Rorug02G0038500

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002000
Physical Location & Seq
Forward (+)
3010316 .. 3011713
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0038500.1

Sequence Viewer

Length: 1170 bp
ATGGCTTCTTCTTTTGATCCACGAAGCAAACCAAGCTGGAAAGTACCAGATAGAGAAAATGTCCTCGAATTAATAAACCTACACAGTGCAATTTATTACACCATGCTGATGGAGACCGCCCCAACATCCTCCATTAGACTTGAAGATGCCGATTATCACGAGGTCAAAAACCTCTCTGTCAAGGAAGTAGAGGAGAAACTTGAAGCTCTCAAGAAAAAATTAGATGATGCGGAATTTAGTTTGATTTCACGAGGCAAGTCCAACCAGACCTATCGTGCTTGTAGCGATGGTGTCAAACGTTATGCGCTGAAGGATATAAATAAATGCTTTAAACCAAGAGCTGAAAAAAGAGAAGCCATCCGTTATATGATTGATCTTATTATCCAGTCCTTCAAAGAAGAAAAACGACCTACACTTGCTAAGCTGAATACGTCGAGCTCAGCTCTTGATGACATATGTTGCGCTATAGGTTGCACCAGATCAAGTCTCAACGTAGATGCTAGTGTAAGAGGCGTTGTTGGAGGTCTGCTTTCGATCAAGATTGGAAAGTACAAAACCTTGTGTACACGCAGGGATGATGGGGAACCCATCCCGCCTTTTATGCATTCAGATATTATTTTGAAGAATCGTGGAGCCAAGTTCGTATTGGTGGTGGAAGATAAATCCGCTTTTAATACTCTCATGCAAGACAAGTTTTACGTTGATTATCCATGTATAATCATCACCGGAATGGGAATGCCGGAGGTGGGGAGCAGAAGTTTTCTAAACGTATTGTCGGAGAAGTTTAAGATTCCAGTGTATGGCCTTTTCGACTGTGATCCAGCTGGCATCGAAATTTTATCAGTTTATGCTGCTGGGTCGTACAATAAATCGTACGATAGTGTGAATTTGACTTGCCCGGATATGATGTGGTTGGGTGTTTGGCCGAGTGACCTACATGCGCTTAAAATACCCTGCAAGGATTTAAATTCAGAGGAGATTAGAAAAGTAAACACTCTTTTGGAAGAAGATTTTGTGAAAGAGTATCCGACATTGCTTGAGGAGCTGCAACTTATGAAGAAGAAGAAGAAAAAGGCAAACCTTGAAGCTTTGGAGAAGTTTGGGCGCACTTGTTTGACCAAGTACTATTTGCCATATAAGTTGAAGTATCTCTTAACCGACACCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

389

Amino Acids

44.24

Weight (kDa)

