Zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 712, 2680 |
| Acc36I | ACCTGC | 2 cut(s) | 2059, 2395 |
| AccB1I | GGYRCC | 6 cut(s) | 772, 796, 1472, 1650, 2156, 2368 |
| AccI | GTMKAC | 3 cut(s) | 67, 476, 1252 |
| AccII | CGCG | 1 cut(s) | 665 |
| AciI | CCGC | 3 cut(s) | 1347, 1476, 1630 |
| AclWI | GGATC | 2 cut(s) | 490, 1301 |
| AcsI | RAATTY | 6 cut(s) | 108, 609, 1091, 1157, 1673, 1966 |
| AcuI | CTGAAG | 7 cut(s) | 304, 769, 774, 822, 1473, 2553, 2565 |
| AfaI | GTAC | 4 cut(s) | 97, 1384, 2152, 2782 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 2145, 2166 |
| AflIII | ACRYGT | 1 cut(s) | 129 |
| AgeI | ACCGGT | 1 cut(s) | 2236 |
| AjiI | CACGTC | 1 cut(s) | 130 |
| AjnI | CCWGG | 4 cut(s) | 1255, 1266, 1925, 2597 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 185, 217, 357, 389, 2084, 2116 |
| Alw21I | GWGCWC | 1 cut(s) | 1131 |
| Alw26I | GTCTC | 4 cut(s) | 698, 1908, 2339, 2711 |
| AlwI | GGATC | 2 cut(s) | 490, 1301 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2348 |
| Ama87I | CYCGRG | 1 cut(s) | 2611 |
| AoxI | GGCC | 1 cut(s) | 2136 |
| ApeKI | GCWGC | 4 cut(s) | 136, 239, 1880, 2548 |
| ApoI | RAATTY | 6 cut(s) | 108, 609, 1091, 1157, 1673, 1966 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1745, 1777 |
| AseI | ATTAAT | 2 cut(s) | 153, 381 |
| AsiGI | ACCGGT | 1 cut(s) | 2236 |
| AspLEI | GCGC | 2 cut(s) | 665, 728 |
| AspS9I | GGNCC | 3 cut(s) | 404, 1496, 2137 |
| AsuHPI | GGTGA | 7 cut(s) | 53, 617, 1673, 1838, 2277, 2312, 2504 |
| AsuII | TTCGAA | 2 cut(s) | 106, 363 |
| AsuNHI | GCTAGC | 1 cut(s) | 1883 |
| AvaI | CYCGRG | 1 cut(s) | 2611 |
| AvaII | GGWCC | 2 cut(s) | 404, 1496 |
| AxyI | CCTNAGG | 1 cut(s) | 408 |
| BanI | GGYRCC | 6 cut(s) | 772, 796, 1472, 1650, 2156, 2368 |
| BanII | GRGCYC | 1 cut(s) | 12 |
| BbsI | GAAGAC | 2 cut(s) | 662, 708 |
| Bbv12I | GWGCWC | 1 cut(s) | 1131 |
| BbvI | GCAGC | 4 cut(s) | 148, 251, 1867, 2535 |
| BccI | CCATC | 9 cut(s) | 269, 349, 415, 977, 1013, 1018, 2197, 2285, 2325 |
| BciT130I | CCWGG | 4 cut(s) | 1257, 1268, 1927, 2599 |
| BciVI | GTATCC | 1 cut(s) | 1794 |
| BclI | TGATCA | 1 cut(s) | 1765 |
| BcoDI | GTCTC | 4 cut(s) | 698, 1908, 2339, 2711 |
| BfaI | CTAG | 8 cut(s) | 660, 855, 1209, 1316, 1571, 1884, 2112, 2430 |
| BfmI | CTRYAG | 4 cut(s) | 567, 1617, 2085, 2403 |
| BfuAI | ACCTGC | 2 cut(s) | 2059, 2395 |
| BfuI | GTATCC | 1 cut(s) | 1794 |
| BisI | GCNGC | 6 cut(s) | 137, 240, 1476, 1630, 1881, 2549 |
| BlsI | GCNGC | 6 cut(s) | 138, 241, 1477, 1631, 1882, 2550 |
| BmcAI | AGTACT | 1 cut(s) | 2152 |
