Rw3G008180

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002000
Physical Location & Seq
Forward (+)
7591989 .. 7593016
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008180.1

Sequence Viewer

Length: 864 bp
ATGGAGGAGCCCCAATTTGAAAAAGAAAAACCCTCCGAAACCCTAATCTCTCTCCCTCCTCACCGTCGACGAAGCCTCAAGAGCGAAACGCACCGTACTCTGCTTCGAATTCTATCTCACTGCTACGACGTGTTGCAGCACCCAGACCAAAATGTACCTCCGGAGCTCAATCAAGATAATGGAAGTAATGAATTGGGGGAAATAACTGCAAAAGAAGGAGGTAGGAATGTTGAATTGGTTGAGCCTGATAGTAGGAAGTGCGATGATTCGGCAGCTCAACAGGAATTGGTGGCTGTTGAGAGGTGTGATGGTAAGGGTTTACGAGAGAGAATTGGGCAGATAGAGGATTTCTTCAGTGAGGAAGGAAATGAGGAGTTGTCGGGACAGATGGACTTCGAAGATACGTTTGGGATTAATTTTGGAGATTTGGAGTTTGGTCCTGAGGAAATGCTGATGGATGAACTGGAGCAAATTGTGAAAGGAAATGATGACAATGCTCCTAAACTGTCGACCAGATCATTGGTTGAAAATGAGGGTGCAAACGATAAGGTTGAGTTGGTGAGTAACCAAGAACAACGTGATGACTCTCAACATAATGCTACAGTCAGACCGGAAAATGCAGATCAAGTTGTGATTGGTGAAATTCATAATGAAGGAGAGTGTAATGAATGCTCGCATTCCTTGTTGAAGACTAGCGCGTTGGATGTAGAGCCGATAATCCAACAGAAAGCAATGGAGACTTCTGTGTCTTCTGGTAGCGCAGAGGTATCTCTGATGATGATGGGATGGATGATAGATCAACCAATATGCTTTTGCATGATACAGCAAGGTGTGAGGAAAATAAGGTTAATGAATTTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

287

Amino Acids

32.33

Weight (kDa)

