Zinc finger CCCH domain-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2727 |
| Acc36I | ACCTGC | 1 cut(s) | 2428 |
| AccB1I | GGYRCC | 6 cut(s) | 805, 829, 1505, 1683, 2189, 2401 |
| AccI | GTMKAC | 3 cut(s) | 67, 509, 1285 |
| AccIII | TCCGGA | 1 cut(s) | 160 |
| AciI | CCGC | 4 cut(s) | 1380, 1663, 1948, 2660 |
| AclWI | GGATC | 2 cut(s) | 523, 1334 |
| AcsI | RAATTY | 7 cut(s) | 108, 642, 942, 1124, 1190, 1706, 1999 |
| AcuI | CTGAAG | 7 cut(s) | 337, 802, 807, 855, 1506, 2601, 2613 |
| AfaI | GTAC | 6 cut(s) | 97, 156, 813, 1417, 2676, 2829 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 512, 1947, 2178, 2199 |
| AflIII | ACRYGT | 1 cut(s) | 129 |
| AgeI | ACCGGT | 1 cut(s) | 2269 |
| AjiI | CACGTC | 1 cut(s) | 130 |
| AjnI | CCWGG | 4 cut(s) | 1288, 1299, 1958, 2645 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 218, 250, 390, 422, 2117, 2149 |
| Alw21I | GWGCWC | 2 cut(s) | 168, 1164 |
| Alw26I | GTCTC | 4 cut(s) | 1941, 2372, 2758, 2862 |
| AlwI | GGATC | 2 cut(s) | 523, 1334 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2381 |
| Ama87I | CYCGRG | 1 cut(s) | 2781 |
| Aor13HI | TCCGGA | 1 cut(s) | 160 |
| AoxI | GGCC | 2 cut(s) | 884, 2169 |
| ApeKI | GCWGC | 5 cut(s) | 136, 1913, 2435, 2596, 2698 |
| ApoI | RAATTY | 7 cut(s) | 108, 642, 942, 1124, 1190, 1706, 1999 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1778, 1810 |
| AseI | ATTAAT | 1 cut(s) | 414 |
| AsiGI | ACCGGT | 1 cut(s) | 2269 |
| AspLEI | GCGC | 2 cut(s) | 698, 761 |
| AspS9I | GGNCC | 3 cut(s) | 437, 1529, 2170 |
| AsuHPI | GGTGA | 7 cut(s) | 53, 650, 1706, 1871, 2310, 2345, 2552 |
| AsuII | TTCGAA | 2 cut(s) | 106, 396 |
| AsuNHI | GCTAGC | 1 cut(s) | 1916 |
| AvaI | CYCGRG | 1 cut(s) | 2781 |
| AvaII | GGWCC | 2 cut(s) | 437, 1529 |
| AxyI | CCTNAGG | 1 cut(s) | 441 |
| BanI | GGYRCC | 6 cut(s) | 805, 829, 1505, 1683, 2189, 2401 |
| BanII | GRGCYC | 2 cut(s) | 12, 168 |
| BbsI | GAAGAC | 2 cut(s) | 695, 741 |
| Bbv12I | GWGCWC | 2 cut(s) | 168, 1164 |
| BbvI | GCAGC | 5 cut(s) | 148, 1900, 2447, 2583, 2710 |
| BceAI | ACGGC | 1 cut(s) | 490 |
| BciT130I | CCWGG | 4 cut(s) | 1290, 1301, 1960, 2647 |
| BciVI | GTATCC | 1 cut(s) | 1827 |
| BclI | TGATCA | 1 cut(s) | 1798 |
| BcoDI | GTCTC | 4 cut(s) | 1941, 2372, 2758, 2862 |
| BfaI | CTAG | 8 cut(s) | 693, 888, 1242, 1349, 1604, 1917, 2145, 2478 |
| BfmI | CTRYAG | 4 cut(s) | 600, 1650, 2118, 2466 |
| BfuAI | ACCTGC | 1 cut(s) | 2428 |
| BfuI | GTATCC | 1 cut(s) | 1827 |
| BisI | GCNGC | 6 cut(s) | 137, 1663, 1914, 2436, 2597, 2699 |
| BlsI | GCNGC | 6 cut(s) | 138, 1664, 1915, 2437, 2598, 2700 |
