Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012705

Physical Location & Seq

Genomic Coordinates Reverse (-)

29602025 .. 29616022

Gene Structure 13998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAAGAAGTGCGGAAGCCATTCATCGCCTATGCCTCGAACCACAATCACCAGTACCACTTCTCTTGAGGAAAAGAGAGGAGACAATCTGTGGGTTCTCTTAAAGCATCAGCTTTCTAACAGAAAAGATGATGGTATGAAGCACTTTGGATTGGAACTGTCTTTAAGAAGTTCGGATGGTTCACACAAGGAAGTGACCGAGGAGAGGCCTGCACCGAAACATTCCGATGACTCTACCTTTTCACGGGGTTATATGGCCGAGGGTTTAGCAATATCTCTATCAAGGAGATCAAGGGCGTGGAGACCAAACTTGAGAAAGCAATTAGCAGAATTAGATCCAAGAAGGAGGCATGGTGAAAAAGAAAAGGGGAGGAGAGAGGGCAATGAAAGACGGGACGACAGGGATTTTAACCATGATGGCGAAGGGACTTCAACATGCAGCATTTTCCACACAAATGGAAATCCACTCGTAGAAGTGAAGACGTACTTAGCTGCTGACCAATTGCATCAAGGTGGGGAAGACAATGAAAGCCTGGGTGAACATCTCATTTCATCTTCTCATGACGATAAAAATTCTGCAAAAAAAATCGCCACTAGAGGCTGCCACGCAGACGACCGGAGCAAGGAGGCGAGTCGATCCGGAACGTTTCATCGCCGGAGCTCGCCGAAAAGCCGGTCCGGATCGAAGAGATTTAATCTCCCGTATGGAAAAAAGGATAAGGAAGAGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

244

Amino Acids

27.61

Weight (kDa)