| Bme1390I | CCNGG | 4 cut(s) | 1257, 1268, 1927, 2599 |
| Bme18I | GGWCC | 2 cut(s) | 404, 1496 |
| BmeT110I | CYCGRG | 1 cut(s) | 2611 |
| BmgBI | CACGTC | 1 cut(s) | 130 |
| BmgT120I | GGNCC | 3 cut(s) | 404, 1496, 2137 |
| BmrFI | CCNGG | 4 cut(s) | 1257, 1268, 1927, 2599 |
| BmsI | GCATC | 6 cut(s) | 832, 1406, 1456, 1827, 2166, 2603 |
| BmtI | GCTAGC | 1 cut(s) | 1887 |
| BpiI | GAAGAC | 2 cut(s) | 662, 708 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1206, 1238 |
| BpmI | CTGGAG | 2 cut(s) | 452, 1278 |
| Bpu14I | TTCGAA | 2 cut(s) | 106, 363 |
| BpuEI | CTTGAG | 2 cut(s) | 62, 2512 |
| BsaI | GGTCTC | 1 cut(s) | 2711 |
| BsaJI | CCNNGG | 3 cut(s) | 1267, 1860, 2612 |
| BsaWI | WCCGGW | 4 cut(s) | 479, 577, 947, 2236 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2140, 2170 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 2145, 2166 |
| Bse118I | RCCGGY | 1 cut(s) | 2236 |
| Bse1I | ACTGG | 4 cut(s) | 435, 1732, 2158, 2298 |
| Bse21I | CCTNAGG | 1 cut(s) | 408 |
| Bse3DI | GCAATG | 3 cut(s) | 705, 1976, 2061 |
| BseBI | CCWGG | 4 cut(s) | 1257, 1268, 1927, 2599 |
| BseDI | CCNNGG | 3 cut(s) | 1267, 1860, 2612 |
| BseGI | GGATG | 7 cut(s) | 430, 676, 1029, 1033, 1471, 1756, 2594 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 2145, 2166 |
| BseMI | GCAATG | 3 cut(s) | 705, 1976, 2061 |
| BseMII | CTCAG | 4 cut(s) | 399, 518, 1237, 2748 |
| BseNI | ACTGG | 4 cut(s) | 435, 1732, 2158, 2298 |
| BseRI | GAGGAG | 4 cut(s) | 20, 48, 353, 1227 |
| BseXI | GCAGC | 4 cut(s) | 148, 251, 1867, 2535 |
| BseYI | CCCAGC | 2 cut(s) | 1915, 2165 |
| BsgI | GTGCAG | 2 cut(s) | 1917, 2373 |
| Bsh1236I | CGCG | 1 cut(s) | 665 |
| Bsh1285I | CGRYCG | 1 cut(s) | 480 |
| BshFI | GGCC | 1 cut(s) | 2138 |
| BshNI | GGYRCC | 6 cut(s) | 772, 796, 1472, 1650, 2156, 2368 |
| BshTI | ACCGGT | 1 cut(s) | 2236 |
| BsiEI | CGRYCG | 1 cut(s) | 480 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1131 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2611 |
| BsiSI | CCGG | 4 cut(s) | 480, 578, 948, 2237 |
| BslFI | GGGAC | 4 cut(s) | 363, 951, 1938, 2008 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 2145, 2166 |
| BsmAI | GTCTC | 4 cut(s) | 698, 1908, 2339, 2711 |
| BsmFI | GGGAC | 4 cut(s) | 363, 951, 1938, 2008 |
| BsmI | GAATGC | 3 cut(s) | 641, 643, 1594 |
| BsnI | GGCC | 1 cut(s) | 2138 |
| Bso31I | GGTCTC | 1 cut(s) | 2711 |
| BsoBI | CYCGRG | 1 cut(s) | 2611 |
| Bsp119I | TTCGAA | 2 cut(s) | 106, 363 |
| Bsp1286I | GDGCHC | 2 cut(s) | 12, 1131 |
| Bsp143I | GATC | 6 cut(s) | 482, 589, 1034, 1306, 1765, 1828 |
