Rh3DG098100

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002000
Physical Location & Seq
Forward (+)
7780529 .. 7787213
6685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG098100.1

Sequence Viewer

Length: 1935 bp
ATGGAGGAGCCCCAATTTGAAAAAGAAAAACCCTCCGAAACCCTAATCTCTCTCCCTCCTCACCGTCGACGAAGCCTCAAGAGCGAAACGCACCGTACTCTGCTTCGAATTCTATCTCACTGCTACGACGTGTTGCAGCACCCAGACCAAAATGTACCTCCGGAGCTCAATCAAGATAATGGGAGTAATGAATTGGGGGAAACAACTGCAAAAGAAGGAGGTAGGAATGTTGAATTGGTTGAGCCTGATAGTAGGAAGTGCGATGATTCGGCAGCTCAACAGGAATTGGTGGCTGTTGAGAGGTGTGATGGTAAGGGTTTACGAGAGAGAATTGGGCAGATAGAGGATTTCTTCAGTGAGGAAGGAAATGAGGAGTTGTCGGGACAGATGGACTTCGAAGATACGTTTGGGATTAATTTTGGAGATTTGGAGTTTGGTCCTGAGGAAATGCTGATGGATGAACTGGAGCAAATTGTGAAAGGAAATGATGACAATGCTCCTAAACTGTCGACCGGATCATTGGTTGAAAATGAGGGTGCAAACGATAAGGTTGAGTTGCTGAGTAACCAAGAACAACGTGATGACTCTCAACATAATGCTACAGTCAGACCGGAAAATGCAGATCAAGTTGTGATTGGTGAAATTCATAATGAAGGAGAGTGTAATGAATGCTCGCATTCCTTGTTGAAGACTAGCGAGTTGGATGTAGAGCCGATAATCCAACAGAAAGCAATGGAGACTTCTGTGTCTTCTGGTAGCGCAGAGGTATCTCTTATTCCCATTACTGAAGTTGCACAGTTTGAGGTGCCAGAACACTTCAGCCAAAAGGTGCCTGAAGCCTTTGTTTTCCCTTTGGACAGAGATATGGTTGGCGATGCTTCAAAGCCTAGTCAGAGCAAAAGCTGGTCACATAAAGCTGATGATTTGGAAGGAGAGCATGAAATTCAGCCAAACGAAAACAAAATGGAAATGGTTTGCACCGGAAATGCTGTGAATTGTCCCAACCATATGAATGATGGAGATATGGAAGAGGGAGAAATCTCTGATGATGATGGGATGGATGATAGATCAACCAATATGCTTTTGCATGATACAGCAAGGTGTGAGGAAAATAAGGTTAATGAATTTCAAATAGTCAAAGATGTCAACGGTCAAAAAGAGCACTCTGGCAAGGAAGCAATTGGTAGAGAATTTGACTCCAATTCCTTTCTGATGAGTATTGCTGACAATGTCCAAAATCCTAGAGGAGTGGAACTCAGAGAAAGTAAAACTAAGCTGATTGGTAGACCTGGAGTTGTCCAGGGGATAACTATGGAAGCTATAAAGGAAAATGGAGATGATCCTTCGCTAGAAAGTCGAAGAATCGAAGAGAAAGATAGCGGAATTGGGAGGGGTATTGGCTTTCAAGAAGCTTGTACTAATAATCAAGCATTGCATGAAAAAATCTCACAGAACTATGAAGCTGGAAGCTGTGGAACTTCATCTGAAGATAAGGTGGATGCTGGTGCCGCAAATAAAAGAAGGCGTGGTCCTCCTTCAAAGGAAAAGAAACAAAGAAAGAAGGCAAAAGAACGATTGAAGCGAGCAGAGATGAACAGAAAACTAGGTGTTAAAAGGTTGAAACTGCATTCCATAGAGAAACCAAAGACTGTAGTATATTGCCGCCATTATATTGCTGGAAGGTGCCATGAGGGTGACAAGTGCAAATTTTCACATGATACAGTGCCTTTAACAAAATCCAAGCCCTGTTGTTATTTTTCACGCCAGTCATGCATGAAAGGGGATGACTGCCCATTTGATCATCAGCTTTCTAAGTATCCCTGTGACAATTTTGTTAATAATGGCTTCTGCGTCAGAGGTGATCGGTGTCTGTTTTCACACAAGGTACATTCTTGCCTGAATAAGATGCTAGTTGGAGCTACTTGTAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

