Rroxscaffold_4G00279390

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012960
Physical Location & Seq
Reverse (-)
2187650 .. 2189465
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279390.1

Sequence Viewer

Length: 1254 bp
ATGGAGTATTCTACCCAACAACTAGTTATTCCAAAGAATGAAGAAAACCCACTTGAATTTGACTACTTAGAGTACTACTATCAAGACCCATCTCAAAATAGTACTACTTCGTTATTTGAAGCTCCACTGCTTGAAGATTTACATGACCATGAATTCAGTTCGCTAGCTTTGCCATTACCAGAAGATTACAACCAAATTCCCCACATGGGTTTTCAAGGACTTGAAGATTTTAGCACCTGGGATTTTACTGCTTTGGACATCACTACTGCTGTTTCATCACCATCTCATTGTGATAATCATGTGCTTGATGAAAAGCCTCTTCCAACAATGGTGGATTCTTTTGACTACTTGGACAATGTCCCAAGTGATTCTGTTCATGGTGAAGTTTCATTCAAGATTGAAAGATCTGGTTTTTCATCATCTCATTGTGATTCTTTGGTGTTTGATGAAAAGCCTCTTACAACAATGGTGGAGTCCTTTACCTACTTGGACAATGTCCCAAGTGATTTGGGTCAGCATGAAGTTTCAATGATGACTGAAAGCTGTGGATTTTCATCATCTCATTGTGATTCTGTGGTGTTCAATGAAAAGCCCATTTCAACAATGGTAGAGTCATTTGACAACTCAAACAATGTCCCGAGTGTTTTGGGTCACCATGAAGCTTCCATGAGGACTGAAAGCGCTACTGCTTTTGCGTCGTCCCATAGTAATTCTCTGGTGCTTTATGAAAAACCCCTTTCAACAATCGTGGATTCTTTCGACTACTCTGATATTCCTACACCTGATTTGGGCCATGATGAAGTTTCAGTGACGATTGAAAATGGGTTTCCTAGTTGTGACATATCAGACATTAGTTGTAAAAGAGAGACAAGTAATAGAAGGAGATATAATACAGAGATGAAGATCAAGTCTGATTCTTTAGAATTTGAGGAGATAAAGAAGTACTTTGACCTCCCCATAGCAAAAGCAGCCGAGGAACTGAAGGTGGGAGTGACTCTGTTGAAGAGGAGGTGCAGGGAGCTCAACATCATGAGGTGGCCTCACAGAAAGATTAGGAGCTTGAACTCTCTCATTGAAACTCTCAAGGGAATGGGTTTGAGAAATGAGGTAAAGATGCTGGAGGAGAACAAAAGGCTTCTAGAGCAAGTGCCAAACATGGAGCTAACAAAGAGAACCAAAAAGCTGAGGCAGTCTATTTTCAAAGCCAACTACAACTACAAAAAGCAGATGTCTTTGTCTTCGTTGCTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

417

Amino Acids

47.54

Weight (kDa)