| Bme1390I | CCNGG | 4 cut(s) | 1290, 1301, 1960, 2647 |
| Bme18I | GGWCC | 2 cut(s) | 437, 1529 |
| BmeT110I | CYCGRG | 1 cut(s) | 2781 |
| BmgBI | CACGTC | 1 cut(s) | 130 |
| BmgT120I | GGNCC | 3 cut(s) | 437, 1529, 2170 |
| BmrFI | CCNGG | 4 cut(s) | 1290, 1301, 1960, 2647 |
| BmsI | GCATC | 6 cut(s) | 865, 1439, 1489, 1860, 2647, 2651 |
| BmtI | GCTAGC | 1 cut(s) | 1920 |
| BpiI | GAAGAC | 2 cut(s) | 695, 741 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1239, 1271 |
| BpmI | CTGGAG | 2 cut(s) | 485, 1311 |
| Bpu10I | CCTNAGC | 1 cut(s) | 501 |
| Bpu14I | TTCGAA | 2 cut(s) | 106, 396 |
| BpuEI | CTTGAG | 2 cut(s) | 62, 2560 |
| BsaI | GGTCTC | 1 cut(s) | 2758 |
| BsaJI | CCNNGG | 3 cut(s) | 1300, 1893, 2878 |
| BsaWI | WCCGGW | 4 cut(s) | 160, 512, 610, 2269 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 512, 1947, 2178, 2199 |
| Bse118I | RCCGGY | 1 cut(s) | 2269 |
| Bse1I | ACTGG | 5 cut(s) | 468, 809, 1765, 2191, 2331 |
| Bse21I | CCTNAGG | 1 cut(s) | 441 |
| Bse3DI | GCAATG | 2 cut(s) | 738, 2009 |
| BseAI | TCCGGA | 1 cut(s) | 160 |
| BseBI | CCWGG | 4 cut(s) | 1290, 1301, 1960, 2647 |
| BseDI | CCNNGG | 3 cut(s) | 1300, 1893, 2878 |
| BseGI | GGATG | 7 cut(s) | 463, 709, 1062, 1066, 1504, 1789, 2642 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 512, 1947, 2178, 2199 |
| BseMI | GCAATG | 2 cut(s) | 738, 2009 |
| BseMII | CTCAG | 5 cut(s) | 156, 181, 432, 551, 1270 |
| BseNI | ACTGG | 5 cut(s) | 468, 809, 1765, 2191, 2331 |
| BseRI | GAGGAG | 5 cut(s) | 20, 48, 374, 386, 1260 |
| BseXI | GCAGC | 5 cut(s) | 148, 1900, 2447, 2583, 2710 |
| BseYI | CCCAGC | 1 cut(s) | 2198 |
| BsgI | GTGCAG | 1 cut(s) | 2406 |
| Bsh1285I | CGRYCG | 2 cut(s) | 513, 2274 |
| BshFI | GGCC | 2 cut(s) | 886, 2171 |
| BshNI | GGYRCC | 6 cut(s) | 805, 829, 1505, 1683, 2189, 2401 |
| BshTI | ACCGGT | 1 cut(s) | 2269 |
| BsiEI | CGRYCG | 2 cut(s) | 513, 2274 |
| BsiHKAI | GWGCWC | 2 cut(s) | 168, 1164 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2781 |
| BsiSI | CCGG | 5 cut(s) | 161, 513, 611, 1464, 2270 |
| BslFI | GGGAC | 4 cut(s) | 396, 984, 1971, 2041 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 512, 1947, 2178, 2199 |
| BsmAI | GTCTC | 4 cut(s) | 1941, 2372, 2758, 2862 |
| BsmFI | GGGAC | 4 cut(s) | 396, 984, 1971, 2041 |
| BsmI | GAATGC | 2 cut(s) | 676, 1627 |
| BsnI | GGCC | 2 cut(s) | 886, 2171 |
| Bso31I | GGTCTC | 1 cut(s) | 2758 |
| BsoBI | CYCGRG | 1 cut(s) | 2781 |
| Bsp119I | TTCGAA | 2 cut(s) | 106, 396 |
| Bsp1286I | GDGCHC | 3 cut(s) | 12, 168, 1164 |
| Bsp13I | TCCGGA | 1 cut(s) | 160 |
| Bsp143I | GATC | 6 cut(s) | 515, 622, 1067, 1339, 1798, 1861 |