4.5

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 745
AccI GTMKAC 2 cut(s) 67, 509
AccII CGCG 1 cut(s) 698
AccIII TCCGGA 1 cut(s) 160
AcsI RAATTY 3 cut(s) 108, 642, 853
AcuI CTGAAG 1 cut(s) 337
AfaI GTAC 2 cut(s) 97, 156
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 5 cut(s) 20, 233, 527, 688, 859
AjiI CACGTC 1 cut(s) 130
AjuI GAANNNNNNNTTGG 4 cut(s) 218, 250, 390, 422
AluBI AGCT 2 cut(s) 166, 275
AluI AGCT 2 cut(s) 166, 275
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 731
Aor13HI TCCGGA 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 136, 272
ApoI RAATTY 3 cut(s) 108, 642, 853
AseI ATTAAT 1 cut(s) 414
AspLEI GCGC 2 cut(s) 698, 761
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 3 cut(s) 53, 571, 650
AsuII TTCGAA 2 cut(s) 106, 396
AvaII GGWCC 1 cut(s) 437
AxyI CCTNAGG 1 cut(s) 441
BanII GRGCYC 2 cut(s) 12, 168
BbsI GAAGAC 2 cut(s) 695, 741
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 148, 284
BccI CCATC 5 cut(s) 302, 382, 448, 775, 780
BcoDI GTCTC 1 cut(s) 731
BfaI CTAG 1 cut(s) 693
BfmI CTRYAG 1 cut(s) 600
BisI GCNGC 2 cut(s) 137, 273
BlsI GCNGC 2 cut(s) 138, 274
Bme18I GGWCC 1 cut(s) 437
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 9
BpiI GAAGAC 2 cut(s) 695, 741
BpmI CTGGAG 1 cut(s) 485
Bpu14I TTCGAA 2 cut(s) 106, 396
BpuEI CTTGAG 1 cut(s) 62
BsaWI WCCGGW 2 cut(s) 160, 610
Bse1I ACTGG 1 cut(s) 468
Bse21I CCTNAGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 160
BseGI GGATG 4 cut(s) 463, 709, 791, 795
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 3 cut(s) 20, 48, 386
BseXI GCAGC 2 cut(s) 148, 284
Bsh1236I CGCG 1 cut(s) 698
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 2 cut(s) 161, 611
BslFI GGGAC 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 731
BsmFI GGGAC 1 cut(s) 396
BsmI GAATGC 2 cut(s) 674, 676
Bsp119I TTCGAA 2 cut(s) 106, 396
Bsp1286I GDGCHC 2 cut(s) 12, 168
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 3 cut(s) 515, 622, 796
BspCNI CTCAG 1 cut(s) 433
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 698
BspLI GGNNCC 1 cut(s) 9
BspT104I TTCGAA 2 cut(s) 106, 396
BsrDI GCAATG 1 cut(s) 738
BsrI ACTGG 1 cut(s) 468
BssMI GATC 3 cut(s) 515, 622, 796
Bst4CI ACNGT 4 cut(s) 65, 95, 507, 604
BstBI TTCGAA 2 cut(s) 106, 396
BstC8I GCNNGC 1 cut(s) 674
BstDEI CTNAG 1 cut(s) 441
BstF5I GGATG 4 cut(s) 463, 709, 791, 795
BstFNI CGCG 1 cut(s) 698
BstHHI GCGC 2 cut(s) 698, 761
BstKTI GATC 3 cut(s) 518, 625, 799
BstMAI GTCTC 1 cut(s) 731
BstMBI GATC 3 cut(s) 515, 622, 796
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 600
BstUI CGCG 1 cut(s) 698
BstV1I GCAGC 2 cut(s) 148, 284
BstV2I GAAGAC 2 cut(s) 695, 741
BstXI CCANNNNNNTGG 1 cut(s) 520
Bsu36I CCTNAGG 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 4 cut(s) 463, 709, 791, 795
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 361
Cac8I GCNNGC 1 cut(s) 674
CfoI GCGC 2 cut(s) 698, 761
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 2 cut(s) 96, 155
CviAII CATG 1 cut(s) 817
CviJI RGCY 7 cut(s) 10, 75, 166, 244, 275, 293, 712
CviKI_1 RGCY 7 cut(s) 10, 75, 166, 244, 275, 293, 712
CviQI GTAC 2 cut(s) 96, 155
DdeI CTNAG 1 cut(s) 441
DpnI GATC 3 cut(s) 517, 624, 798
DpnII GATC 3 cut(s) 515, 622, 796
DrdI GACNNNNNNGTC 1 cut(s) 745
DseDI GACNNNNNNGTC 1 cut(s) 745
