Rh3AG095000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002000
Physical Location & Seq
Forward (+)
7820184 .. 7830186
10003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG095000.1

Sequence Viewer

Length: 243 bp
ATGCAGGGACTCCAAAGATCAAAGTTACCCTTGCTTGAGCCAGCGAACATTGTAGGAGATGTTCTTAAATGGTACCCCACCTATGTCTATAAATGCTGTCAGCTTACTTCTGGAAGCATATTTCTTAAAGCAAAGAGTCTTGGGAGGCTTAAAGTCGATCTCGGGAAATCTTACCCAATTGGTGATTATGCGGCCAACAATGAGTGGGGGACCTTGCACAGGGCAGCACCATGGAACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.97

Weight (kDa)

9.43

Isoelectric Point (pI)

24.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 72
AciI CCGC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 192
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 219
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 224
Asp718I GGTACC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 210
BanI GGYRCC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 236
BisI GCNGC 2 cut(s) 192, 225
BlsI GCNGC 2 cut(s) 193, 226
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 3 cut(s) 74, 211, 236
BpuEI CTTGAG 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 236
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 161
BslFI GGGAC 2 cut(s) 21, 223
BslI CCNNNNNNNGG 1 cut(s) 219
BsmFI GGGAC 2 cut(s) 21, 223
BsnI GGCC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 161
Bsp143I GATC 2 cut(s) 17, 157
Bsp19I CCATGG 1 cut(s) 230
BspACI CCGC 1 cut(s) 191
BspANI GGCC 1 cut(s) 194
BspLI GGNNCC 3 cut(s) 74, 211, 236
BspT107I GGYRCC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 2 cut(s) 17, 157
BssT1I CCWWGG 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 230
BstENI CCTNNNNNAGG 1 cut(s) 217
BstKTI GATC 2 cut(s) 20, 160
BstMBI GATC 2 cut(s) 17, 157
BstV1I GCAGC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 231
CviJI RGCY 4 cut(s) 40, 103, 148, 194
CviKI_1 RGCY 4 cut(s) 40, 103, 148, 194
CviQI GTAC 1 cut(s) 73
DpnI GATC 2 cut(s) 19, 159
DpnII GATC 2 cut(s) 17, 157
EaeI YGGCCR 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 1 cut(s) 234
FaiI YATR 5 cut(s) 84, 90, 119, 189, 232
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 2 cut(s) 21, 223
FatI CATG 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 192, 225
Fsp4HI GCNGC 2 cut(s) 192, 225
GluI GCNGC 2 cut(s) 192, 225
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 1 cut(s) 234
HinfI GANTC 2 cut(s) 9, 136
HphI GGTGA 1 cut(s) 194
Hpy188III TCNNGA 2 cut(s) 111, 163
HpyCH4V TGCA 2 cut(s) 4, 217
Hsp92II CATG 1 cut(s) 234
KpnI GGTACC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 17, 157
LpnPI CCDG 3 cut(s) 54, 96, 205
Lsp1109I GCAGC 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 24
MalI GATC 2 cut(s) 19, 159
MboI GATC 2 cut(s) 17, 157
MfeI CAATTG 1 cut(s) 177
MluCI AATT 1 cut(s) 177
MlyI GAGTC 2 cut(s) 3, 145
MnlI CCTC 1 cut(s) 138
MseI TTAA 3 cut(s) 66, 126, 150
MunI CAATTG 1 cut(s) 177
NcoI CCATGG 1 cut(s) 230
NdeII GATC 2 cut(s) 17, 157
NlaIII CATG 1 cut(s) 234
NlaIV GGNNCC 3 cut(s) 74, 211, 236
PkrI GCNGC 2 cut(s) 193, 226
PleI GAGTC 2 cut(s) 3, 144
PpsI GAGTC 2 cut(s) 3, 144
PpuMI RGGWCCY 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 74, 211, 236
PspPI GGNCC 1 cut(s) 210
PspPPI RGGWCCY 1 cut(s) 210
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 66, 126, 150
SatI GCNGC 2 cut(s) 192, 225
Sau3AI GATC 2 cut(s) 17, 157
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 2 cut(s) 3, 145
SetI ASST 4 cut(s) 83, 105, 215, 240
SinI GGWCC 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 191
StyI CCWWGG 1 cut(s) 230
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 177
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 3 cut(s) 66, 126, 150
Tru9I TTAA 3 cut(s) 66, 126, 150
TseI GCWGC 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 210
XagI CCTNNNNNAGG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.