8.31

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOP6A-Spo11_Toprim PF21180 214 - 381 4.3e-53 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 800
AciI CCGC 4 cut(s) 117, 230, 593, 666
AclI AACGTT 1 cut(s) 298
AclWI GGATC 2 cut(s) 11, 812
AcoI YGGCCR 1 cut(s) 923
AcsI RAATTY 4 cut(s) 233, 834, 886, 967
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 6 cut(s) 45, 551, 565, 863, 875, 1124
AfiI CCNNNNNNNGG 2 cut(s) 746, 800
AgsI TTSAA 6 cut(s) 143, 203, 394, 622, 1085, 1144
AluBI AGCT 9 cut(s) 36, 206, 341, 424, 438, 443, 824, 1045, 1088
AluI AGCT 9 cut(s) 36, 206, 341, 424, 438, 443, 824, 1045, 1088
Alw21I GWGCWC 1 cut(s) 440
Alw26I GTCTC 2 cut(s) 107, 491
AlwI GGATC 2 cut(s) 11, 812
AoxI GGCC 2 cut(s) 802, 923
ApeKI GCWGC 2 cut(s) 851, 1045
ApoI RAATTY 4 cut(s) 233, 834, 886, 967
AseI ATTAAT 1 cut(s) 71
AspLEI GCGC 4 cut(s) 307, 464, 943, 1107
AsuC2I CCSGG 1 cut(s) 899
AsuHPI GGTGA 1 cut(s) 715
BanII GRGCYC 1 cut(s) 440
BauI CACGAG 2 cut(s) 158, 249
Bbv12I GWGCWC 1 cut(s) 440
BbvI GCAGC 2 cut(s) 838, 1032
BccI CCATC 5 cut(s) 103, 281, 365, 572, 596
BciVI GTATCC 1 cut(s) 1035
BcnI CCSGG 1 cut(s) 899
BcoDI GTCTC 2 cut(s) 107, 491
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 465
BfuI GTATCC 1 cut(s) 1035
BisI GCNGC 2 cut(s) 852, 1046
BlpI GCTNAGC 2 cut(s) 420, 439
BlsI GCNGC 2 cut(s) 853, 1047
BmcAI AGTACT 1 cut(s) 1124
Bme1390I CCNGG 1 cut(s) 899
BmiI GGNNCC 2 cut(s) 585, 634
BmrFI CCNGG 1 cut(s) 899
BmsI GCATC 4 cut(s) 136, 217, 487, 837
BplI GAGNNNNNCTC 2 cut(s) 427, 459
Bpu1102I GCTNAGC 2 cut(s) 420, 439
BpuEI CTTGAG 2 cut(s) 194, 1058
BpuMI CCSGG 1 cut(s) 899
BsaI GGTCTC 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 725
BsaXI ACNNNNNCTCC 2 cut(s) 742, 772
Bsc4I CCNNNNNNNGG 2 cut(s) 746, 800
Bse1I ACTGG 2 cut(s) 385, 794
Bse3DI GCAATG 1 cut(s) 1031
BseGI GGATG 4 cut(s) 125, 357, 580, 588
BseLI CCNNNNNNNGG 2 cut(s) 746, 800
BseMI GCAATG 1 cut(s) 1031
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 2 cut(s) 385, 794
BseRI GAGGAG 3 cut(s) 206, 989, 1055
BseXI GCAGC 2 cut(s) 838, 1032
BseYI CCCAGC 1 cut(s) 854
BshFI GGCC 2 cut(s) 804, 925
BsiHKAI GWGCWC 1 cut(s) 440
BsiSI CCGG 3 cut(s) 726, 740, 899
BsiWI CGTACG 1 cut(s) 873
BslI CCNNNNNNNGG 2 cut(s) 746, 800
BsmAI GTCTC 2 cut(s) 107, 491
BsmI GAATGC 2 cut(s) 604, 741
BsnI GGCC 2 cut(s) 804, 925
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 440
Bsp1407I TGTACA 1 cut(s) 563
Bsp143I GATC 5 cut(s) 16, 373, 479, 534, 817
Bsp1720I GCTNAGC 2 cut(s) 420, 439
BspACI CCGC 4 cut(s) 117, 230, 593, 666
BspANI GGCC 2 cut(s) 804, 925
BspCNI CTCAG 1 cut(s) 452
BspLI GGNNCC 2 cut(s) 585, 634
BspPI GGATC 2 cut(s) 11, 812
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 1031
BsrGI TGTACA 1 cut(s) 563
BsrI ACTGG 2 cut(s) 385, 794
BssMI GATC 5 cut(s) 16, 373, 479, 534, 817
BssSI CACGAG 2 cut(s) 158, 249