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 12, 168
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 337
Eco81I CCTNAGG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 12, 168
FaeI CATG 1 cut(s) 820
FaiI YATR 4 cut(s) 594, 648, 808, 818
FaqI GGGAC 1 cut(s) 396
FatI CATG 1 cut(s) 816
FblI GTMKAC 2 cut(s) 67, 509
Fnu4HI GCNGC 2 cut(s) 137, 273
FokI GGATG 4 cut(s) 470, 716, 798, 802
FriOI GRGCYC 2 cut(s) 12, 168
Fsp4HI GCNGC 2 cut(s) 137, 273
FspBI CTAG 1 cut(s) 693
GlaI GCGC 2 cut(s) 697, 760
GluI GCNGC 2 cut(s) 137, 273
GsuI CTGGAG 1 cut(s) 485
HapII CCGG 2 cut(s) 161, 611
HhaI GCGC 2 cut(s) 698, 761
Hin1II CATG 1 cut(s) 820
Hin6I GCGC 2 cut(s) 696, 759
HinP1I GCGC 2 cut(s) 696, 759
HincII GTYRAC 2 cut(s) 68, 510
HindII GTYRAC 2 cut(s) 68, 510
HinfI GANTC 2 cut(s) 266, 584
HpaII CCGG 2 cut(s) 161, 611
HphI GGTGA 3 cut(s) 53, 571, 650
Hpy166II GTNNAC 3 cut(s) 68, 320, 510
Hpy188I TCNGA 3 cut(s) 37, 608, 774
Hpy188III TCNNGA 5 cut(s) 79, 161, 173, 381, 440
Hpy8I GTNNAC 3 cut(s) 68, 320, 510
Hpy99I CGWCG 3 cut(s) 69, 72, 131
HpyAV CCTTC 3 cut(s) 209, 356, 647
HpyCH4III ACNGT 4 cut(s) 65, 95, 507, 604
HpyCH4IV ACGT 3 cut(s) 129, 404, 577
HpyCH4V TGCA 5 cut(s) 136, 209, 539, 620, 816
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 3 cut(s) 129, 404, 577
Hsp92II CATG 1 cut(s) 820
HspAI GCGC 2 cut(s) 696, 759
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 3 cut(s) 515, 622, 796
LmnI GCTCC 4 cut(s) 7, 163, 466, 502
LpnPI CCDG 9 cut(s) 156, 174, 258, 266, 449, 453, 526, 624, 738
Lsp1109I GCAGC 2 cut(s) 148, 284
MaeI CTAG 1 cut(s) 693
MaeII ACGT 3 cut(s) 129, 404, 577
MaeIII GTNAC 1 cut(s) 563
MalI GATC 3 cut(s) 517, 624, 798
MboI GATC 3 cut(s) 515, 622, 796
MboII GAAGA 4 cut(s) 343, 410, 700, 741
MhlI GDGCHC 2 cut(s) 12, 168
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 681, 745
MroI TCCGGA 1 cut(s) 160
MseI TTAA 2 cut(s) 414, 848
MspI CCGG 2 cut(s) 161, 611
Mva1269I GAATGC 2 cut(s) 674, 676
MvnI CGCG 1 cut(s) 698
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 3 cut(s) 515, 622, 796
NlaIII CATG 1 cut(s) 820
NlaIV GGNNCC 1 cut(s) 9
NspV TTCGAA 2 cut(s) 106, 396
PctI GAATGC 2 cut(s) 674, 676
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 2 cut(s) 138, 274
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 437
RsaI GTAC 2 cut(s) 97, 156
RsaNI GTAC 2 cut(s) 96, 155
SacI GAGCTC 1 cut(s) 168
SalI GTCGAC 2 cut(s) 66, 508
SaqAI TTAA 2 cut(s) 414, 848
SatI GCNGC 2 cut(s) 137, 273
Sau3AI GATC 3 cut(s) 515, 622, 796
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 578
SduI GDGCHC 2 cut(s) 12, 168
SfcI CTRYAG 1 cut(s) 600
SfuI TTCGAA 2 cut(s) 106, 396
SgrDI CGTCGACG 1 cut(s) 66
SinI GGWCC 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SspMI CTAG 1 cut(s) 693
SstI GAGCTC 1 cut(s) 168
TaaI ACNGT 4 cut(s) 65, 95, 507, 604
TaiI ACGT 3 cut(s) 132, 407, 580
TaqI TCGA 4 cut(s) 67, 106, 396, 509
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 414, 848
Tru9I TTAA 2 cut(s) 414, 848
TscAI CASTG 2 cut(s) 125, 361
TseI GCWGC 2 cut(s) 136, 272
TspDTI ATGAA 5 cut(s) 204, 474, 635, 666, 681
TspRI CASTG 2 cut(s) 125, 361
VpaK11BI GGWCC 1 cut(s) 437
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 3 cut(s) 108, 642, 853
XmiI GTMKAC 2 cut(s) 67, 509
XspI CTAG 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.