4.88

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 306 - 354 2.9e-23 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53040
fragaria_vesca FvH4_7g31350
malus_domestica MD01G1217600.v1.1 MD07G1286800.v1.1
prunus_persica Prupe.2G308900_v2.0.a1 Prupe.2G308900_v2.0.a1
pyrus_communis pycom01g22770 pycom07g26010
rosa_chinensis RchiOBHm_Chr1g0380421
rosa_laevigata RLG00000026302
rosa_multiflora Rmu_sc0005371.1_g000008
rosa_roxburghii Rroxscaffold_4G00279390
rosa_rugosa Rorug01G0421000
rosa_samantha Rh1AG445300 Rh1BG400600 Rh1CG415000 Rh1DG430700
rosa_wichuraiana Rw1G038750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 56, 152, 195, 923
AcuI CTGAAG 1 cut(s) 1001
AfaI GTAC 3 cut(s) 74, 103, 944
AfeI AGCGCT 1 cut(s) 682
AfiI CCNNNNNNNGG 2 cut(s) 206, 788
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 8 cut(s) 122, 167, 543, 662, 1021, 1059, 1162, 1183
AluI AGCT 8 cut(s) 122, 167, 543, 662, 1021, 1059, 1162, 1183
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 1 cut(s) 860
Ama87I CYCGRG 1 cut(s) 637
Aor51HI AGCGCT 1 cut(s) 682
AoxI GGCC 2 cut(s) 790, 1037
ApeKI GCWGC 1 cut(s) 968
ApoI RAATTY 4 cut(s) 56, 152, 195, 923
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 1 cut(s) 790
AsuHPI GGTGA 3 cut(s) 270, 392, 644
AsuNHI GCTAGC 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 637
BanII GRGCYC 1 cut(s) 1023
BbsI GAAGAC 1 cut(s) 1230
Bbv12I GWGCWC 1 cut(s) 1023
BbvCI CCTCAGC 1 cut(s) 1184
BbvI GCAGC 1 cut(s) 980
BccI CCATC 2 cut(s) 97, 289
BciT130I CCWGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 860
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 4 cut(s) 23, 164, 831, 1139
BfoI RGCGCY 1 cut(s) 684
BglII AGATCT 1 cut(s) 404
BisI GCNGC 1 cut(s) 969
BlsI GCNGC 1 cut(s) 970
BmcAI AGTACT 3 cut(s) 74, 103, 944
Bme1390I CCNGG 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 637
BmgT120I GGNCC 1 cut(s) 790
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 1104
BmtI GCTAGC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 1230
BplI GAGNNNNNCTC 2 cut(s) 1024, 1056
BpmI CTGGAG 1 cut(s) 1139
Bpu10I CCTNAGC 1 cut(s) 1184
BpuEI CTTGAG 1 cut(s) 1067
BsaBI GATNNNNATC 2 cut(s) 553, 902
BsaJI CCNNGG 2 cut(s) 237, 972
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 788
Bse8I GATNNNNATC 2 cut(s) 553, 902
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 237, 972
BseJI GATNNNNATC 2 cut(s) 553, 902
BseLI CCNNNNNNNGG 2 cut(s) 206, 788
BseMII CTCAG 1 cut(s) 1175
BseRI GAGGAG 3 cut(s) 944, 1021, 1136
BseXI GCAGC 1 cut(s) 980
BsgI GTGCAG 1 cut(s) 1033
BshFI GGCC 2 cut(s) 792, 1039
BsiHKAI GWGCWC 1 cut(s) 1023
BsiHKCI CYCGRG 1 cut(s) 637
BslFI GGGAC 4 cut(s) 344, 482, 620, 685
BslI CCNNNNNNNGG 2 cut(s) 206, 788
BsmAI GTCTC 1 cut(s) 860
BsmFI GGGAC 4 cut(s) 344, 482, 620, 685
BsnI GGCC 2 cut(s) 792, 1039
BsoBI CYCGRG 1 cut(s) 637
Bsp1286I GDGCHC 1 cut(s) 1023
Bsp143I GATC 2 cut(s) 404, 903
BspANI GGCC 2 cut(s) 792, 1039
BspCNI CTCAG 1 cut(s) 1176
BspHI TCATGA 1 cut(s) 1029
BspOI GCTAGC 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 237, 972
BssMI GATC 2 cut(s) 404, 903
Bst2UI CCWGG 1 cut(s) 238
Bst6I CTCTTC 2 cut(s) 324, 998
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 67, 1184
BstEII GGTNACC 1 cut(s) 650
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 2 cut(s) 407, 906
BstMAI GTCTC 1 cut(s) 860
BstMBI GATC 2 cut(s) 404, 903
BstMWI GCNNNNNNNGC 3 cut(s) 169, 968, 1141
