cut(s)	146, 377
HspAI	GCGC	1 cut(s)	404
KasI	GGCGCC	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	302, 363
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	9 cut(s)	26, 101, 128, 210, 258, 322, 349, 380, 399
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	97, 298
MaeI	CTAG	2 cut(s)	329, 498
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	2 cut(s)	304, 365
MboI	GATC	2 cut(s)	302, 363
MboII	GAAGA	6 cut(s)	77, 113, 129, 306, 309, 373
MfeI	CAATTG	1 cut(s)	83
MluCI	AATT	6 cut(s)	83, 154, 206, 353, 390, 474
Mly113I	GGCGCC	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	3 cut(s)	42, 47, 487
MseI	TTAA	2 cut(s)	477, 508
MslI	CAYNNNNRTG	3 cut(s)	60, 93, 489
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	3 cut(s)	116, 198, 337
MunI	CAATTG	1 cut(s)	83
MvaI	CCWGG	2 cut(s)	116, 337
NarI	GGCGCC	1 cut(s)	404
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	302, 363
NlaIII	CATG	2 cut(s)	146, 377
NlaIV	GGNNCC	2 cut(s)	53, 405
NspI	RCATGY	1 cut(s)	377
PagI	TCATGA	1 cut(s)	142
PfoI	TCCNGGA	2 cut(s)	196, 335
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	326
PluTI	GGCGCC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	114, 335
PspGI	CCWGG	2 cut(s)	114, 335
PspN4I	GGNNCC	2 cut(s)	53, 405
PstI	CTGCAG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	378, 421
RsaNI	GTAC	2 cut(s)	377, 420
RseI	CAYNNNNRTG	3 cut(s)	60, 93, 489
SaqAI	TTAA	2 cut(s)	477, 508
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	302, 363
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	116, 198, 337
SetI	ASST	6 cut(s)	12, 18, 76, 97, 281, 493
SfaNI	GCATC	2 cut(s)	97, 298
SfcI	CTRYAG	1 cut(s)	255
SfoI	GGCGCC	1 cut(s)	405
SmiMI	CAYNNNNRTG	3 cut(s)	60, 93, 489
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	6 cut(s)	83, 154, 206, 353, 390, 474
SspDI	GGCGCC	1 cut(s)	403
SspMI	CTAG	2 cut(s)	329, 498
StyD4I	CCNGG	3 cut(s)	114, 196, 335
TaaI	ACNGT	1 cut(s)	381
TasI	AATT	6 cut(s)	83, 154, 206, 353, 390, 474
Tru1I	TTAA	2 cut(s)	477, 508
Tru9I	TTAA	2 cut(s)	477, 508
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	123, 123
TspRI	CASTG	1 cut(s)	264
XapI	RAATTY	3 cut(s)	154, 353, 390
XceI	RCATGY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XspI	CTAG	2 cut(s)	329, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.