Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012705

Physical Location & Seq

Genomic Coordinates Reverse (-)

41811650 .. 41813729

Gene Structure 2080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG192300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGGAAGATAAGTACGCTAAGGAGTTGGACGTGGCCGTTAGAGTGGTGCACATGGCTTGTGCTCTGTGTCAGAGAGTTCAAGAGGGTTTGGTTTCAGCTAGCACTGACCAGGTGAAGTCCAAAGACGATGATTCCCCTGTAACAATTGCAGAAGGGCAAAGGAGGCATGGTGAAAAACAAAAGGAGAGGAGAGAGGGCAAAGAAAGACGGGACGACAGGGATTTTAACCATGATGGTAGTAGGGACTTCAACATGCAGCGTTTTCCACACAAACAGAAATCCACTCATAGGAGTGAAGACTTAGCTGCTGACCAATTGCATCAAGGTGGGGAAGACGATGAAAGCCTGGGAGAACATCTCATTTCATCTTCTCATGACGATAAAAATTCTGCAAAAAGTGAGCATTGTGATGTTTTTGTGCAAAGGAGCAATTTTATGAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008252 GO:0008441 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

149

Amino Acids

17.09

Weight (kDa)

5.7

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012705)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0025378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015130 Rroxscaffold_3G00265680 Rroxscaffold_5G00352540
rosa_rugosa	Rorug03G0071900 Rorug03G0072000
rosa_samantha	Rh1AG000200 Rh1AG207500 Rh1CG192300 Rh4AG243600 Rh4BG248500 Rh4BG248600 Rh5AG178200 Rh5AG456300 Rh6CG011200 Rh6CG320600 Rh6DG012500 Rh6DG305900 Rh7DG283100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	83, 253
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	111, 348
AluBI	AGCT	2 cut(s)	101, 308
AluI	AGCT	2 cut(s)	101, 308
Alw21I	GWGCWC	2 cut(s)	54, 67
Alw44I	GTGCAC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	36
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	259, 308
ApoI	RAATTY	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	127, 185
AsuNHI	GCTAGC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	54
BbsI	GAAGAC	2 cut(s)	306, 342
Bbv12I	GWGCWC	2 cut(s)	54, 67
BbvI	GCAGC	2 cut(s)	271, 295
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	113, 350
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	260, 309
BlsI	GCNGC	2 cut(s)	261, 310
Bme1390I	CCNGG	2 cut(s)	113, 350
BmgBI	CACGTC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	113, 350
BmsI	GCATC	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	306, 342
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
Bpu10I	CCTNAGC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	113, 350
BseDI	CCNNGG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	271, 295
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	54, 67
BslFI	GGGAC	2 cut(s)	227, 260
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmFI	GGGAC	2 cut(s)	227, 260
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	54, 67
BspANI	GGCC	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	376
BspOI	GCTAGC	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	113, 350
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	21, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	2 cut(s)	113, 350
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	111, 348
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	271, 295
BstV2I	GAAGAC	2 cut(s)	306, 342
BsuRI	GGCC	1 cut(s)	38
BtrI	CACGTC	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	376
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	5 cut(s)	55, 170, 233, 256, 377
CviJI	RGCY	5 cut(s)	38, 59, 101, 308, 348
CviKI_1	RGCY	5 cut(s)	38, 59, 101, 308, 348
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	21, 304
EaeI	YGGCCR	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	111, 348
FaeI	CATG	5 cut(s)	58, 173, 236, 259, 380
FaiI	YATR	7 cut(s)	56, 171, 234, 257, 291, 378, 440
FaqI	GGGAC	2 cut(s)	227, 260
FatI	CATG	5 cut(s)	54, 169, 232, 255, 376
Fnu4HI	GCNGC	2 cut(s)	260, 309
Fsp4HI	GCNGC	2 cut(s)	260, 309
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	2 cut(s)	260, 309
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	5 cut(s)	58, 173, 236, 259, 380
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	2 cut(s)	127, 185
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	83, 377
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	6 cut(s)	52, 152, 259, 322, 395, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	2 cut(s)	21, 304
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	58, 173, 236, 259, 380
LmnI	GCTCC	1 cut(s)	429
LpnPI	CCDG	6 cut(s)	98, 125, 153, 205, 335, 362
Lsp1109I	GCAGC	2 cut(s)	271, 295
LweI	GCATC	1 cut(s)	331
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	142
MboII	GAAGA	4 cut(s)	20, 311, 347, 363
MfeI	CAATTG	2 cut(s)	147, 317
MhlI	GDGCHC	2 cut(s)	54, 67
MluCI	AATT	4 cut(s)	147, 317, 388, 433
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	4 cut(s)	79, 159, 183, 190
MseI	TTAA	2 cut(s)	228, 448
MslI	CAYNNNNRTG	3 cut(s)	294, 327, 411
MspR9I	CCNGG	2 cut(s)	113, 350
MunI	CAATTG	2 cut(s)	147, 317
MvaI	CCWGG	2 cut(s)	113, 350
MwoI	GCNNNNNNNGC	1 cut(s)	166
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	5 cut(s)	58, 173, 236, 259, 380
NspI	RCATGY	1 cut(s)	259
PagI	TCATGA	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	261, 310
Psp6I	CCWGG	2 cut(s)	111, 348
PspGI	CCWGG	2 cut(s)	111, 348
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	3 cut(s)	294, 327, 411
SaqAI	TTAA	2 cut(s)	228, 448
SatI	GCNGC	2 cut(s)	260, 309
ScrFI	CCNGG	2 cut(s)	113, 350
SduI	GDGCHC	2 cut(s)	54, 67
SetI	ASST	5 cut(s)	36, 103, 117, 310, 331
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	331
SmiMI	CAYNNNNRTG	3 cut(s)	294, 327, 411
Sse9I	AATT	4 cut(s)	147, 317, 388, 433
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	111, 348
TaiI	ACGT	1 cut(s)	36
TasI	AATT	4 cut(s)	147, 317, 388, 433
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	228, 448
Tru9I	TTAA	2 cut(s)	228, 448
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	2 cut(s)	259, 308
TspDTI	ATGAA	2 cut(s)	357, 357
TspRI	CASTG	1 cut(s)	112
VneI	GTGCAC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	388
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.