Rh3DG098800

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002000
Physical Location & Seq
Forward (+)
7835545 .. 7853018
17474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG098800.1

Sequence Viewer

Length: 1152 bp
ATGGAGGAGCCCCAATTTGAAAAAGAAAAACCCTCCGAAACCCTAATCTCTCTCCCTCCTCACCGTCGACGAAGCCTCAAGAGCGAAACGCACCGTACTCTGCTTCGAATTCTATCTCACTGCTACGACGTGTTGCAGCACCCAGACCAAAATGTACCTCCGGAGCTCAATCAAGATAATGGAAGTAATGAATTGGGGGAAACAACTGCAAAAGAAGGAGGTAGGAATGTTGAATTGGTTGAGCCTGATAGTAGGAAGTGCGATGATTCGGCAGCTCAACAGGAATTGGTGGCTGTTGAGAGGTGTGATGGTAAGGGTTTACGAGAGAGAATTGGGCAGATAGAGGATTTCTTCAGTGAGGAAGGAAATGAGGAGTTGTCGGGACAGATGGACTTCGAAGATACGTTTGGGATTAATTTTGGAGATTTGGAGTTTGGTCCTGAGGAAATGCTGATGGATGAACTGGAGCAAATTGTGAAAGGAAATGATGACAATGCTCCTAAACTGTCGACCAGATCATTGGTTGAAAATGAGGGTGCAAACGATAAGGTTGAGTTGCTGAGTAACCAAGAACAACGTGATGACTCTCAACATAATGCTACAGTCAGACCGGAAAATGCAGATCAAGTTGTGATTGGTGAAATTCATAATGAAGGAGAGTGTAATGAATGCTCGCATTCCTTGTTGAAGACTAGCGCGTTGGATGTAGAGCCGATAATCCAACAGAAAGCAATGGAGACTTCTGTGTCTTCTGGTAGCGCAGAGGTATCTCTGATGATGATGGGATGGATGATAGATCAACCAATATGCTTTTGCATGATACAGCAAGGTGTGAGGAAAATAAGAGCTATTATAGTCAATGGAAAGAGAATGATTCTCATTTCAGGGTCTATTCACTACCCCAGAAGCACACATGAGATGTGGCCGGATTTGATTCAGAAGGCCAAAGATGGAGGCTTGGATGTGATACAGACTTATATGTTCTGGAATGGGCATGAACCAAGCCCAGGAAAATATTATTTTGTGATCCAGACTTATATGATTTGGTCAAGTTCATCAAGCTGGCTCAACTACATGGCCTATATGTTCATCTCCGCATTGGTCCTTATATTTGTGCTGAATGGAACTTTGAAAGATTCCCTGTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

383

Amino Acids

43.29

Weight (kDa)