| BspACI | CCGC | 3 cut(s) | 1347, 1476, 1630 |
| BspANI | GGCC | 1 cut(s) | 2138 |
| BspCNI | CTCAG | 4 cut(s) | 400, 519, 1236, 2747 |
| BspFNI | CGCG | 1 cut(s) | 665 |
| BspMI | ACCTGC | 2 cut(s) | 2059, 2395 |
| BspOI | GCTAGC | 1 cut(s) | 1887 |
| BspPI | GGATC | 2 cut(s) | 490, 1301 |
| BspT104I | TTCGAA | 2 cut(s) | 106, 363 |
| BspT107I | GGYRCC | 6 cut(s) | 772, 796, 1472, 1650, 2156, 2368 |
| BspTNI | GGTCTC | 1 cut(s) | 2711 |
| BsrDI | GCAATG | 3 cut(s) | 705, 1976, 2061 |
| BsrFI | RCCGGY | 1 cut(s) | 2236 |
| BsrI | ACTGG | 4 cut(s) | 435, 1732, 2158, 2298 |
| BssAI | RCCGGY | 1 cut(s) | 2236 |
| BssECI | CCNNGG | 3 cut(s) | 1267, 1860, 2612 |
| BssMI | GATC | 6 cut(s) | 482, 589, 1034, 1306, 1765, 1828 |
| BssT1I | CCWWGG | 1 cut(s) | 1860 |
| Bst2UI | CCWGG | 4 cut(s) | 1257, 1268, 1927, 2599 |
| Bst6I | CTCTTC | 2 cut(s) | 990, 1329 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1880 |
| BstBI | TTCGAA | 2 cut(s) | 106, 363 |
| BstC8I | GCNNGC | 3 cut(s) | 641, 1551, 1885 |
| BstDEI | CTNAG | 6 cut(s) | 408, 527, 1223, 1239, 1779, 2734 |
| BstF5I | GGATG | 7 cut(s) | 430, 676, 1029, 1033, 1471, 1756, 2594 |
| BstFNI | CGCG | 1 cut(s) | 665 |
| BstHHI | GCGC | 2 cut(s) | 665, 728 |
| BstKTI | GATC | 6 cut(s) | 485, 592, 1037, 1309, 1768, 1831 |
| BstMAI | GTCTC | 4 cut(s) | 698, 1908, 2339, 2711 |
| BstMBI | GATC | 6 cut(s) | 482, 589, 1034, 1306, 1765, 1828 |
| BstMCI | CGRYCG | 1 cut(s) | 480 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 81, 1475, 1737, 1880 |
| BstNI | CCWGG | 4 cut(s) | 1257, 1268, 1927, 2599 |
| BstSCI | CCNGG | 4 cut(s) | 1255, 1266, 1925, 2597 |
| BstSFI | CTRYAG | 4 cut(s) | 567, 1617, 2085, 2403 |
| BstUI | CGCG | 1 cut(s) | 665 |
| BstV1I | GCAGC | 4 cut(s) | 148, 251, 1867, 2535 |
| BstV2I | GAAGAC | 2 cut(s) | 662, 708 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1915 |
| Bsu36I | CCTNAGG | 1 cut(s) | 408 |
| BsuI | GTATCC | 1 cut(s) | 1794 |
| BsuRI | GGCC | 1 cut(s) | 2138 |
| BtgZI | GCGATG | 3 cut(s) | 243, 855, 1383 |
| BtrI | CACGTC | 1 cut(s) | 130 |
| BtsCI | GGATG | 7 cut(s) | 430, 676, 1029, 1033, 1471, 1756, 2594 |
| BtsI | GCAGTG | 1 cut(s) | 118 |
| BtsIMutI | CAGTG | 4 cut(s) | 118, 328, 1695, 2305 |
| BveI | ACCTGC | 2 cut(s) | 2059, 2395 |
| Cac8I | GCNNGC | 3 cut(s) | 641, 1551, 1885 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2348 |
| CfoI | GCGC | 2 cut(s) | 665, 728 |
| Cfr10I | RCCGGY | 1 cut(s) | 2236 |
| Cfr13I | GGNCC | 3 cut(s) | 404, 1496, 2137 |
| CseI | GACGC | 1 cut(s) | 2271 |
| Csp6I | GTAC | 4 cut(s) | 96, 1383, 2151, 2781 |