9.47

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012705)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0025378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015130 Rroxscaffold_3G00265680 Rroxscaffold_5G00352540
rosa_rugosa	Rorug03G0071900 Rorug03G0072000
rosa_samantha	Rh1AG000200 Rh1AG207500 Rh1CG192300 Rh4AG243600 Rh4BG248500 Rh4BG248600 Rh5AG178200 Rh5AG456300 Rh6CG011200 Rh6CG320600 Rh6DG012500 Rh6DG305900 Rh7DG283100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	638, 677
AciI	CCGC	1 cut(s)	12
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	3 cut(s)	329, 630, 688
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	571
AfaI	GTAC	2 cut(s)	55, 485
AfiI	CCNNNNNNNGG	3 cut(s)	204, 243, 622
AgsI	TTSAA	1 cut(s)	432
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	3 cut(s)	112, 491, 660
AluI	AGCT	3 cut(s)	112, 491, 660
Alw21I	GWGCWC	1 cut(s)	662
Alw26I	GTCTC	2 cut(s)	75, 295
AlwI	GGATC	3 cut(s)	329, 630, 688
Aor13HI	TCCGGA	2 cut(s)	638, 677
AoxI	GGCC	2 cut(s)	206, 255
ApeKI	GCWGC	3 cut(s)	438, 491, 600
ApoI	RAATTY	1 cut(s)	571
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
Asp700I	GAANNNNTTC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	675
AsuHPI	GGTGA	3 cut(s)	40, 365, 548
AvaII	GGWCC	1 cut(s)	675
BanII	GRGCYC	1 cut(s)	662
BbsI	GAAGAC	2 cut(s)	485, 525
Bbv12I	GWGCWC	1 cut(s)	662
BbvI	GCAGC	3 cut(s)	450, 478, 587
BccI	CCATC	3 cut(s)	125, 170, 410
BciT130I	CCWGG	1 cut(s)	533
BcoDI	GTCTC	2 cut(s)	75, 295
BfaI	CTAG	1 cut(s)	594
BisI	GCNGC	3 cut(s)	439, 492, 601
BlsI	GCNGC	3 cut(s)	440, 493, 602
Bme1390I	CCNGG	1 cut(s)	533
Bme18I	GGWCC	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	675
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	2 cut(s)	115, 514
BpiI	GAAGAC	2 cut(s)	485, 525
BpuEI	CTTGAG	2 cut(s)	86, 331
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	3 cut(s)	198, 258, 532
BsaWI	WCCGGW	3 cut(s)	615, 638, 677
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 243, 622
Bse118I	RCCGGY	1 cut(s)	672
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	388
BseAI	TCCGGA	2 cut(s)	638, 677
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	3 cut(s)	198, 258, 532
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	3 cut(s)	204, 243, 622
BseMI	GCAATG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	3 cut(s)	93, 215, 385
BseXI	GCAGC	3 cut(s)	450, 478, 587
BsgI	GTGCAG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	616
BshFI	GGCC	2 cut(s)	208, 257
BsiEI	CGRYCG	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	662
BsiSI	CCGG	5 cut(s)	616, 639, 655, 673, 678
BslFI	GGGAC	2 cut(s)	407, 439
BslI	CCNNNNNNNGG	3 cut(s)	204, 243, 622
BsmAI	GTCTC	2 cut(s)	75, 295
BsmFI	GGGAC	2 cut(s)	407, 439
BsnI	GGCC	2 cut(s)	208, 257
Bso31I	GGTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp13I	TCCGGA	2 cut(s)	638, 677
Bsp143I	GATC	4 cut(s)	287, 334, 635, 680
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	208, 257
BspEI	TCCGGA	2 cut(s)	638, 677
BspHI	TCATGA	1 cut(s)	559
BspPI	GGATC	3 cut(s)	329, 630, 688
BspTNI	GGTCTC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	672
BssECI	CCNNGG	3 cut(s)	198, 258, 532
BssMI	GATC	4 cut(s)	287, 334, 635, 680
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	2 cut(s)	680, 717
BstC8I	GCNNGC	2 cut(s)	210, 662
BstDEI	CTNAG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	4 cut(s)	290, 337, 638, 683
BstMAI	GTCTC	2 cut(s)	75, 295
BstMBI	GATC	4 cut(s)	287, 334, 635, 680
BstMCI	CGRYCG	1 cut(s)	616
BstNI	CCWGG	1 cut(s)	533
BstNSI	RCATGY	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	450, 478, 587
BstV2I	GAAGAC	2 cut(s)	485, 525
BstX2I	RGATCY	1 cut(s)	334
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	208, 257
BtgZI	GCGATG	2 cut(s)	9, 635
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	210, 662
CciI	TCATGA	1 cut(s)	559
Cfr10I	RCCGGY	1 cut(s)	672
Cfr13I	GGNCC	1 cut(s)	675
CpoI	CGGWCCG	1 cut(s)	675
Csp6I	GTAC	2 cut(s)	54, 484
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CspI	CGGWCCG	1 cut(s)	675
CviAII	CATG	4 cut(s)	350, 413, 435, 560
