Rh6CG011200

PAP-specific phosphatase HAL2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012705
Physical Location & Seq
Forward (+)
1296969 .. 1299394
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG011200.1

Sequence Viewer

Length: 327 bp
ATGGAGGAAGATAAGTACGCTAAGGAGTTGGACGTGGCCGTTAGAGTTGTGCACATGGCTTGTGCTCTGTGTCAGAGAGTTCAAGAGGGTTTGGTTTCAGCTAGCACTGACCAGGTGAAGTCCAAAGACGATGATTCCCCTGTAACAATTGCAGATATTGACATGCTGTTGATATCCAGGGGATATATGGCTGAGGGTTTGAGCAATATGTCCATCAAGGAGCTCAAGGGCGTGGAGACCAAACTTGAGAAAGCAATTAGCAGAATTAGATCCAAGAAGGATTGGAAGATATGTTCTCTTAAAGAAAAGCAGTTACTCAAAGCTTAG

Protein Analysis

108

Amino Acids

12.1

Weight (kDa)

7.66

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 59 - 97 1.1e-08 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 36
AfaI GTAC 1 cut(s) 17
AgsI TTSAA 1 cut(s) 83
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 2 cut(s) 111, 176
AloI GAACNNNNNNTCC 2 cut(s) 277, 309
AluBI AGCT 3 cut(s) 101, 223, 323
AluI AGCT 3 cut(s) 101, 223, 323
Alw21I GWGCWC 3 cut(s) 54, 67, 225
Alw26I GTCTC 1 cut(s) 230
Alw44I GTGCAC 1 cut(s) 50
AlwI GGATC 1 cut(s) 264
AoxI GGCC 1 cut(s) 36
ApaLI GTGCAC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 3 cut(s) 54, 67, 225
BbvCI CCTCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 113, 178
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 102
Bme1390I CCNGG 2 cut(s) 113, 178
BmgBI CACGTC 1 cut(s) 34
BmrFI CCNGG 2 cut(s) 113, 178
BmtI GCTAGC 1 cut(s) 105
Bpu10I CCTNAGC 2 cut(s) 21, 192
BpuEI CTTGAG 2 cut(s) 209, 266
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 177
BseBI CCWGG 2 cut(s) 113, 178
BseDI CCNNGG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 183
BseSI GKGCMC 1 cut(s) 54
BshFI GGCC 1 cut(s) 38
BsiHKAI GWGCWC 3 cut(s) 54, 67, 225
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 230
Bsp1286I GDGCHC 3 cut(s) 54, 67, 225
Bsp143I GATC 1 cut(s) 269
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 184
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 269
Bst2UI CCWGG 2 cut(s) 113, 178
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 3 cut(s) 21, 192, 324
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 269
BstNI CCWGG 2 cut(s) 113, 178
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 111, 176
BstSLI GKGCMC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 38
BtrI CACGTC 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 103
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 1 cut(s) 16
CviAII CATG 2 cut(s) 55, 163
CviJI RGCY 6 cut(s) 38, 59, 101, 191, 223, 323
CviKI_1 RGCY 6 cut(s) 38, 59, 101, 191, 223, 323
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 3 cut(s) 21, 192, 324
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 230
Eco32I GATATC 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 111, 176
EcoRV GATATC 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 2 cut(s) 58, 166
FaiI YATR 6 cut(s) 56, 164, 186, 188, 209, 292
FatI CATG 2 cut(s) 54, 162
FriOI GRGCYC 1 cut(s) 225
FspBI CTAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 38
Hin1II CATG 2 cut(s) 58, 166
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 52, 152
HpyF3I CTNAG 3 cut(s) 21, 192, 324
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 58, 166
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 5 cut(s) 98, 125, 153, 163, 190
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 142, 312
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 2 cut(s) 20, 298
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 3 cut(s) 54, 67, 225
MluCI AATT 3 cut(s) 147, 255, 264
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 2 cut(s) 79, 187
MseI TTAA 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 113, 178
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 2 cut(s) 113, 178
NdeII GATC 1 cut(s) 269
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 2 cut(s) 58, 166
NspI RCATGY 1 cut(s) 166
PfeI GAWTC 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 111, 176
PspGI CCWGG 2 cut(s) 111, 176
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 113, 178
SduI GDGCHC 3 cut(s) 54, 67, 225
SetI ASST 5 cut(s) 36, 103, 117, 225, 325
SexAI ACCWGGT 1 cut(s) 111
SmlI CTYRAG 2 cut(s) 224, 245
SmoI CTYRAG 2 cut(s) 224, 245
Sse9I AATT 3 cut(s) 147, 255, 264
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 111, 176
TaiI ACGT 1 cut(s) 36
TasI AATT 3 cut(s) 147, 255, 264
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 112
TspRI CASTG 1 cut(s) 112
VneI GTGCAC 1 cut(s) 50
XceI RCATGY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.