Rh3CG099300

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002000
Physical Location & Seq
Forward (+)
7810943 .. 7830186
19244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG099300.1

Sequence Viewer

Length: 939 bp
ATGGAGGAGCCCCAATTTGAAAAAGAAAAACCCTCCGAAACCCTAATCTCTCTCCCTCCTCACCGTCGACGAAGCCTCAACAGCGAAACGCACCGTACTCTGCTTCGAATTCTATCTCACTGCTACGACGTGTTGCAGCACCCAGACCAAAATGTACATCCGGAGCTCAATCAAGATAATGGGAGTAATGAATTGGGGAAACAACTGCAAAAGAAGGAGGGTTTACGAGAGAGAATTGGGCAGATAGAGGATTTCTTCAGTGAGGAAGGAAATGAGGAGTTGTCGGGACAGATGGACTTCGAAGATACGTTTGGGATTAATTTTGGAGATTTGGAGTTTGGTCCTGAGGAAATGCTGATGGATGAACTGGAGCAAATTGTGAAAGGAAATGATGACAATGCTCCTAAACTGTCGACCGGATCATTGGTTGAAAATGAGGGTGCAAACGATAAGGTTGAGTTGCTGAGTAACCAAGAACAACGTGATGACTCTCAACATAATGCTACAGTCAGACCGGAAAATGCAGATCAAGTTGTGATTGGTGAAATTCATAATGAAGGAGAGTGTAATGAATGCTCGCATTCCTTGTTGAAGACTAGCGCGTTGGATGTAGAGCCGATAATCCAACAGAAAGCAATGGAGACTTCTGTGTCTTCTGGTAGCGCAGAGGTATCTCTGATGATGATGGGATGGATGATAGATCAACCAATATGCTTTTGCATGATACAGCAAGGTGTGAGGAAAATAAGCAACTCTGGCGGTTCGACATCGCCGCGAAAACCAACGAGGAGGTTGCCAGGATTCGATTGGTTTGATTTGCTTCTCCTATCATCCGATCCCGCTGAACTAGTCGATCTCGGGAAATCTTACCCAATTGGTGATTATGCGGCCAACAATGAGTGGGGGACCTTGCACAGGGCAGCACCATGGAACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

312

Amino Acids

35.05

Weight (kDa)