| BspACI | CCGC | 4 cut(s) | 1380, 1663, 1948, 2660 |
| BspANI | GGCC | 2 cut(s) | 886, 2171 |
| BspCNI | CTCAG | 5 cut(s) | 155, 180, 433, 552, 1269 |
| BspEI | TCCGGA | 1 cut(s) | 160 |
| BspMI | ACCTGC | 1 cut(s) | 2428 |
| BspOI | GCTAGC | 1 cut(s) | 1920 |
| BspPI | GGATC | 2 cut(s) | 523, 1334 |
| BspT104I | TTCGAA | 2 cut(s) | 106, 396 |
| BspT107I | GGYRCC | 6 cut(s) | 805, 829, 1505, 1683, 2189, 2401 |
| BspTNI | GGTCTC | 1 cut(s) | 2758 |
| BsrDI | GCAATG | 2 cut(s) | 738, 2009 |
| BsrFI | RCCGGY | 1 cut(s) | 2269 |
| BsrI | ACTGG | 5 cut(s) | 468, 809, 1765, 2191, 2331 |
| BssAI | RCCGGY | 1 cut(s) | 2269 |
| BssECI | CCNNGG | 3 cut(s) | 1300, 1893, 2878 |
| BssMI | GATC | 6 cut(s) | 515, 622, 1067, 1339, 1798, 1861 |
| BssT1I | CCWWGG | 2 cut(s) | 1893, 2878 |
| Bst2UI | CCWGG | 4 cut(s) | 1290, 1301, 1960, 2647 |
| Bst6I | CTCTTC | 2 cut(s) | 1023, 1362 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 258 |
| BstBI | TTCGAA | 2 cut(s) | 106, 396 |
| BstC8I | GCNNGC | 3 cut(s) | 674, 1584, 1918 |
| BstDEI | CTNAG | 8 cut(s) | 142, 167, 441, 501, 560, 1256, 1272, 1812 |
| BstF5I | GGATG | 7 cut(s) | 463, 709, 1062, 1066, 1504, 1789, 2642 |
| BstHHI | GCGC | 2 cut(s) | 698, 761 |
| BstKTI | GATC | 6 cut(s) | 518, 625, 1070, 1342, 1801, 1864 |
| BstMAI | GTCTC | 4 cut(s) | 1941, 2372, 2758, 2862 |
| BstMBI | GATC | 6 cut(s) | 515, 622, 1067, 1339, 1798, 1861 |
| BstMCI | CGRYCG | 2 cut(s) | 513, 2274 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 81, 258, 1624, 1770, 1913, 2468, 2698 |
| BstNI | CCWGG | 4 cut(s) | 1290, 1301, 1960, 2647 |
| BstSCI | CCNGG | 4 cut(s) | 1288, 1299, 1958, 2645 |
| BstSFI | CTRYAG | 4 cut(s) | 600, 1650, 2118, 2466 |
| BstV1I | GCAGC | 5 cut(s) | 148, 1900, 2447, 2583, 2710 |
| BstV2I | GAAGAC | 2 cut(s) | 695, 741 |
| Bsu36I | CCTNAGG | 1 cut(s) | 441 |
| BsuI | GTATCC | 1 cut(s) | 1827 |
| BsuRI | GGCC | 2 cut(s) | 886, 2171 |
| BtgZI | GCGATG | 3 cut(s) | 276, 888, 1416 |
| BtrI | CACGTC | 1 cut(s) | 130 |
| BtsCI | GGATG | 7 cut(s) | 463, 709, 1062, 1066, 1504, 1789, 2642 |
| BtsI | GCAGTG | 1 cut(s) | 118 |
| BtsIMutI | CAGTG | 4 cut(s) | 118, 361, 1728, 2338 |
| BveI | ACCTGC | 1 cut(s) | 2428 |
| Cac8I | GCNNGC | 3 cut(s) | 674, 1584, 1918 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2381 |
| CfoI | GCGC | 2 cut(s) | 698, 761 |
| Cfr10I | RCCGGY | 1 cut(s) | 2269 |
| Cfr13I | GGNCC | 3 cut(s) | 437, 1529, 2170 |
| CseI | GACGC | 1 cut(s) | 2304 |
| Csp6I | GTAC | 6 cut(s) | 96, 155, 812, 1416, 2675, 2828 |
| CspAI | ACCGGT | 1 cut(s) | 2269 |
| CviQI | GTAC | 6 cut(s) | 96, 155, 812, 1416, 2675, 2828 |