644

Amino Acids

72.07

Weight (kDa)

5.07

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 745
AccB1I GGYRCC 4 cut(s) 805, 829, 1505, 1683
AccI GTMKAC 3 cut(s) 67, 509, 1285
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 3 cut(s) 1380, 1509, 1663
AclWI GGATC 2 cut(s) 523, 1334
AcsI RAATTY 6 cut(s) 108, 642, 942, 1124, 1190, 1706
AcuI CTGAAG 5 cut(s) 337, 802, 807, 855, 1506
AfaI GTAC 4 cut(s) 97, 156, 1417, 1887
AflIII ACRYGT 1 cut(s) 129
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 2 cut(s) 1288, 1299
AjuI GAANNNNNNNTTGG 4 cut(s) 218, 250, 390, 422
Alw21I GWGCWC 2 cut(s) 168, 1164
Alw26I GTCTC 1 cut(s) 731
AlwI GGATC 2 cut(s) 523, 1334
Aor13HI TCCGGA 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 136, 272
ApoI RAATTY 6 cut(s) 108, 642, 942, 1124, 1190, 1706
ArsI GACNNNNNNTTYG 2 cut(s) 1778, 1810
AseI ATTAAT 1 cut(s) 414
AspLEI GCGC 1 cut(s) 761
AspS9I GGNCC 2 cut(s) 437, 1529
AsuHPI GGTGA 4 cut(s) 53, 650, 1706, 1871
AsuII TTCGAA 2 cut(s) 106, 396
AvaII GGWCC 2 cut(s) 437, 1529
AxyI CCTNAGG 1 cut(s) 441
BanI GGYRCC 4 cut(s) 805, 829, 1505, 1683
BanII GRGCYC 2 cut(s) 12, 168
BbsI GAAGAC 2 cut(s) 695, 741
Bbv12I GWGCWC 2 cut(s) 168, 1164
BbvI GCAGC 2 cut(s) 148, 284
BccI CCATC 6 cut(s) 302, 382, 448, 1010, 1046, 1051
BciT130I CCWGG 2 cut(s) 1290, 1301
BciVI GTATCC 1 cut(s) 1827
BclI TGATCA 1 cut(s) 1798
BcoDI GTCTC 1 cut(s) 731
BfaI CTAG 6 cut(s) 693, 888, 1242, 1349, 1604, 1910
BfmI CTRYAG 2 cut(s) 600, 1650
BfuI GTATCC 1 cut(s) 1827
BisI GCNGC 4 cut(s) 137, 273, 1509, 1663
BlsI GCNGC 4 cut(s) 138, 274, 1510, 1664
Bme1390I CCNGG 2 cut(s) 1290, 1301
Bme18I GGWCC 2 cut(s) 437, 1529
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 437, 1529
BmiI GGNNCC 5 cut(s) 9, 807, 831, 1507, 1685
BmrFI CCNGG 2 cut(s) 1290, 1301
BmsI GCATC 3 cut(s) 865, 1489, 1896
BpiI GAAGAC 2 cut(s) 695, 741
BplI GAGNNNNNCTC 2 cut(s) 1239, 1271
BpmI CTGGAG 2 cut(s) 485, 1311
Bpu14I TTCGAA 2 cut(s) 106, 396
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 1300
BsaWI WCCGGW 4 cut(s) 160, 512, 610, 980
Bse1I ACTGG 2 cut(s) 468, 1765
Bse21I CCTNAGG 1 cut(s) 441
Bse3DI GCAATG 2 cut(s) 738, 1430
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 2 cut(s) 1290, 1301
BseDI CCNNGG 1 cut(s) 1300
BseGI GGATG 6 cut(s) 463, 709, 1062, 1066, 1504, 1789
BseMI GCAATG 2 cut(s) 738, 1430
BseMII CTCAG 3 cut(s) 432, 551, 1270
BseNI ACTGG 2 cut(s) 468, 1765
BseRI GAGGAG 4 cut(s) 20, 48, 386, 1260
BseXI GCAGC 2 cut(s) 148, 284
Bsh1285I CGRYCG 1 cut(s) 513
BshNI GGYRCC 4 cut(s) 805, 829, 1505, 1683
BsiEI CGRYCG 1 cut(s) 513