4.56

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 649
AccI GTMKAC 2 cut(s) 67, 413
AccII CGCG 2 cut(s) 602, 775
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 4 cut(s) 759, 773, 840, 887
AclWI GGATC 2 cut(s) 427, 830
AcoI YGGCCR 1 cut(s) 888
AcsI RAATTY 2 cut(s) 108, 546
AcuI CTGAAG 1 cut(s) 241
AfaI GTAC 2 cut(s) 97, 156
AfiI CCNNNNNNNGG 1 cut(s) 915
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 3 cut(s) 20, 431, 592
AhlI ACTAGT 1 cut(s) 847
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 796
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 2 cut(s) 427, 830
Ama87I CYCGRG 1 cut(s) 857
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 1 cut(s) 888
ApeKI GCWGC 2 cut(s) 136, 920
ApoI RAATTY 2 cut(s) 108, 546
AseI ATTAAT 1 cut(s) 318
AspLEI GCGC 2 cut(s) 602, 665
AspS9I GGNCC 2 cut(s) 341, 906
AsuHPI GGTGA 3 cut(s) 53, 554, 890
AsuII TTCGAA 2 cut(s) 106, 300
AvaI CYCGRG 1 cut(s) 857
AvaII GGWCC 2 cut(s) 341, 906
AxyI CCTNAGG 1 cut(s) 345
BanII GRGCYC 2 cut(s) 12, 168
BbsI GAAGAC 2 cut(s) 599, 645
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 148, 932
BccI CCATC 4 cut(s) 286, 352, 679, 684
BcgI CGANNNNNNTGC 2 cut(s) 775, 809
BciT130I CCWGG 1 cut(s) 798
BcoDI GTCTC 1 cut(s) 635
BcuI ACTAGT 1 cut(s) 847
BfaI CTAG 2 cut(s) 597, 848
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 4 cut(s) 137, 773, 888, 921
BlsI GCNGC 4 cut(s) 138, 774, 889, 922
Bme1390I CCNGG 1 cut(s) 798
Bme18I GGWCC 2 cut(s) 341, 906
BmeT110I CYCGRG 1 cut(s) 857
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 341, 906
BmiI GGNNCC 3 cut(s) 9, 907, 932
BmrFI CCNGG 1 cut(s) 798
BpiI GAAGAC 2 cut(s) 599, 645
BpmI CTGGAG 1 cut(s) 389
Bpu14I TTCGAA 2 cut(s) 106, 300
BsaJI CCNNGG 1 cut(s) 926
BsaWI WCCGGW 3 cut(s) 160, 416, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 915
Bse1I ACTGG 1 cut(s) 372
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 642
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 798
BseDI CCNNGG 1 cut(s) 926
BseGI GGATG 6 cut(s) 157, 367, 613, 695, 699, 830
BseLI CCNNNNNNNGG 1 cut(s) 915
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 2 cut(s) 336, 455
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 4 cut(s) 20, 48, 290, 802
BseXI GCAGC 2 cut(s) 148, 932
Bsh1236I CGCG 2 cut(s) 602, 775
Bsh1285I CGRYCG 1 cut(s) 417
BshFI GGCC 1 cut(s) 890
BsiEI CGRYCG 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 857
BsiSI CCGG 3 cut(s) 161, 417, 515
BslFI GGGAC 2 cut(s) 300, 919
BslI CCNNNNNNNGG 1 cut(s) 915
BsmAI GTCTC 1 cut(s) 635
BsmFI GGGAC 2 cut(s) 300, 919
BsmI GAATGC 2 cut(s) 578, 580
BsnI GGCC 1 cut(s) 890
BsoBI CYCGRG 1 cut(s) 857
Bsp119I TTCGAA 2 cut(s) 106, 300
Bsp1286I GDGCHC 2 cut(s) 12, 168
Bsp13I TCCGGA 1 cut(s) 160
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 5 cut(s) 419, 526, 700, 835, 853
Bsp19I CCATGG 1 cut(s) 926
BspACI CCGC 4 cut(s) 759, 773, 840, 887
BspANI GGCC 1 cut(s) 890
BspCNI CTCAG 2 cut(s) 337, 456
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 2 cut(s) 602, 775
BspLI GGNNCC 3 cut(s) 9, 907, 932
BspPI GGATC 2 cut(s) 427, 830
BspT104I TTCGAA 2 cut(s) 106, 300
BsrDI GCAATG 1 cut(s) 642