| CspAI | ACCGGT | 1 cut(s) | 2236 |
| CviAII | CATG | 8 cut(s) | 904, 1055, 1403, 1655, 1682, 1737, 1741, 1973 |
| CviQI | GTAC | 4 cut(s) | 96, 1383, 2151, 2781 |
| DdeI | CTNAG | 6 cut(s) | 408, 527, 1223, 1239, 1779, 2734 |
| DpnI | GATC | 6 cut(s) | 484, 591, 1036, 1308, 1767, 1830 |
| DpnII | GATC | 6 cut(s) | 482, 589, 1034, 1306, 1765, 1828 |
| DraI | TTTAAA | 1 cut(s) | 2605 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 712, 2680 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 712, 2680 |
| Eam1104I | CTCTTC | 2 cut(s) | 990, 1329 |
| EarI | CTCTTC | 2 cut(s) | 990, 1329 |
| Eco130I | CCWWGG | 1 cut(s) | 1860 |
| Eco24I | GRGCYC | 1 cut(s) | 12 |
| Eco31I | GGTCTC | 1 cut(s) | 2711 |
| Eco47I | GGWCC | 2 cut(s) | 404, 1496 |
| Eco57I | CTGAAG | 7 cut(s) | 304, 769, 774, 822, 1473, 2553, 2565 |
| Eco81I | CCTNAGG | 1 cut(s) | 408 |
| Eco88I | CYCGRG | 1 cut(s) | 2611 |
| EcoRI | GAATTC | 2 cut(s) | 108, 1966 |
| EcoRII | CCWGG | 4 cut(s) | 1255, 1266, 1925, 2597 |
| EcoT14I | CCWWGG | 1 cut(s) | 1860 |
| EcoT22I | ATGCAT | 2 cut(s) | 1742, 1978 |
| EcoT38I | GRGCYC | 1 cut(s) | 12 |
| ErhI | CCWWGG | 1 cut(s) | 1860 |
| FaeI | CATG | 8 cut(s) | 907, 1058, 1406, 1658, 1685, 1740, 1744, 1976 |
| FaqI | GGGAC | 4 cut(s) | 363, 951, 1938, 2008 |
| FatI | CATG | 8 cut(s) | 903, 1054, 1402, 1654, 1681, 1736, 1740, 1972 |
| FauNDI | CATATG | 1 cut(s) | 975 |
| FbaI | TGATCA | 1 cut(s) | 1765 |
| FblI | GTMKAC | 3 cut(s) | 67, 476, 1252 |
| Fnu4HI | GCNGC | 6 cut(s) | 137, 240, 1476, 1630, 1881, 2549 |
| FokI | GGATG | 7 cut(s) | 437, 683, 1036, 1040, 1478, 1763, 2581 |
| FriOI | GRGCYC | 1 cut(s) | 12 |
| Fsp4HI | GCNGC | 6 cut(s) | 137, 240, 1476, 1630, 1881, 2549 |
| FspBI | CTAG | 8 cut(s) | 660, 855, 1209, 1316, 1571, 1884, 2112, 2430 |
| GlaI | GCGC | 2 cut(s) | 664, 727 |
| GluI | GCNGC | 6 cut(s) | 137, 240, 1476, 1630, 1881, 2549 |
| GsaI | CCCAGC | 2 cut(s) | 1919, 2169 |
| GsuI | CTGGAG | 2 cut(s) | 452, 1278 |
| HaeIII | GGCC | 1 cut(s) | 2138 |
| HapII | CCGG | 4 cut(s) | 480, 578, 948, 2237 |
| HgaI | GACGC | 1 cut(s) | 2271 |
| HhaI | GCGC | 2 cut(s) | 665, 728 |
| Hin1II | CATG | 8 cut(s) | 907, 1058, 1406, 1658, 1685, 1740, 1744, 1976 |
| Hin6I | GCGC | 2 cut(s) | 663, 726 |
| HinP1I | GCGC | 2 cut(s) | 663, 726 |
| HincII | GTYRAC | 3 cut(s) | 68, 477, 1114 |
| HindII | GTYRAC | 3 cut(s) | 68, 477, 1114 |
| HindIII | AAGCTT | 2 cut(s) | 1377, 2742 |
| HpaII | CCGG | 4 cut(s) | 480, 578, 948, 2237 |
| HphI | GGTGA | 7 cut(s) | 53, 617, 1673, 1838, 2277, 2312, 2504 |
| Hpy166II | GTNNAC | 6 cut(s) | 68, 287, 477, 1114, 1253, 2769 |