| DdeI | CTNAG | 8 cut(s) | 142, 167, 441, 501, 560, 1256, 1272, 1812 |
| DpnI | GATC | 6 cut(s) | 517, 624, 1069, 1341, 1800, 1863 |
| DpnII | GATC | 6 cut(s) | 515, 622, 1067, 1339, 1798, 1861 |
| DraI | TTTAAA | 1 cut(s) | 2653 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2727 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2727 |
| Eam1104I | CTCTTC | 2 cut(s) | 1023, 1362 |
| EarI | CTCTTC | 2 cut(s) | 1023, 1362 |
| Ecl136II | GAGCTC | 1 cut(s) | 166 |
| Eco130I | CCWWGG | 2 cut(s) | 1893, 2878 |
| Eco147I | AGGCCT | 1 cut(s) | 886 |
| Eco24I | GRGCYC | 2 cut(s) | 12, 168 |
| Eco31I | GGTCTC | 1 cut(s) | 2758 |
| Eco47I | GGWCC | 2 cut(s) | 437, 1529 |
| Eco53kI | GAGCTC | 1 cut(s) | 166 |
| Eco57I | CTGAAG | 7 cut(s) | 337, 802, 807, 855, 1506, 2601, 2613 |
| Eco81I | CCTNAGG | 1 cut(s) | 441 |
| Eco88I | CYCGRG | 1 cut(s) | 2781 |
| EcoICRI | GAGCTC | 1 cut(s) | 166 |
| EcoRI | GAATTC | 2 cut(s) | 108, 1999 |
| EcoRII | CCWGG | 4 cut(s) | 1288, 1299, 1958, 2645 |
| EcoT14I | CCWWGG | 2 cut(s) | 1893, 2878 |
| EcoT22I | ATGCAT | 2 cut(s) | 1775, 2011 |
| EcoT38I | GRGCYC | 2 cut(s) | 12, 168 |
| ErhI | CCWWGG | 2 cut(s) | 1893, 2878 |
| FaqI | GGGAC | 4 cut(s) | 396, 984, 1971, 2041 |
| FauI | CCCGC | 2 cut(s) | 1941, 2653 |
| FauNDI | CATATG | 1 cut(s) | 1008 |
| FbaI | TGATCA | 1 cut(s) | 1798 |
| FblI | GTMKAC | 3 cut(s) | 67, 509, 1285 |
| Fnu4HI | GCNGC | 6 cut(s) | 137, 1663, 1914, 2436, 2597, 2699 |
| FokI | GGATG | 7 cut(s) | 470, 716, 1069, 1073, 1511, 1796, 2629 |
| FriOI | GRGCYC | 2 cut(s) | 12, 168 |
| Fsp4HI | GCNGC | 6 cut(s) | 137, 1663, 1914, 2436, 2597, 2699 |
| FspBI | CTAG | 8 cut(s) | 693, 888, 1242, 1349, 1604, 1917, 2145, 2478 |
| GlaI | GCGC | 2 cut(s) | 697, 760 |
| GluI | GCNGC | 6 cut(s) | 137, 1663, 1914, 2436, 2597, 2699 |
| GsaI | CCCAGC | 1 cut(s) | 2202 |
| GsuI | CTGGAG | 2 cut(s) | 485, 1311 |
| HaeIII | GGCC | 2 cut(s) | 886, 2171 |
| HapII | CCGG | 5 cut(s) | 161, 513, 611, 1464, 2270 |
| HgaI | GACGC | 1 cut(s) | 2304 |
| HhaI | GCGC | 2 cut(s) | 698, 761 |
| Hin6I | GCGC | 2 cut(s) | 696, 759 |
| HinP1I | GCGC | 2 cut(s) | 696, 759 |
| HincII | GTYRAC | 3 cut(s) | 68, 510, 1147 |
| HindII | GTYRAC | 3 cut(s) | 68, 510, 1147 |
| HindIII | AAGCTT | 2 cut(s) | 1410, 2789 |
| HpaII | CCGG | 5 cut(s) | 161, 513, 611, 1464, 2270 |
| HphI | GGTGA | 7 cut(s) | 53, 650, 1706, 1871, 2310, 2345, 2552 |
| Hpy166II | GTNNAC | 7 cut(s) | 68, 320, 510, 814, 1147, 1286, 2816 |
| Hpy188III | TCNNGA | 6 cut(s) | 79, 161, 381, 440, 1406, 2783 |
| Hpy8I | GTNNAC | 7 cut(s) | 68, 320, 510, 814, 1147, 1286, 2816 |