BsiHKAI GWGCWC 2 cut(s) 168, 1164
BsiSI CCGG 4 cut(s) 161, 513, 611, 981
BslFI GGGAC 2 cut(s) 396, 984
BsmAI GTCTC 1 cut(s) 731
BsmFI GGGAC 2 cut(s) 396, 984
BsmI GAATGC 3 cut(s) 674, 676, 1627
Bsp119I TTCGAA 2 cut(s) 106, 396
Bsp1286I GDGCHC 3 cut(s) 12, 168, 1164
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 6 cut(s) 515, 622, 1067, 1339, 1798, 1861
BspACI CCGC 3 cut(s) 1380, 1509, 1663
BspCNI CTCAG 3 cut(s) 433, 552, 1269
BspEI TCCGGA 1 cut(s) 160
BspLI GGNNCC 5 cut(s) 9, 807, 831, 1507, 1685
BspPI GGATC 2 cut(s) 523, 1334
BspT104I TTCGAA 2 cut(s) 106, 396
BspT107I GGYRCC 4 cut(s) 805, 829, 1505, 1683
BsrDI GCAATG 2 cut(s) 738, 1430
BsrI ACTGG 2 cut(s) 468, 1765
BssECI CCNNGG 1 cut(s) 1300
BssMI GATC 6 cut(s) 515, 622, 1067, 1339, 1798, 1861
Bst2UI CCWGG 2 cut(s) 1290, 1301
Bst4CI ACNGT 8 cut(s) 65, 95, 507, 604, 798, 1151, 1651, 1723
Bst6I CTCTTC 2 cut(s) 1023, 1362
BstBI TTCGAA 2 cut(s) 106, 396
BstC8I GCNNGC 2 cut(s) 674, 1584
BstDEI CTNAG 5 cut(s) 441, 560, 1256, 1272, 1812
BstF5I GGATG 6 cut(s) 463, 709, 1062, 1066, 1504, 1789
BstHHI GCGC 1 cut(s) 761
BstKTI GATC 6 cut(s) 518, 625, 1070, 1342, 1801, 1864
BstMAI GTCTC 1 cut(s) 731
BstMBI GATC 6 cut(s) 515, 622, 1067, 1339, 1798, 1861
BstMCI CGRYCG 1 cut(s) 513
BstMWI GCNNNNNNNGC 3 cut(s) 81, 1508, 1770
BstNI CCWGG 2 cut(s) 1290, 1301
BstSCI CCNGG 2 cut(s) 1288, 1299
BstSFI CTRYAG 2 cut(s) 600, 1650
BstV1I GCAGC 2 cut(s) 148, 284
BstV2I GAAGAC 2 cut(s) 695, 741
Bsu36I CCTNAGG 1 cut(s) 441
BsuI GTATCC 1 cut(s) 1827
BtgZI GCGATG 2 cut(s) 276, 888
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 6 cut(s) 463, 709, 1062, 1066, 1504, 1789
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 3 cut(s) 118, 361, 1728
Cac8I GCNNGC 2 cut(s) 674, 1584
CfoI GCGC 1 cut(s) 761
Cfr13I GGNCC 2 cut(s) 437, 1529
CseI GACGC 1 cut(s) 1840
Csp6I GTAC 4 cut(s) 96, 155, 1416, 1886
CviAII CATG 7 cut(s) 938, 1088, 1436, 1688, 1715, 1770, 1774
CviQI GTAC 4 cut(s) 96, 155, 1416, 1886
DdeI CTNAG 5 cut(s) 441, 560, 1256, 1272, 1812
DpnI GATC 6 cut(s) 517, 624, 1069, 1341, 1800, 1863
DpnII GATC 6 cut(s) 515, 622, 1067, 1339, 1798, 1861
DrdI GACNNNNNNGTC 1 cut(s) 745
DseDI GACNNNNNNGTC 1 cut(s) 745
Eam1104I CTCTTC 2 cut(s) 1023, 1362
EarI CTCTTC 2 cut(s) 1023, 1362
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 12, 168
Eco47I GGWCC 2 cut(s) 437, 1529
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 5 cut(s) 337, 802, 807, 855, 1506
Eco81I CCTNAGG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 1288, 1299
EcoT22I ATGCAT 1 cut(s) 1775