4.65

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 284 - 341 2.6e-22 Glycosyl hydrolases family 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 745
AccI GTMKAC 2 cut(s) 67, 509
AccII CGCG 1 cut(s) 698
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 1 cut(s) 1095
AclWI GGATC 1 cut(s) 1021
AcoI YGGCCR 1 cut(s) 923
AcsI RAATTY 2 cut(s) 108, 642
AcuI CTGAAG 1 cut(s) 337
AfaI GTAC 2 cut(s) 97, 156
AfiI CCNNNNNNNGG 1 cut(s) 1007
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 5 cut(s) 20, 233, 527, 688, 1132
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 1006
AjuI GAANNNNNNNTTGG 4 cut(s) 218, 250, 390, 422
AluBI AGCT 4 cut(s) 166, 275, 848, 1062
AluI AGCT 4 cut(s) 166, 275, 848, 1062
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 731
AlwI GGATC 1 cut(s) 1021
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 3 cut(s) 923, 942, 1077
ApeKI GCWGC 2 cut(s) 136, 272
ApoI RAATTY 2 cut(s) 108, 642
AseI ATTAAT 1 cut(s) 414
AspLEI GCGC 2 cut(s) 698, 761
AspS9I GGNCC 2 cut(s) 437, 1102
AsuHPI GGTGA 2 cut(s) 53, 650
AsuII TTCGAA 2 cut(s) 106, 396
AvaII GGWCC 2 cut(s) 437, 1102
AxyI CCTNAGG 1 cut(s) 441
BanII GRGCYC 2 cut(s) 12, 168
BbsI GAAGAC 2 cut(s) 695, 741
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 148, 284
BccI CCATC 6 cut(s) 302, 382, 448, 775, 780, 944
BciT130I CCWGG 1 cut(s) 1008
BcoDI GTCTC 1 cut(s) 731
BfaI CTAG 1 cut(s) 693
BfmI CTRYAG 1 cut(s) 600
BisI GCNGC 2 cut(s) 137, 273
BlsI GCNGC 2 cut(s) 138, 274
Bme1390I CCNGG 1 cut(s) 1008
Bme18I GGWCC 2 cut(s) 437, 1102
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 437, 1102
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 1008
BpiI GAAGAC 2 cut(s) 695, 741
BpmI CTGGAG 1 cut(s) 485
Bpu14I TTCGAA 2 cut(s) 106, 396
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 1006
BsaWI WCCGGW 2 cut(s) 160, 610
Bsc4I CCNNNNNNNGG 1 cut(s) 1007
Bse1I ACTGG 1 cut(s) 468
Bse21I CCTNAGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 1008
BseDI CCNNGG 1 cut(s) 1006
BseGI GGATG 5 cut(s) 463, 709, 791, 795, 967
BseLI CCNNNNNNNGG 1 cut(s) 1007
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 432, 551
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 3 cut(s) 20, 48, 386
BseXI GCAGC 2 cut(s) 148, 284
Bsh1236I CGCG 1 cut(s) 698
BshFI GGCC 3 cut(s) 925, 944, 1079
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 3 cut(s) 161, 611, 926
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 1 cut(s) 1007
BsmAI GTCTC 1 cut(s) 731
BsmFI GGGAC 1 cut(s) 396
BsmI GAATGC 2 cut(s) 674, 676
BsnI GGCC 3 cut(s) 925, 944, 1079
Bsp119I TTCGAA 2 cut(s) 106, 396
Bsp1286I GDGCHC 2 cut(s) 12, 168
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 4 cut(s) 515, 622, 796, 1026
BspACI CCGC 1 cut(s) 1095
BspANI GGCC 3 cut(s) 925, 944, 1079
BspCNI CTCAG 2 cut(s) 433, 552
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 698
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 1021
BspT104I TTCGAA 2 cut(s) 106, 396
BsrDI GCAATG 1 cut(s) 738
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 1006
BssMI GATC 4 cut(s) 515, 622, 796, 1026
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 4 cut(s) 65, 95, 507, 604
BstBI TTCGAA 2 cut(s) 106, 396
BstC8I GCNNGC 2 cut(s) 674, 1064
BstDEI CTNAG 2 cut(s) 441, 560
BstF5I GGATG 5 cut(s) 463, 709, 791, 795, 967
BstFNI CGCG 1 cut(s) 698
BstHHI GCGC 2 cut(s) 698, 761
BstKTI GATC 4 cut(s) 518, 625, 799, 1029
BstMAI GTCTC 1 cut(s) 731
BstMBI GATC 4 cut(s) 515, 622, 796, 1026
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 1008
BstSCI CCNGG 1 cut(s) 1006
BstSFI CTRYAG 1 cut(s) 600
BstUI CGCG 1 cut(s) 698
BstV1I GCAGC 2 cut(s) 148, 284
BstV2I GAAGAC 2 cut(s) 695, 741
BstXI CCANNNNNNTGG 1 cut(s) 520
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 3 cut(s) 925, 944, 1079
BtgZI GCGATG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 5 cut(s) 463, 709, 791, 795, 967
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 361
Cac8I GCNNGC 2 cut(s) 674, 1064
CfoI GCGC 2 cut(s) 698, 761
Cfr13I GGNCC 2 cut(s) 437, 1102
Csp6I GTAC 2 cut(s) 96, 155
CviAII CATG 4 cut(s) 817, 914, 995, 1075
CviQI GTAC 2 cut(s) 96, 155
DdeI CTNAG 2 cut(s) 441, 560