BsrGI TGTACA 1 cut(s) 154
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 926
BssMI GATC 5 cut(s) 419, 526, 700, 835, 853
BssT1I CCWWGG 1 cut(s) 926
Bst2UI CCWGG 1 cut(s) 798
Bst4CI ACNGT 4 cut(s) 65, 95, 411, 508
BstAUI TGTACA 1 cut(s) 154
BstBI TTCGAA 2 cut(s) 106, 300
BstC8I GCNNGC 1 cut(s) 578
BstDEI CTNAG 2 cut(s) 345, 464
BstDSI CCRYGG 1 cut(s) 926
BstENI CCTNNNNNAGG 1 cut(s) 913
BstF5I GGATG 6 cut(s) 157, 367, 613, 695, 699, 830
BstFNI CGCG 2 cut(s) 602, 775
BstHHI GCGC 2 cut(s) 602, 665
BstKTI GATC 5 cut(s) 422, 529, 703, 838, 856
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 5 cut(s) 419, 526, 700, 835, 853
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 2 cut(s) 81, 756
BstNI CCWGG 1 cut(s) 798
BstSCI CCNGG 1 cut(s) 796
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 2 cut(s) 602, 775
BstV1I GCAGC 2 cut(s) 148, 932
BstV2I GAAGAC 2 cut(s) 599, 645
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 1 cut(s) 890
BtgI CCRYGG 1 cut(s) 926
BtgZI GCGATG 1 cut(s) 753
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 6 cut(s) 157, 367, 613, 695, 699, 830
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 265
Cac8I GCNNGC 1 cut(s) 578
CfoI GCGC 2 cut(s) 602, 665
Cfr13I GGNCC 2 cut(s) 341, 906
Csp6I GTAC 2 cut(s) 96, 155
CviAII CATG 2 cut(s) 721, 927
CviJI RGCY 5 cut(s) 10, 75, 166, 616, 890
CviKI_1 RGCY 5 cut(s) 10, 75, 166, 616, 890
CviQI GTAC 2 cut(s) 96, 155
DdeI CTNAG 2 cut(s) 345, 464
DpnI GATC 5 cut(s) 421, 528, 702, 837, 855
DpnII GATC 5 cut(s) 419, 526, 700, 835, 853
DrdI GACNNNNNNGTC 1 cut(s) 649
DseDI GACNNNNNNGTC 1 cut(s) 649
EaeI YGGCCR 1 cut(s) 888
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 926
Eco24I GRGCYC 2 cut(s) 12, 168
Eco47I GGWCC 2 cut(s) 341, 906
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 241
Eco81I CCTNAGG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 857
EcoICRI GAGCTC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 913
EcoO109I RGGNCCY 1 cut(s) 906
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 796
EcoT14I CCWWGG 1 cut(s) 926
EcoT38I GRGCYC 2 cut(s) 12, 168
ErhI CCWWGG 1 cut(s) 926
FaeI CATG 2 cut(s) 724, 930
FaiI YATR 6 cut(s) 498, 552, 712, 722, 885, 928
FaqI GGGAC 2 cut(s) 300, 919
FatI CATG 2 cut(s) 720, 926
FauI CCCGC 1 cut(s) 847
FblI GTMKAC 2 cut(s) 67, 413
Fnu4HI GCNGC 4 cut(s) 137, 773, 888, 921
FokI GGATG 6 cut(s) 144, 374, 620, 702, 706, 817
FriOI GRGCYC 2 cut(s) 12, 168
Fsp4HI GCNGC 4 cut(s) 137, 773, 888, 921
FspBI CTAG 2 cut(s) 597, 848
GlaI GCGC 2 cut(s) 601, 664
GluI GCNGC 4 cut(s) 137, 773, 888, 921
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 1 cut(s) 890
HapII CCGG 3 cut(s) 161, 417, 515
HhaI GCGC 2 cut(s) 602, 665
Hin1II CATG 2 cut(s) 724, 930
Hin6I GCGC 2 cut(s) 600, 663
HinP1I GCGC 2 cut(s) 600, 663
HincII GTYRAC 2 cut(s) 68, 414
HindII GTYRAC 2 cut(s) 68, 414
HinfI GANTC 2 cut(s) 488, 801
HpaII CCGG 3 cut(s) 161, 417, 515
HphI GGTGA 3 cut(s) 53, 554, 890
Hpy166II GTNNAC 3 cut(s) 68, 224, 414
Hpy188I TCNGA 4 cut(s) 37, 512, 678, 835
Hpy188III TCNNGA 5 cut(s) 161, 173, 285, 344, 859
Hpy8I GTNNAC 3 cut(s) 68, 224, 414
Hpy99I CGWCG 3 cut(s) 69, 72, 131