Bst2BI CACGAG 2 cut(s) 158, 249
Bst4CI ACNGT 2 cut(s) 86, 815
BstAUI TGTACA 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 826
BstDEI CTNAG 2 cut(s) 420, 439
BstF5I GGATG 4 cut(s) 125, 357, 580, 588
BstHHI GCGC 4 cut(s) 307, 464, 943, 1107
BstKTI GATC 5 cut(s) 19, 376, 482, 537, 820
BstMAI GTCTC 2 cut(s) 107, 491
BstMBI GATC 5 cut(s) 16, 373, 479, 534, 817
BstMWI GCNNNNNNNGC 3 cut(s) 33, 601, 1042
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 1 cut(s) 897
BstSFI CTRYAG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 838, 1032
BstXI CCANNNNNNTGG 1 cut(s) 109
BsuI GTATCC 1 cut(s) 1035
BsuRI GGCC 2 cut(s) 804, 925
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 4 cut(s) 125, 357, 580, 588
BtsIMutI CAGTG 2 cut(s) 91, 801
Cac8I GCNNGC 1 cut(s) 826
CfoI GCGC 4 cut(s) 307, 464, 943, 1107
Csp6I GTAC 6 cut(s) 44, 550, 564, 862, 874, 1123
CviAII CATG 4 cut(s) 103, 682, 711, 938
CviQI GTAC 6 cut(s) 44, 550, 564, 862, 874, 1123
DdeI CTNAG 2 cut(s) 420, 439
DpnI GATC 5 cut(s) 18, 375, 481, 536, 819
DpnII GATC 5 cut(s) 16, 373, 479, 534, 817
DraI TTTAAA 2 cut(s) 331, 966
EaeI YGGCCR 1 cut(s) 923
Ecl136II GAGCTC 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 440
Eco31I GGTCTC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 438
Eco57I CTGAAG 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 440
FaeI CATG 4 cut(s) 106, 685, 714, 941
FalI AAGNNNNNCTT 2 cut(s) 1136, 1168
FatI CATG 4 cut(s) 102, 681, 710, 937
FauI CCCGC 1 cut(s) 600
FauNDI CATATG 1 cut(s) 455
Fnu4HI GCNGC 2 cut(s) 852, 1046
FokI GGATG 4 cut(s) 112, 344, 575, 587
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 2 cut(s) 852, 1046
FspBI CTAG 1 cut(s) 501
GlaI GCGC 4 cut(s) 306, 463, 942, 1106
GluI GCNGC 2 cut(s) 852, 1046
GsaI CCCAGC 1 cut(s) 858
HaeIII GGCC 2 cut(s) 804, 925
HapII CCGG 3 cut(s) 726, 740, 899
HhaI GCGC 4 cut(s) 307, 464, 943, 1107
Hin1II CATG 4 cut(s) 106, 685, 714, 941
Hin6I GCGC 4 cut(s) 305, 462, 941, 1105
HinP1I GCGC 4 cut(s) 305, 462, 941, 1105
HindIII AAGCTT 1 cut(s) 1086
HinfI GANTC 2 cut(s) 625, 790
HpaII CCGG 3 cut(s) 726, 740, 899
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 3 cut(s) 564, 566, 991
Hpy188I TCNGA 4 cut(s) 610, 778, 973, 1029
Hpy188III TCNNGA 5 cut(s) 158, 211, 249, 446, 538
Hpy8I GTNNAC 3 cut(s) 564, 566, 991
Hpy99I CGWCG 1 cut(s) 436
HpyAV CCTTC 2 cut(s) 304, 400
HpyCH4III ACNGT 2 cut(s) 86, 815
HpyCH4IV ACGT 5 cut(s) 298, 431, 492, 699, 768
HpyCH4V TGCA 6 cut(s) 89, 474, 604, 685, 957, 1048
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 601, 1042
HpyF3I CTNAG 2 cut(s) 420, 439
HpySE526I ACGT 5 cut(s) 298, 431, 492, 699, 768
Hsp92II CATG 4 cut(s) 106, 685, 714, 941
HspAI GCGC 4 cut(s) 305, 462, 941, 1105
Kzo9I GATC 5 cut(s) 16, 373, 479, 534, 817
LmnI GCTCC 3 cut(s) 632, 750, 1042
Lsp1109I GCAGC 2 cut(s) 838, 1032
LweI GCATC 4 cut(s) 136, 217, 487, 837