DpnI GATC 4 cut(s) 517, 624, 798, 1028
DpnII GATC 4 cut(s) 515, 622, 796, 1026
DrdI GACNNNNNNGTC 1 cut(s) 745
DseDI GACNNNNNNGTC 1 cut(s) 745
EaeI YGGCCR 1 cut(s) 923
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 12, 168
Eco47I GGWCC 2 cut(s) 437, 1102
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 337
Eco81I CCTNAGG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 1006
EcoT38I GRGCYC 2 cut(s) 12, 168
FaeI CATG 4 cut(s) 820, 917, 998, 1078
FaqI GGGAC 1 cut(s) 396
FatI CATG 4 cut(s) 816, 913, 994, 1074
FblI GTMKAC 2 cut(s) 67, 509
Fnu4HI GCNGC 2 cut(s) 137, 273
FokI GGATG 5 cut(s) 470, 716, 798, 802, 974
FriOI GRGCYC 2 cut(s) 12, 168
Fsp4HI GCNGC 2 cut(s) 137, 273
FspBI CTAG 1 cut(s) 693
GlaI GCGC 2 cut(s) 697, 760
GluI GCNGC 2 cut(s) 137, 273
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 3 cut(s) 925, 944, 1079
HapII CCGG 3 cut(s) 161, 611, 926
HhaI GCGC 2 cut(s) 698, 761
Hin1II CATG 4 cut(s) 820, 917, 998, 1078
Hin6I GCGC 2 cut(s) 696, 759
HinP1I GCGC 2 cut(s) 696, 759
HincII GTYRAC 2 cut(s) 68, 510
HindII GTYRAC 2 cut(s) 68, 510
HinfI GANTC 5 cut(s) 266, 584, 874, 934, 1136
HpaII CCGG 3 cut(s) 161, 611, 926
HphI GGTGA 2 cut(s) 53, 650
Hpy166II GTNNAC 3 cut(s) 68, 320, 510
Hpy188I TCNGA 4 cut(s) 37, 608, 774, 939
Hpy188III TCNNGA 7 cut(s) 79, 161, 173, 381, 440, 985, 1030
Hpy8I GTNNAC 3 cut(s) 68, 320, 510
Hpy99I CGWCG 3 cut(s) 69, 72, 131
HpyAV CCTTC 4 cut(s) 209, 356, 647, 934
HpyCH4III ACNGT 4 cut(s) 65, 95, 507, 604
HpyCH4IV ACGT 3 cut(s) 129, 404, 577
HpyCH4V TGCA 5 cut(s) 136, 209, 539, 620, 816
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 441, 560
HpySE526I ACGT 3 cut(s) 129, 404, 577
Hsp92II CATG 4 cut(s) 820, 917, 998, 1078
HspAI GCGC 2 cut(s) 696, 759
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 4 cut(s) 515, 622, 796, 1026
LmnI GCTCC 4 cut(s) 7, 163, 466, 502
Lsp1109I GCAGC 2 cut(s) 148, 284
MaeI CTAG 1 cut(s) 693
MaeII ACGT 3 cut(s) 129, 404, 577
MaeIII GTNAC 1 cut(s) 563
MalI GATC 4 cut(s) 517, 624, 798, 1028
MboI GATC 4 cut(s) 515, 622, 796, 1026
MboII GAAGA 4 cut(s) 343, 410, 700, 741
MhlI GDGCHC 2 cut(s) 12, 168
MluCI AATT 9 cut(s) 14, 108, 191, 233, 284, 330, 415, 471, 642
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 681, 745
MroI TCCGGA 1 cut(s) 160
MseI TTAA 1 cut(s) 414
MspI CCGG 3 cut(s) 161, 611, 926
MspR9I CCNGG 1 cut(s) 1008
Mva1269I GAATGC 2 cut(s) 674, 676
MvaI CCWGG 1 cut(s) 1008
MvnI CGCG 1 cut(s) 698
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 4 cut(s) 515, 622, 796, 1026
NlaIII CATG 4 cut(s) 820, 917, 998, 1078
NlaIV GGNNCC 1 cut(s) 9
NspV TTCGAA 2 cut(s) 106, 396
PctI GAATGC 2 cut(s) 674, 676
PfeI GAWTC 4 cut(s) 266, 874, 934, 1136
PkrI GCNGC 2 cut(s) 138, 274
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 1006
PspGI CCWGG 1 cut(s) 1006
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 2 cut(s) 437, 1102
RsaI GTAC 2 cut(s) 97, 156
RsaNI GTAC 2 cut(s) 96, 155
SacI GAGCTC 1 cut(s) 168
SalI GTCGAC 2 cut(s) 66, 508
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 2 cut(s) 137, 273
Sau3AI GATC 4 cut(s) 515, 622, 796, 1026
Sau96I GGNCC 2 cut(s) 437, 1102
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 1 cut(s) 1008
SduI GDGCHC 2 cut(s) 12, 168
SfcI CTRYAG 1 cut(s) 600
SfuI TTCGAA 2 cut(s) 106, 396
SgrDI CGTCGACG 1 cut(s) 66
SinI GGWCC 2 cut(s) 437, 1102
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 9 cut(s) 14, 108, 191, 233, 284, 330, 415, 471, 642
SsiI CCGC 1 cut(s) 1095
SspI AATATT 1 cut(s) 1016
SspMI CTAG 1 cut(s) 693
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 1006
TaaI ACNGT 4 cut(s) 65, 95, 507, 604
TaiI ACGT 3 cut(s) 132, 407, 580
TaqI TCGA 4 cut(s) 67, 106, 396, 509
TasI AATT 9 cut(s) 14, 108, 191, 233, 284, 330, 415, 471, 642
TfiI GAWTC 4 cut(s) 266, 874, 934, 1136
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 125, 361
TseI GCWGC 2 cut(s) 136, 272
TspDTI ATGAA 8 cut(s) 204, 474, 635, 666, 681, 1011, 1044, 1078
TspRI CASTG 2 cut(s) 125, 361
VpaK11BI GGWCC 2 cut(s) 437, 1102
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 2 cut(s) 108, 642
XmiI GTMKAC 2 cut(s) 67, 509
XspI CTAG 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.