EcoT38I GRGCYC 2 cut(s) 12, 168
FaeI CATG 7 cut(s) 941, 1091, 1439, 1691, 1718, 1773, 1777
FaqI GGGAC 2 cut(s) 396, 984
FatI CATG 7 cut(s) 937, 1087, 1435, 1687, 1714, 1769, 1773
FauNDI CATATG 1 cut(s) 1008
FbaI TGATCA 1 cut(s) 1798
FblI GTMKAC 3 cut(s) 67, 509, 1285
Fnu4HI GCNGC 4 cut(s) 137, 273, 1509, 1663
FokI GGATG 6 cut(s) 470, 716, 1069, 1073, 1511, 1796
FriOI GRGCYC 2 cut(s) 12, 168
Fsp4HI GCNGC 4 cut(s) 137, 273, 1509, 1663
FspBI CTAG 6 cut(s) 693, 888, 1242, 1349, 1604, 1910
GlaI GCGC 1 cut(s) 760
GluI GCNGC 4 cut(s) 137, 273, 1509, 1663
GsuI CTGGAG 2 cut(s) 485, 1311
HapII CCGG 4 cut(s) 161, 513, 611, 981
HgaI GACGC 1 cut(s) 1840
HhaI GCGC 1 cut(s) 761
Hin1II CATG 7 cut(s) 941, 1091, 1439, 1691, 1718, 1773, 1777
Hin6I GCGC 1 cut(s) 759
HinP1I GCGC 1 cut(s) 759
HincII GTYRAC 3 cut(s) 68, 510, 1147
HindII GTYRAC 3 cut(s) 68, 510, 1147
HindIII AAGCTT 1 cut(s) 1410
HinfI GANTC 4 cut(s) 266, 584, 1196, 1362
HpaII CCGG 4 cut(s) 161, 513, 611, 981
HphI GGTGA 4 cut(s) 53, 650, 1706, 1871
Hpy166II GTNNAC 5 cut(s) 68, 320, 510, 1147, 1286
Hpy188I TCNGA 8 cut(s) 37, 608, 894, 1045, 1212, 1259, 1486, 1856
Hpy188III TCNNGA 6 cut(s) 79, 161, 173, 381, 440, 1406
Hpy8I GTNNAC 5 cut(s) 68, 320, 510, 1147, 1286
Hpy99I CGWCG 3 cut(s) 69, 72, 131
HpyAV CCTTC 9 cut(s) 209, 356, 647, 923, 1353, 1515, 1545, 1555, 1674
HpyCH4III ACNGT 8 cut(s) 65, 95, 507, 604, 798, 1151, 1651, 1723
HpyCH4IV ACGT 3 cut(s) 129, 404, 577
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 1508, 1770
HpyF3I CTNAG 5 cut(s) 441, 560, 1256, 1272, 1812
HpySE526I ACGT 3 cut(s) 129, 404, 577
Hsp92II CATG 7 cut(s) 941, 1091, 1439, 1691, 1718, 1773, 1777
HspAI GCGC 1 cut(s) 759
Kpn2I TCCGGA 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 1798
Kzo9I GATC 6 cut(s) 515, 622, 1067, 1339, 1798, 1861
LmnI GCTCC 5 cut(s) 7, 163, 466, 502, 1916
Lsp1109I GCAGC 2 cut(s) 148, 284
LweI GCATC 3 cut(s) 865, 1489, 1896
MaeI CTAG 6 cut(s) 693, 888, 1242, 1349, 1604, 1910
MaeII ACGT 3 cut(s) 129, 404, 577
MaeIII GTNAC 4 cut(s) 563, 906, 1694, 1823
MalI GATC 6 cut(s) 517, 624, 1069, 1341, 1800, 1863
MboI GATC 6 cut(s) 515, 622, 1067, 1339, 1798, 1861
MboII GAAGA 8 cut(s) 343, 410, 700, 741, 1040, 1371, 1379, 1499
MfeI CAATTG 1 cut(s) 1179
MhlI GDGCHC 3 cut(s) 12, 168, 1164
MlyI GAGTC 2 cut(s) 578, 1190
MmeI TCCRAC 3 cut(s) 681, 745, 1894
Mph1103I ATGCAT 1 cut(s) 1775
MroI TCCGGA 1 cut(s) 160
MseI TTAA 5 cut(s) 414, 1119, 1611, 1730, 1836
MslI CAYNNNNRTG 2 cut(s) 1011, 1692
MspI CCGG 4 cut(s) 161, 513, 611, 981
MspR9I CCNGG 2 cut(s) 1290, 1301
MunI CAATTG 1 cut(s) 1179