HpyAV CCTTC 3 cut(s) 208, 260, 551
HpyCH4III ACNGT 4 cut(s) 65, 95, 411, 508
HpyCH4IV ACGT 3 cut(s) 129, 308, 481
HpyCH4V TGCA 6 cut(s) 136, 208, 443, 524, 720, 913
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 756
HpyF3I CTNAG 2 cut(s) 345, 464
HpySE526I ACGT 3 cut(s) 129, 308, 481
Hsp92II CATG 2 cut(s) 724, 930
HspAI GCGC 2 cut(s) 600, 663
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 5 cut(s) 419, 526, 700, 835, 853
LmnI GCTCC 4 cut(s) 7, 163, 370, 406
Lsp1109I GCAGC 2 cut(s) 148, 932
MaeI CTAG 2 cut(s) 597, 848
MaeII ACGT 3 cut(s) 129, 308, 481
MaeIII GTNAC 1 cut(s) 467
MalI GATC 5 cut(s) 421, 528, 702, 837, 855
MboI GATC 5 cut(s) 419, 526, 700, 835, 853
MboII GAAGA 4 cut(s) 247, 314, 604, 645
MfeI CAATTG 1 cut(s) 873
MhlI GDGCHC 2 cut(s) 12, 168
MluCI AATT 8 cut(s) 14, 108, 191, 234, 319, 375, 546, 873
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 2 cut(s) 585, 649
MroI TCCGGA 1 cut(s) 160
MseI TTAA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 842
MspI CCGG 3 cut(s) 161, 417, 515
MspR9I CCNGG 1 cut(s) 798
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 2 cut(s) 578, 580
MvaI CCWGG 1 cut(s) 798
MvnI CGCG 2 cut(s) 602, 775
MwoI GCNNNNNNNGC 2 cut(s) 81, 756
NcoI CCATGG 1 cut(s) 926
NdeII GATC 5 cut(s) 419, 526, 700, 835, 853
NlaIII CATG 2 cut(s) 724, 930
NlaIV GGNNCC 3 cut(s) 9, 907, 932
NspV TTCGAA 2 cut(s) 106, 300
PctI GAATGC 2 cut(s) 578, 580
PfeI GAWTC 1 cut(s) 801
PkrI GCNGC 4 cut(s) 138, 774, 889, 922
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PpuMI RGGWCCY 1 cut(s) 906
PshBI ATTAAT 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 906
Psp6I CCWGG 1 cut(s) 796
PspGI CCWGG 1 cut(s) 796
PspN4I GGNNCC 3 cut(s) 9, 907, 932
PspPI GGNCC 2 cut(s) 341, 906
PspPPI RGGWCCY 1 cut(s) 906
RsaI GTAC 2 cut(s) 97, 156
RsaNI GTAC 2 cut(s) 96, 155
SacI GAGCTC 1 cut(s) 168
SalI GTCGAC 2 cut(s) 66, 412
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 4 cut(s) 137, 773, 888, 921
Sau3AI GATC 5 cut(s) 419, 526, 700, 835, 853
Sau96I GGNCC 2 cut(s) 341, 906
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 798
SduI GDGCHC 2 cut(s) 12, 168
SfcI CTRYAG 1 cut(s) 504
SfuI TTCGAA 2 cut(s) 106, 300
SgrDI CGTCGACG 1 cut(s) 66
SinI GGWCC 2 cut(s) 341, 906
SpeI ACTAGT 1 cut(s) 847
Sse9I AATT 8 cut(s) 14, 108, 191, 234, 319, 375, 546, 873
SsiI CCGC 4 cut(s) 759, 773, 840, 887
SspMI CTAG 2 cut(s) 597, 848
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 796
StyI CCWWGG 1 cut(s) 926
TaaI ACNGT 4 cut(s) 65, 95, 411, 508
TaiI ACGT 3 cut(s) 132, 311, 484
TaqI TCGA 7 cut(s) 67, 106, 300, 413, 764, 804, 852
TasI AATT 8 cut(s) 14, 108, 191, 234, 319, 375, 546, 873
TatI WGTACW 1 cut(s) 154
TauI GCSGC 2 cut(s) 775, 890
TfiI GAWTC 1 cut(s) 801
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 125, 265
TseI GCWGC 2 cut(s) 136, 920
TspDTI ATGAA 5 cut(s) 204, 378, 539, 570, 585
TspRI CASTG 2 cut(s) 125, 265
VpaK11BI GGWCC 2 cut(s) 341, 906
VspI ATTAAT 1 cut(s) 318
XagI CCTNNNNNAGG 1 cut(s) 913
XapI RAATTY 2 cut(s) 108, 546
XcmI CCANNNNNNNNNTGG 1 cut(s) 804
XmiI GTMKAC 2 cut(s) 67, 413
XspI CTAG 2 cut(s) 597, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.