CviJI	RGCY	9 cut(s)	18, 112, 208, 257, 491, 531, 600, 660, 672
CviKI_1	RGCY	9 cut(s)	18, 112, 208, 257, 491, 531, 600, 660, 672
CviQI	GTAC	2 cut(s)	54, 484
DdeI	CTNAG	1 cut(s)	487
DpnI	GATC	4 cut(s)	289, 336, 637, 682
DpnII	GATC	4 cut(s)	287, 334, 635, 680
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	680, 717
EarI	CTCTTC	2 cut(s)	680, 717
Ecl136II	GAGCTC	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	662
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	675
Eco53kI	GAGCTC	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	662
FaeI	CATG	4 cut(s)	353, 416, 438, 563
FaiI	YATR	9 cut(s)	32, 137, 252, 254, 351, 414, 436, 561, 705
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	2 cut(s)	407, 439
FatI	CATG	4 cut(s)	349, 412, 434, 559
Fnu4HI	GCNGC	3 cut(s)	439, 492, 601
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	3 cut(s)	439, 492, 601
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	3 cut(s)	439, 492, 601
HaeIII	GGCC	2 cut(s)	208, 257
HapII	CCGG	5 cut(s)	616, 639, 655, 673, 678
Hin1II	CATG	4 cut(s)	353, 416, 438, 563
HinfI	GANTC	2 cut(s)	230, 631
HpaII	CCGG	5 cut(s)	616, 639, 655, 673, 678
HphI	GGTGA	3 cut(s)	40, 365, 548
Hpy166II	GTNNAC	2 cut(s)	182, 539
Hpy188I	TCNGA	2 cut(s)	175, 226
Hpy188III	TCNNGA	4 cut(s)	65, 560, 639, 678
Hpy8I	GTNNAC	2 cut(s)	182, 539
HpyAV	CCTTC	3 cut(s)	336, 416, 721
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	2 cut(s)	482, 644
HpyCH4V	TGCA	4 cut(s)	212, 438, 505, 578
HpyF3I	CTNAG	1 cut(s)	487
HpySE526I	ACGT	2 cut(s)	482, 644
Hsp92II	CATG	4 cut(s)	353, 416, 438, 563
Kpn2I	TCCGGA	2 cut(s)	638, 677
Kzo9I	GATC	4 cut(s)	287, 334, 635, 680
LmnI	GCTCC	2 cut(s)	618, 657
Lsp1109I	GCAGC	3 cut(s)	450, 478, 587
LweI	GCATC	2 cut(s)	115, 514
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	2 cut(s)	482, 644
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	4 cut(s)	289, 336, 637, 682
MboI	GATC	4 cut(s)	287, 334, 635, 680
MboII	GAAGA	6 cut(s)	16, 490, 530, 546, 697, 734
MfeI	CAATTG	1 cut(s)	500
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	662
MluCI	AATT	4 cut(s)	320, 329, 500, 571
MlyI	GAGTC	2 cut(s)	224, 640
MroI	TCCGGA	2 cut(s)	638, 677
MroXI	GAANNNNTTC	1 cut(s)	19
MseI	TTAA	4 cut(s)	101, 164, 408, 693
MslI	CAYNNNNRTG	3 cut(s)	225, 453, 510
MspI	CCGG	5 cut(s)	616, 639, 655, 673, 678
MspR9I	CCNGG	1 cut(s)	533
MunI	CAATTG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	533
NdeII	GATC	4 cut(s)	287, 334, 635, 680
NlaIII	CATG	4 cut(s)	353, 416, 438, 563
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	438
PagI	TCATGA	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	440, 493, 602
PleI	GAGTC	2 cut(s)	224, 639
PpsI	GAGTC	2 cut(s)	224, 639
Psp124BI	GAGCTC	1 cut(s)	662
Psp1406I	AACGTT	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	55, 485
RsaNI	GTAC	2 cut(s)	54, 484
RseI	CAYNNNNRTG	3 cut(s)	225, 453, 510
Rsr2I	CGGWCCG	1 cut(s)	675
RsrII	CGGWCCG	1 cut(s)	675
SacI	GAGCTC	1 cut(s)	662
SaqAI	TTAA	4 cut(s)	101, 164, 408, 693
SatI	GCNGC	3 cut(s)	439, 492, 601
Sau3AI	GATC	4 cut(s)	287, 334, 635, 680
Sau96I	GGNCC	1 cut(s)	675
SchI	GAGTC	2 cut(s)	224, 640
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	662
SetI	ASST	7 cut(s)	114, 239, 485, 493, 514, 647, 662
SfaNI	GCATC	2 cut(s)	115, 514
SinI	GGWCC	1 cut(s)	675
SmiMI	CAYNNNNRTG	3 cut(s)	225, 453, 510
SmlI	CTYRAG	2 cut(s)	65, 310
SmoI	CTYRAG	2 cut(s)	65, 310
Sse9I	AATT	4 cut(s)	320, 329, 500, 571
SseBI	AGGCCT	1 cut(s)	208
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	662
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	531
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	2 cut(s)	485, 647
TaqI	TCGA	3 cut(s)	37, 634, 683
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	4 cut(s)	320, 329, 500, 571
Tru1I	TTAA	4 cut(s)	101, 164, 408, 693
Tru9I	TTAA	4 cut(s)	101, 164, 408, 693
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	438, 491, 600
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	7 cut(s)	12, 17, 152, 399, 540, 540, 638
VpaK11BI	GGWCC	1 cut(s)	675
XapI	RAATTY	1 cut(s)	571
XceI	RCATGY	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.