| Hpy188III | TCNNGA | 5 cut(s) | 79, 348, 407, 1373, 2736 |
| Hpy8I | GTNNAC | 6 cut(s) | 68, 287, 477, 1114, 1253, 2769 |
| Hpy99I | CGWCG | 3 cut(s) | 69, 72, 131 |
| HpyCH4IV | ACGT | 3 cut(s) | 129, 371, 544 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 81, 1475, 1737, 1880 |
| HpyF3I | CTNAG | 6 cut(s) | 408, 527, 1223, 1239, 1779, 2734 |
| HpySE526I | ACGT | 3 cut(s) | 129, 371, 544 |
| Hsp92II | CATG | 8 cut(s) | 907, 1058, 1406, 1658, 1685, 1740, 1744, 1976 |
| HspAI | GCGC | 2 cut(s) | 663, 726 |
| Ksp22I | TGATCA | 1 cut(s) | 1765 |
| Kzo9I | GATC | 6 cut(s) | 482, 589, 1034, 1306, 1765, 1828 |
| LmnI | GCTCC | 5 cut(s) | 7, 433, 469, 1817, 1986 |
| Lsp1109I | GCAGC | 4 cut(s) | 148, 251, 1867, 2535 |
| LweI | GCATC | 6 cut(s) | 832, 1406, 1456, 1827, 2166, 2603 |
| MaeI | CTAG | 8 cut(s) | 660, 855, 1209, 1316, 1571, 1884, 2112, 2430 |
| MaeII | ACGT | 3 cut(s) | 129, 371, 544 |
| MaeIII | GTNAC | 8 cut(s) | 530, 873, 1661, 1790, 2242, 2283, 2474, 2625 |
| MalI | GATC | 6 cut(s) | 484, 591, 1036, 1308, 1767, 1830 |
| MboI | GATC | 6 cut(s) | 482, 589, 1034, 1306, 1765, 1828 |
| MfeI | CAATTG | 2 cut(s) | 1146, 2685 |
| MhlI | GDGCHC | 2 cut(s) | 12, 1131 |
| MlyI | GAGTC | 5 cut(s) | 545, 1157, 1990, 2029, 2726 |
| MmeI | TCCRAC | 2 cut(s) | 648, 712 |
| Mph1103I | ATGCAT | 2 cut(s) | 1742, 1978 |
| MslI | CAYNNNNRTG | 4 cut(s) | 830, 978, 1659, 2490 |
| MspI | CCGG | 4 cut(s) | 480, 578, 948, 2237 |
| MspR9I | CCNGG | 4 cut(s) | 1257, 1268, 1927, 2599 |
| MunI | CAATTG | 2 cut(s) | 1146, 2685 |
| Mva1269I | GAATGC | 3 cut(s) | 641, 643, 1594 |
| MvaI | CCWGG | 4 cut(s) | 1257, 1268, 1927, 2599 |
| MvnI | CGCG | 1 cut(s) | 665 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 81, 1475, 1737, 1880 |
| NdeI | CATATG | 1 cut(s) | 975 |
| NdeII | GATC | 6 cut(s) | 482, 589, 1034, 1306, 1765, 1828 |
| NheI | GCTAGC | 1 cut(s) | 1883 |
| NlaIII | CATG | 8 cut(s) | 907, 1058, 1406, 1658, 1685, 1740, 1744, 1976 |
| NmuCI | GTSAC | 6 cut(s) | 873, 1661, 1790, 2242, 2283, 2625 |
| NsiI | ATGCAT | 2 cut(s) | 1742, 1978 |
| NspV | TTCGAA | 2 cut(s) | 106, 363 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1546 |
| PctI | GAATGC | 3 cut(s) | 641, 643, 1594 |
| PfeI | GAWTC | 7 cut(s) | 233, 910, 1329, 1852, 2617, 2663, 2677 |
| PflFI | GACNNNGTC | 1 cut(s) | 1196 |
| PinAI | ACCGGT | 1 cut(s) | 2236 |
| PkrI | GCNGC | 6 cut(s) | 138, 241, 1477, 1631, 1882, 2550 |
| PleI | GAGTC | 5 cut(s) | 545, 1157, 1990, 2029, 2726 |
| PpsI | GAGTC | 5 cut(s) | 545, 1157, 1990, 2029, 2726 |