Mva1269I GAATGC 3 cut(s) 674, 676, 1627
MvaI CCWGG 2 cut(s) 1290, 1301
MwoI GCNNNNNNNGC 3 cut(s) 81, 1508, 1770
NdeI CATATG 1 cut(s) 1008
NdeII GATC 6 cut(s) 515, 622, 1067, 1339, 1798, 1861
NlaIII CATG 7 cut(s) 941, 1091, 1439, 1691, 1718, 1773, 1777
NlaIV GGNNCC 5 cut(s) 9, 807, 831, 1507, 1685
NmuCI GTSAC 3 cut(s) 906, 1694, 1823
NsiI ATGCAT 1 cut(s) 1775
NspV TTCGAA 2 cut(s) 106, 396
PcsI WCGNNNNNNNCGW 1 cut(s) 1579
PctI GAATGC 3 cut(s) 674, 676, 1627
PfeI GAWTC 2 cut(s) 266, 1362
PflFI GACNNNGTC 1 cut(s) 1229
PkrI GCNGC 4 cut(s) 138, 274, 1510, 1664
PleI GAGTC 2 cut(s) 578, 1190
PpsI GAGTC 2 cut(s) 578, 1190
PshBI ATTAAT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 1288, 1299
PspGI CCWGG 2 cut(s) 1288, 1299
PspN4I GGNNCC 5 cut(s) 9, 807, 831, 1507, 1685
PspPI GGNCC 2 cut(s) 437, 1529
PsyI GACNNNGTC 1 cut(s) 1229
RsaI GTAC 4 cut(s) 97, 156, 1417, 1887
RsaNI GTAC 4 cut(s) 96, 155, 1416, 1886
RseI CAYNNNNRTG 2 cut(s) 1011, 1692
SacI GAGCTC 1 cut(s) 168
SalI GTCGAC 2 cut(s) 66, 508
SaqAI TTAA 5 cut(s) 414, 1119, 1611, 1730, 1836
SatI GCNGC 4 cut(s) 137, 273, 1509, 1663
Sau3AI GATC 6 cut(s) 515, 622, 1067, 1339, 1798, 1861
Sau96I GGNCC 2 cut(s) 437, 1529
SchI GAGTC 2 cut(s) 578, 1190
ScrFI CCNGG 2 cut(s) 1290, 1301
SduI GDGCHC 3 cut(s) 12, 168, 1164
SfaNI GCATC 3 cut(s) 865, 1489, 1896
SfcI CTRYAG 2 cut(s) 600, 1650
SfuI TTCGAA 2 cut(s) 106, 396
SgrDI CGTCGACG 1 cut(s) 66
SinI GGWCC 2 cut(s) 437, 1529
SmiMI CAYNNNNRTG 2 cut(s) 1011, 1692
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SsiI CCGC 3 cut(s) 1380, 1509, 1663
SspMI CTAG 6 cut(s) 693, 888, 1242, 1349, 1604, 1910
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 1288, 1299
TaaI ACNGT 8 cut(s) 65, 95, 507, 604, 798, 1151, 1651, 1723
TaiI ACGT 3 cut(s) 132, 407, 580
TaqI TCGA 6 cut(s) 67, 106, 396, 509, 1357, 1365
TatI WGTACW 1 cut(s) 1415
TauI GCSGC 2 cut(s) 1511, 1665
TfiI GAWTC 2 cut(s) 266, 1362
Tru1I TTAA 5 cut(s) 414, 1119, 1611, 1730, 1836
Tru9I TTAA 5 cut(s) 414, 1119, 1611, 1730, 1836
TscAI CASTG 3 cut(s) 125, 361, 1728
TseFI GTSAC 3 cut(s) 906, 1694, 1823
TseI GCWGC 2 cut(s) 136, 272
Tsp45I GTSAC 3 cut(s) 906, 1694, 1823
TspRI CASTG 3 cut(s) 125, 361, 1728
Tth111I GACNNNGTC 1 cut(s) 1229
VpaK11BI GGWCC 2 cut(s) 437, 1529
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 6 cut(s) 108, 642, 942, 1124, 1190, 1706
XcmI CCANNNNNNNNNTGG 2 cut(s) 1013, 1673
XmiI GTMKAC 3 cut(s) 67, 509, 1285
XspI CTAG 6 cut(s) 693, 888, 1242, 1349, 1604, 1910
Zsp2I ATGCAT 1 cut(s) 1775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.