Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0012705

Physical Location & Seq

Genomic Coordinates Forward (+)

55264688 .. 55267978

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG243600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGGAAGATAAGTACGCTAAGGAGTTGGACGTGGCCGTTAGAGTGGTGCACATGGCTTGTGCTCTGTGTCAGAGAGTTCAAGAGGGTTTGGTTTCAGCTAGCACTAACCAGGTGAAGTCCAAAGACGATGATTCCCCTGTAACAATTGCAGATATTGACATGCTGTTGATATCCAGGGGATATATGGCTGAGGGTTTGAGCAATATATCAAGGAGCTCTAGGGCGTGGAGAGCAAACTTGAGAAAGCAATTAGCAGAATTAGATCCAAGAAGGATTGGAAGATATGTTCTCTTAAAGAAAAGCAGTTACTCAAAGCTTAGTTGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008252 GO:0008441 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

110

Amino Acids

12.32

Weight (kDa)

9.1

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012705)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0025378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015130 Rroxscaffold_3G00265680 Rroxscaffold_5G00352540
rosa_rugosa	Rorug03G0071900 Rorug03G0072000
rosa_samantha	Rh1AG000200 Rh1AG207500 Rh1CG192300 Rh4AG243600 Rh4BG248500 Rh4BG248600 Rh5AG178200 Rh5AG456300 Rh6CG011200 Rh6CG320600 Rh6DG012500 Rh6DG305900 Rh7DG283100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	83
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	111, 176
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	3 cut(s)	101, 219, 319
AluI	AGCT	3 cut(s)	101, 219, 319
Alw21I	GWGCWC	3 cut(s)	54, 67, 221
Alw44I	GTGCAC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	36
ApaLI	GTGCAC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	127
AsuNHI	GCTAGC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	221
Bbv12I	GWGCWC	3 cut(s)	54, 67, 221
BbvCI	CCTCAGC	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	113, 178
BfaI	CTAG	2 cut(s)	102, 222
Bme1390I	CCNGG	2 cut(s)	113, 178
BmgBI	CACGTC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	113, 178
BmtI	GCTAGC	1 cut(s)	105
Bpu10I	CCTNAGC	2 cut(s)	21, 192
BpuEI	CTTGAG	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	113, 178
BseDI	CCNNGG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	54
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	3 cut(s)	54, 67, 221
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	54, 67, 221
Bsp143I	GATC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	265
Bst2UI	CCWGG	2 cut(s)	113, 178
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	21, 192, 320
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	2 cut(s)	113, 178
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	111, 176
BstSLI	GKGCMC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	38
BtrI	CACGTC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	103
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	55, 163
CviJI	RGCY	6 cut(s)	38, 59, 101, 191, 219, 319
CviKI_1	RGCY	6 cut(s)	38, 59, 101, 191, 219, 319
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	3 cut(s)	21, 192, 320
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	111, 176
EcoRV	GATATC	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	2 cut(s)	58, 166
FaiI	YATR	7 cut(s)	56, 164, 186, 188, 209, 288, 331
FatI	CATG	2 cut(s)	54, 162
FriOI	GRGCYC	1 cut(s)	221
FspBI	CTAG	2 cut(s)	102, 222
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	58, 166
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	267
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	52, 152, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	3 cut(s)	21, 192, 320
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	58, 166
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	5 cut(s)	98, 125, 153, 163, 190
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	2 cut(s)	102, 222
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	142, 308
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	20, 294
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	3 cut(s)	54, 67, 221
MluCI	AATT	3 cut(s)	147, 251, 260
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	2 cut(s)	79, 187
MseI	TTAA	1 cut(s)	296
MspR9I	CCNGG	2 cut(s)	113, 178
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	113, 178
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	265
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	58, 166
NspI	RCATGY	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	111, 176
PspGI	CCWGG	2 cut(s)	111, 176
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	296
Sau3AI	GATC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	113, 178
SduI	GDGCHC	3 cut(s)	54, 67, 221
SetI	ASST	5 cut(s)	36, 103, 117, 221, 321
SexAI	ACCWGGT	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	3 cut(s)	147, 251, 260
SspMI	CTAG	2 cut(s)	102, 222
SstI	GAGCTC	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	111, 176
TaiI	ACGT	1 cut(s)	36
TasI	AATT	3 cut(s)	147, 251, 260
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
VneI	GTGCAC	1 cut(s)	50
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XspI	CTAG	2 cut(s)	102, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.