| PshBI | ATTAAT | 2 cut(s) | 153, 381 |
| Psp6I | CCWGG | 4 cut(s) | 1255, 1266, 1925, 2597 |
| PspFI | CCCAGC | 2 cut(s) | 1915, 2165 |
| PspGI | CCWGG | 4 cut(s) | 1255, 1266, 1925, 2597 |
| PspPI | GGNCC | 3 cut(s) | 404, 1496, 2137 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2348 |
| PsyI | GACNNNGTC | 1 cut(s) | 1196 |
| RsaI | GTAC | 4 cut(s) | 97, 1384, 2152, 2782 |
| RsaNI | GTAC | 4 cut(s) | 96, 1383, 2151, 2781 |
| RseI | CAYNNNNRTG | 4 cut(s) | 830, 978, 1659, 2490 |
| SalI | GTCGAC | 2 cut(s) | 66, 475 |
| SatI | GCNGC | 6 cut(s) | 137, 240, 1476, 1630, 1881, 2549 |
| Sau3AI | GATC | 6 cut(s) | 482, 589, 1034, 1306, 1765, 1828 |
| Sau96I | GGNCC | 3 cut(s) | 404, 1496, 2137 |
| ScaI | AGTACT | 1 cut(s) | 2152 |
| SchI | GAGTC | 5 cut(s) | 545, 1157, 1990, 2029, 2726 |
| ScrFI | CCNGG | 4 cut(s) | 1257, 1268, 1927, 2599 |
| SduI | GDGCHC | 2 cut(s) | 12, 1131 |
| SfaNI | GCATC | 6 cut(s) | 832, 1406, 1456, 1827, 2166, 2603 |
| SfcI | CTRYAG | 4 cut(s) | 567, 1617, 2085, 2403 |
| SfuI | TTCGAA | 2 cut(s) | 106, 363 |
| SgrDI | CGTCGACG | 1 cut(s) | 66 |
| SinI | GGWCC | 2 cut(s) | 404, 1496 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 830, 978, 1659, 2490 |
| SmlI | CTYRAG | 2 cut(s) | 77, 2527 |
| SmoI | CTYRAG | 2 cut(s) | 77, 2527 |
| SsiI | CCGC | 3 cut(s) | 1347, 1476, 1630 |
| SspI | AATATT | 1 cut(s) | 2752 |
| SspMI | CTAG | 8 cut(s) | 660, 855, 1209, 1316, 1571, 1884, 2112, 2430 |
| StyD4I | CCNGG | 4 cut(s) | 1255, 1266, 1925, 2597 |
| StyI | CCWWGG | 1 cut(s) | 1860 |
| TaiI | ACGT | 3 cut(s) | 132, 374, 547 |
| TaqI | TCGA | 7 cut(s) | 67, 106, 363, 476, 1324, 1332, 2636 |
| TatI | WGTACW | 3 cut(s) | 1382, 2150, 2780 |
| TauI | GCSGC | 2 cut(s) | 1478, 1632 |
| TfiI | GAWTC | 7 cut(s) | 233, 910, 1329, 1852, 2617, 2663, 2677 |
| TscAI | CASTG | 4 cut(s) | 125, 328, 1695, 2305 |
| TseFI | GTSAC | 6 cut(s) | 873, 1661, 1790, 2242, 2283, 2625 |
| TseI | GCWGC | 4 cut(s) | 136, 239, 1880, 2548 |
| Tsp45I | GTSAC | 6 cut(s) | 873, 1661, 1790, 2242, 2283, 2625 |
| TspGWI | ACGGA | 1 cut(s) | 2407 |
| TspRI | CASTG | 4 cut(s) | 125, 328, 1695, 2305 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1196 |
| VpaK11BI | GGWCC | 2 cut(s) | 404, 1496 |
| VspI | ATTAAT | 2 cut(s) | 153, 381 |
| XapI | RAATTY | 6 cut(s) | 108, 609, 1091, 1157, 1673, 1966 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 980, 1640 |
| XmiI | GTMKAC | 3 cut(s) | 67, 476, 1252 |
| XspI | CTAG | 8 cut(s) | 660, 855, 1209, 1316, 1571, 1884, 2112, 2430 |
| ZrmI | AGTACT | 1 cut(s) | 2152 |
| Zsp2I | ATGCAT | 2 cut(s) | 1742, 1978 |