Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012705

Physical Location & Seq

Genomic Coordinates Reverse (-)

5718395 .. 5718834

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0071900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGGAGACTGCGACCCAACGCCGCGATCCGGCCGGTGCTCCACCGTCAGGCCACCTCCGGCTGGCGCATGGCCACCGATCTTTTCCTATGGTCGTCGTCGTCTCGTTTCCGGTCACTATTCGCTCAATCGTCGGCTGTGGAGGGAGAATCGACGGTGAGAACATTGAAACTTTGCCGGCGGGTTCAGCGAATTCAGGCGACTCCGGCCACCGTTTGGGCTGCATGTGGTTTTAATGATTTCCGTTTCTGGGTTGGTTTCGGCTCCGCCGTGTTCTTCAACGCCGGCGACTTCTCTGACCTTTCTGGGCTTCGTTTCTTGCTGGGCTGCACACATAGGCCAACAATTGAGAAGCTTGTTGAGCTTCTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

124

Amino Acids

13.9

Weight (kDa)

11.25

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012705)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0025378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015130 Rroxscaffold_3G00265680 Rroxscaffold_5G00352540
rosa_rugosa	Rorug03G0071900 Rorug03G0072000
rosa_samantha	Rh1AG000200 Rh1AG207500 Rh1CG192300 Rh4AG243600 Rh4BG248500 Rh4BG248600 Rh5AG178200 Rh5AG456300 Rh6CG011200 Rh6CG320600 Rh6DG012500 Rh6DG305900 Rh7DG283100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	216
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	24, 181, 267
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	3 cut(s)	32, 72, 207
AcsI	RAATTY	1 cut(s)	192
AfiI	CCNNNNNNNGG	5 cut(s)	30, 49, 63, 216, 250
AgsI	TTSAA	2 cut(s)	169, 280
AluBI	AGCT	2 cut(s)	355, 364
AluI	AGCT	2 cut(s)	355, 364
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	6 cut(s)	32, 51, 72, 207, 338, 369
ApeKI	GCWGC	2 cut(s)	221, 327
ApoI	RAATTY	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	208, 314
BceAI	ACGGC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	108
BisI	GCNGC	3 cut(s)	24, 222, 328
BlsI	GCNGC	3 cut(s)	25, 223, 329
BmiI	GGNNCC	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 49, 63, 216, 250
Bse118I	RCCGGY	3 cut(s)	34, 177, 284
BseLI	CCNNNNNNNGG	5 cut(s)	30, 49, 63, 216, 250
BseX3I	CGGCCG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	208, 314
BseYI	CCCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	6 cut(s)	34, 53, 74, 209, 340, 371
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	7 cut(s)	31, 35, 60, 112, 178, 206, 285
BslI	CCNNNNNNNGG	5 cut(s)	30, 49, 63, 216, 250
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsnI	GGCC	6 cut(s)	34, 53, 74, 209, 340, 371
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	27, 79
BspACI	CCGC	3 cut(s)	24, 181, 267
BspANI	GGCC	6 cut(s)	34, 53, 74, 209, 340, 371
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	22
BsrFI	RCCGGY	3 cut(s)	34, 177, 284
BssAI	RCCGGY	3 cut(s)	34, 177, 284
BssMI	GATC	2 cut(s)	27, 79
Bst4CI	ACNGT	3 cut(s)	47, 157, 214
BstC8I	GCNNGC	3 cut(s)	65, 179, 286
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	30, 82
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	27, 79
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 206, 361
BstNSI	RCATGY	1 cut(s)	228
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	208, 314
BstZI	CGGCCG	1 cut(s)	32
BsuRI	GGCC	6 cut(s)	34, 53, 74, 209, 340, 371
Cac8I	GCNNGC	3 cut(s)	65, 179, 286
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	3 cut(s)	34, 177, 284
CviAII	CATG	2 cut(s)	70, 225
DpnI	GATC	2 cut(s)	29, 81
DpnII	GATC	2 cut(s)	27, 79
EaeI	YGGCCR	3 cut(s)	32, 72, 207
EagI	CGGCCG	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	256
EclXI	CGGCCG	1 cut(s)	32
Eco52I	CGGCCG	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	2 cut(s)	73, 228
FaiI	YATR	4 cut(s)	71, 91, 226, 336
FatI	CATG	2 cut(s)	69, 224
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	24, 222, 328
Fsp4HI	GCNGC	3 cut(s)	24, 222, 328
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	3 cut(s)	24, 222, 328
GsaI	CCCAGC	1 cut(s)	326
HaeIII	GGCC	6 cut(s)	34, 53, 74, 209, 340, 371
HapII	CCGG	7 cut(s)	31, 35, 60, 112, 178, 206, 285
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	73, 228
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	2 cut(s)	149, 202
HpaII	CCGG	7 cut(s)	31, 35, 60, 112, 178, 206, 285
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	298
Hpy99I	CGWCG	4 cut(s)	100, 103, 136, 157
HpyCH4III	ACNGT	3 cut(s)	47, 157, 214
HpyCH4V	TGCA	2 cut(s)	224, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 206, 361
Hsp92II	CATG	2 cut(s)	73, 228
HspAI	GCGC	1 cut(s)	67
KroI	GCCGGC	2 cut(s)	177, 284
KroNI	GCCGGC	2 cut(s)	179, 286
Kzo9I	GATC	2 cut(s)	27, 79
LmnI	GCTCC	2 cut(s)	45, 269
Lsp1109I	GCAGC	2 cut(s)	208, 314
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	2 cut(s)	29, 81
MboI	GATC	2 cut(s)	27, 79
MboII	GAAGA	1 cut(s)	268
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	2 cut(s)	192, 345
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	2 cut(s)	67, 136
Mox20I	TGGCCA	1 cut(s)	74
MreI	CGCCGGCG	1 cut(s)	284
MroNI	GCCGGC	2 cut(s)	177, 284
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	7 cut(s)	31, 35, 60, 112, 178, 206, 285
MunI	CAATTG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	187, 206, 361
NaeI	GCCGGC	2 cut(s)	179, 286
NdeII	GATC	2 cut(s)	27, 79
NgoMIV	GCCGGC	2 cut(s)	177, 284
NlaIII	CATG	2 cut(s)	73, 228
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	114
NspI	RCATGY	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	2 cut(s)	179, 286
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	216
PkrI	GCNGC	3 cut(s)	25, 223, 329
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	3 cut(s)	24, 222, 328
Sau3AI	GATC	2 cut(s)	27, 79
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	4 cut(s)	59, 303, 357, 366
SgrAI	CRCCGGYG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	192, 345
SsiI	CCGC	3 cut(s)	24, 181, 267
TaaI	ACNGT	3 cut(s)	47, 157, 214
TaqI	TCGA	1 cut(s)	152
TasI	AATT	2 cut(s)	192, 345
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	2 cut(s)	221, 327
Tsp45I	GTSAC	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.