| Hpy99I | CGWCG | 4 cut(s) | 69, 72, 131, 511 |
| HpyAV | CCTTC | 8 cut(s) | 209, 647, 923, 1545, 1555, 1674, 1895, 2613 |
| HpyCH4IV | ACGT | 3 cut(s) | 129, 404, 577 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 81, 258, 1624, 1770, 1913, 2468, 2698 |
| HpyF3I | CTNAG | 8 cut(s) | 142, 167, 441, 501, 560, 1256, 1272, 1812 |
| HpySE526I | ACGT | 3 cut(s) | 129, 404, 577 |
| HspAI | GCGC | 2 cut(s) | 696, 759 |
| Kpn2I | TCCGGA | 1 cut(s) | 160 |
| Ksp22I | TGATCA | 1 cut(s) | 1798 |
| Kzo9I | GATC | 6 cut(s) | 515, 622, 1067, 1339, 1798, 1861 |
| LmnI | GCTCC | 6 cut(s) | 7, 163, 466, 502, 1850, 2467 |
| Lsp1109I | GCAGC | 5 cut(s) | 148, 1900, 2447, 2583, 2710 |
| LweI | GCATC | 6 cut(s) | 865, 1439, 1489, 1860, 2647, 2651 |
| MaeI | CTAG | 8 cut(s) | 693, 888, 1242, 1349, 1604, 1917, 2145, 2478 |
| MaeII | ACGT | 3 cut(s) | 129, 404, 577 |
| MaeIII | GTNAC | 8 cut(s) | 563, 906, 1694, 1823, 2275, 2316, 2371, 2522 |
| MalI | GATC | 6 cut(s) | 517, 624, 1069, 1341, 1800, 1863 |
| MboI | GATC | 6 cut(s) | 515, 622, 1067, 1339, 1798, 1861 |
| MfeI | CAATTG | 2 cut(s) | 1179, 2732 |
| MhlI | GDGCHC | 3 cut(s) | 12, 168, 1164 |
| MlyI | GAGTC | 6 cut(s) | 578, 1190, 2023, 2062, 2172, 2773 |
| MmeI | TCCRAC | 1 cut(s) | 745 |
| Mph1103I | ATGCAT | 2 cut(s) | 1775, 2011 |
| MroI | TCCGGA | 1 cut(s) | 160 |
| MslI | CAYNNNNRTG | 4 cut(s) | 863, 1011, 1692, 2538 |
| MspI | CCGG | 5 cut(s) | 161, 513, 611, 1464, 2270 |
| MspR9I | CCNGG | 4 cut(s) | 1290, 1301, 1960, 2647 |
| MunI | CAATTG | 2 cut(s) | 1179, 2732 |
| Mva1269I | GAATGC | 2 cut(s) | 676, 1627 |
| MvaI | CCWGG | 4 cut(s) | 1290, 1301, 1960, 2647 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 81, 258, 1624, 1770, 1913, 2468, 2698 |
| NdeI | CATATG | 1 cut(s) | 1008 |
| NdeII | GATC | 6 cut(s) | 515, 622, 1067, 1339, 1798, 1861 |
| NheI | GCTAGC | 1 cut(s) | 1916 |
| NmuCI | GTSAC | 6 cut(s) | 906, 1694, 1823, 2275, 2316, 2371 |
| NsiI | ATGCAT | 2 cut(s) | 1775, 2011 |
| NspV | TTCGAA | 2 cut(s) | 106, 396 |
| PceI | AGGCCT | 1 cut(s) | 886 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1579 |
| PctI | GAATGC | 2 cut(s) | 676, 1627 |
| PfeI | GAWTC | 9 cut(s) | 45, 266, 767, 1362, 1467, 1885, 2665, 2710, 2724 |
| PflFI | GACNNNGTC | 1 cut(s) | 1229 |
| PinAI | ACCGGT | 1 cut(s) | 2269 |
| PkrI | GCNGC | 6 cut(s) | 138, 1664, 1915, 2437, 2598, 2700 |
| PleI | GAGTC | 6 cut(s) | 578, 1190, 2023, 2062, 2171, 2773 |
| PpsI | GAGTC | 6 cut(s) | 578, 1190, 2023, 2062, 2171, 2773 |
| PshBI | ATTAAT | 1 cut(s) | 414 |
| Psp124BI | GAGCTC | 1 cut(s) | 168 |
| Psp6I | CCWGG | 4 cut(s) | 1288, 1299, 1958, 2645 |