MaeI CTAG 1 cut(s) 501
MaeII ACGT 5 cut(s) 298, 431, 492, 699, 768
MaeIII GTNAC 1 cut(s) 929
MalI GATC 5 cut(s) 18, 375, 481, 536, 819
MboI GATC 5 cut(s) 16, 373, 479, 534, 817
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 7 cut(s) 68, 90, 218, 233, 834, 886, 967
MmeI TCCRAC 4 cut(s) 285, 499, 756, 1052
Mph1103I ATGCAT 1 cut(s) 606
MseI TTAA 7 cut(s) 71, 330, 672, 786, 945, 965, 1154
MslI CAYNNNNRTG 2 cut(s) 107, 728
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 3 cut(s) 726, 740, 899
MspR9I CCNGG 1 cut(s) 899
Mva1269I GAATGC 2 cut(s) 604, 741
MwoI GCNNNNNNNGC 3 cut(s) 33, 601, 1042
NciI CCSGG 1 cut(s) 899
NdeI CATATG 1 cut(s) 455
NdeII GATC 5 cut(s) 16, 373, 479, 534, 817
NlaIII CATG 4 cut(s) 106, 685, 714, 941
NlaIV GGNNCC 2 cut(s) 585, 634
NmeAIII GCCGAG 1 cut(s) 951
NmuCI GTSAC 1 cut(s) 929
NsiI ATGCAT 1 cut(s) 606
NspI RCATGY 1 cut(s) 941
PctI GAATGC 2 cut(s) 604, 741
PfeI GAWTC 2 cut(s) 625, 790
Pfl23II CGTACG 1 cut(s) 873
PflMI CCANNNNNTGG 1 cut(s) 800
PkrI GCNGC 2 cut(s) 853, 1047
PshBI ATTAAT 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 440
Psp1406I AACGTT 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 854
PspLI CGTACG 1 cut(s) 873
PspN4I GGNNCC 2 cut(s) 585, 634
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 6 cut(s) 45, 551, 565, 863, 875, 1124
RsaNI GTAC 6 cut(s) 44, 550, 564, 862, 874, 1123
RseI CAYNNNNRTG 2 cut(s) 107, 728
SacI GAGCTC 1 cut(s) 440
SaqAI TTAA 7 cut(s) 71, 330, 672, 786, 945, 965, 1154
SatI GCNGC 2 cut(s) 852, 1046
Sau3AI GATC 5 cut(s) 16, 373, 479, 534, 817
ScaI AGTACT 1 cut(s) 1124
ScrFI CCNGG 1 cut(s) 899
SduI GDGCHC 1 cut(s) 440
SfaNI GCATC 4 cut(s) 136, 217, 487, 837
SfcI CTRYAG 1 cut(s) 465
SmiI ATTTAAAT 1 cut(s) 966
SmiMI CAYNNNNRTG 2 cut(s) 107, 728
SmlI CTYRAG 2 cut(s) 209, 1037
SmoI CTYRAG 2 cut(s) 209, 1037
Sse9I AATT 7 cut(s) 68, 90, 218, 233, 834, 886, 967
SsiI CCGC 4 cut(s) 117, 230, 593, 666
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 897
SwaI ATTTAAAT 1 cut(s) 966
TaaI ACNGT 2 cut(s) 86, 815
TaiI ACGT 5 cut(s) 301, 434, 495, 702, 771
TaqI TCGA 5 cut(s) 66, 434, 533, 810, 831
TasI AATT 7 cut(s) 68, 90, 218, 233, 834, 886, 967
TatI WGTACW 3 cut(s) 549, 563, 1122
TfiI GAWTC 2 cut(s) 625, 790
Tru1I TTAA 7 cut(s) 71, 330, 672, 786, 945, 965, 1154
Tru9I TTAA 7 cut(s) 71, 330, 672, 786, 945, 965, 1154
TscAI CASTG 2 cut(s) 91, 801
TseFI GTSAC 1 cut(s) 929
TseI GCWGC 2 cut(s) 851, 1045
Tsp45I GTSAC 1 cut(s) 929
TspDTI ATGAA 1 cut(s) 1070
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 2 cut(s) 91, 801
Van91I CCANNNNNTGG 1 cut(s) 800
VspI ATTAAT 1 cut(s) 71
XapI RAATTY 4 cut(s) 233, 834, 886, 967
XceI RCATGY 1 cut(s) 941
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XspI CTAG 1 cut(s) 501
ZrmI AGTACT 1 cut(s) 1124
Zsp2I ATGCAT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.