| PspFI | CCCAGC | 1 cut(s) | 2198 |
| PspGI | CCWGG | 4 cut(s) | 1288, 1299, 1958, 2645 |
| PspPI | GGNCC | 3 cut(s) | 437, 1529, 2170 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2381 |
| PsyI | GACNNNGTC | 1 cut(s) | 1229 |
| RsaI | GTAC | 6 cut(s) | 97, 156, 813, 1417, 2676, 2829 |
| RsaNI | GTAC | 6 cut(s) | 96, 155, 812, 1416, 2675, 2828 |
| RseI | CAYNNNNRTG | 4 cut(s) | 863, 1011, 1692, 2538 |
| SacI | GAGCTC | 1 cut(s) | 168 |
| SalI | GTCGAC | 2 cut(s) | 66, 508 |
| SatI | GCNGC | 6 cut(s) | 137, 1663, 1914, 2436, 2597, 2699 |
| Sau3AI | GATC | 6 cut(s) | 515, 622, 1067, 1339, 1798, 1861 |
| Sau96I | GGNCC | 3 cut(s) | 437, 1529, 2170 |
| SchI | GAGTC | 6 cut(s) | 578, 1190, 2023, 2062, 2172, 2773 |
| ScrFI | CCNGG | 4 cut(s) | 1290, 1301, 1960, 2647 |
| SduI | GDGCHC | 3 cut(s) | 12, 168, 1164 |
| SfaNI | GCATC | 6 cut(s) | 865, 1439, 1489, 1860, 2647, 2651 |
| SfcI | CTRYAG | 4 cut(s) | 600, 1650, 2118, 2466 |
| SfuI | TTCGAA | 2 cut(s) | 106, 396 |
| SgrDI | CGTCGACG | 1 cut(s) | 66 |
| SinI | GGWCC | 2 cut(s) | 437, 1529 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 863, 1011, 1692, 2538 |
| SmlI | CTYRAG | 2 cut(s) | 77, 2575 |
| SmoI | CTYRAG | 2 cut(s) | 77, 2575 |
| SseBI | AGGCCT | 1 cut(s) | 886 |
| SsiI | CCGC | 4 cut(s) | 1380, 1663, 1948, 2660 |
| SspI | AATATT | 1 cut(s) | 2799 |
| SspMI | CTAG | 8 cut(s) | 693, 888, 1242, 1349, 1604, 1917, 2145, 2478 |
| SstI | GAGCTC | 1 cut(s) | 168 |
| StuI | AGGCCT | 1 cut(s) | 886 |
| StyD4I | CCNGG | 4 cut(s) | 1288, 1299, 1958, 2645 |
| StyI | CCWWGG | 2 cut(s) | 1893, 2878 |
| TaiI | ACGT | 3 cut(s) | 132, 407, 580 |
| TaqI | TCGA | 7 cut(s) | 67, 106, 396, 509, 1357, 1365, 2683 |
| TatI | WGTACW | 3 cut(s) | 811, 1415, 2827 |
| TauI | GCSGC | 1 cut(s) | 1665 |
| TfiI | GAWTC | 9 cut(s) | 45, 266, 767, 1362, 1467, 1885, 2665, 2710, 2724 |
| TscAI | CASTG | 4 cut(s) | 125, 361, 1728, 2338 |
| TseFI | GTSAC | 6 cut(s) | 906, 1694, 1823, 2275, 2316, 2371 |
| TseI | GCWGC | 5 cut(s) | 136, 1913, 2435, 2596, 2698 |
| Tsp45I | GTSAC | 6 cut(s) | 906, 1694, 1823, 2275, 2316, 2371 |
| TspGWI | ACGGA | 1 cut(s) | 2221 |
| TspRI | CASTG | 4 cut(s) | 125, 361, 1728, 2338 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1229 |
| VpaK11BI | GGWCC | 2 cut(s) | 437, 1529 |
| VspI | ATTAAT | 1 cut(s) | 414 |
| XapI | RAATTY | 7 cut(s) | 108, 642, 942, 1124, 1190, 1706, 1999 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1013, 1673 |
| XmiI | GTMKAC | 3 cut(s) | 67, 509, 1285 |
| XspI | CTAG | 8 cut(s) | 693, 888, 1242, 1349, 1604, 1917, 2145, 2478 |
| Zsp2I | ATGCAT | 2 cut(s) | 1775, 2011 |