BstNI CCWGG 1 cut(s) 238
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 980
BstV2I GAAGAC 1 cut(s) 1230
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 2 cut(s) 792, 1039
BtsI GCAGTG 1 cut(s) 125
BtsIMutI CAGTG 2 cut(s) 125, 813
Cac8I GCNNGC 1 cut(s) 165
CciI TCATGA 1 cut(s) 1029
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 1 cut(s) 790
CseI GACGC 1 cut(s) 684
Csp6I GTAC 3 cut(s) 73, 102, 943
CspCI CAANNNNNGTGG 6 cut(s) 312, 347, 450, 485, 729, 764
CviQI GTAC 3 cut(s) 73, 102, 943
DdeI CTNAG 2 cut(s) 67, 1184
DpnI GATC 2 cut(s) 406, 905
DpnII GATC 2 cut(s) 404, 903
Eam1104I CTCTTC 2 cut(s) 324, 998
EarI CTCTTC 2 cut(s) 324, 998
Ecl136II GAGCTC 1 cut(s) 1021
Eco24I GRGCYC 1 cut(s) 1023
Eco47III AGCGCT 1 cut(s) 682
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 1 cut(s) 1001
Eco88I CYCGRG 1 cut(s) 637
Eco91I GGTNACC 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 1021
EcoO65I GGTNACC 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 1023
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FaqI GGGAC 4 cut(s) 344, 482, 620, 685
Fnu4HI GCNGC 1 cut(s) 969
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 1 cut(s) 969
FspBI CTAG 4 cut(s) 23, 164, 831, 1139
GlaI GCGC 1 cut(s) 682
GluI GCNGC 1 cut(s) 969
GsuI CTGGAG 1 cut(s) 1139
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 2 cut(s) 792, 1039
HgaI GACGC 1 cut(s) 684
HhaI GCGC 1 cut(s) 683
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 660
HinfI GANTC 9 cut(s) 335, 368, 431, 473, 569, 611, 752, 914, 994
HphI GGTGA 3 cut(s) 270, 392, 644
Hpy188I TCNGA 3 cut(s) 769, 847, 913
Hpy188III TCNNGA 5 cut(s) 83, 394, 637, 1030, 1139
Hpy99I CGWCG 1 cut(s) 700
HpyAV CCTTC 2 cut(s) 873, 976
HpyCH4V TGCA 1 cut(s) 1014
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 968, 1141
HpyF3I CTNAG 2 cut(s) 67, 1184
HspAI GCGC 1 cut(s) 681
Kzo9I GATC 2 cut(s) 404, 903
LmnI GCTCC 4 cut(s) 127, 1018, 1056, 1159
LpnPI CCDG 8 cut(s) 192, 223, 250, 393, 701, 795, 1000, 1103
Lsp1109I GCAGC 1 cut(s) 980
LweI GCATC 1 cut(s) 1104
MaeI CTAG 4 cut(s) 23, 164, 831, 1139
MaeIII GTNAC 4 cut(s) 650, 808, 836, 991
MalI GATC 2 cut(s) 406, 905
MboI GATC 2 cut(s) 404, 903
MboII GAAGA 8 cut(s) 53, 146, 194, 236, 311, 913, 1015, 1230
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 1 cut(s) 1023
MluCI AATT 5 cut(s) 56, 152, 195, 709, 923
MlyI GAGTC 3 cut(s) 482, 620, 988
MmeI TCCRAC 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 169, 968, 1141
NdeII GATC 2 cut(s) 404, 903
NheI GCTAGC 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 997
NmuCI GTSAC 4 cut(s) 650, 808, 836, 991
PagI TCATGA 1 cut(s) 1029
PfeI GAWTC 6 cut(s) 335, 368, 431, 569, 752, 914
PflFI GACNNNGTC 2 cut(s) 356, 494
PkrI GCNGC 1 cut(s) 970
PleI GAGTC 3 cut(s) 481, 619, 988
PpsI GAGTC 3 cut(s) 481, 619, 988
Psp124BI GAGCTC 1 cut(s) 1023
Psp6I CCWGG 1 cut(s) 236
PspEI GGTNACC 1 cut(s) 650
PspGI CCWGG 1 cut(s) 236
PspPI GGNCC 1 cut(s) 790
PsuI RGATCY 1 cut(s) 404
PsyI GACNNNGTC 2 cut(s) 356, 494
RsaI GTAC 3 cut(s) 74, 103, 944
RsaNI GTAC 3 cut(s) 73, 102, 943
RseI CAYNNNNRTG 1 cut(s) 147
SacI GAGCTC 1 cut(s) 1023
SatI GCNGC 1 cut(s) 969
Sau3AI GATC 2 cut(s) 404, 903
Sau96I GGNCC 1 cut(s) 790
ScaI AGTACT 3 cut(s) 74, 103, 944
SchI GAGTC 3 cut(s) 482, 620, 988
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 1023
SfaNI GCATC 1 cut(s) 1104
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 1082
SmoI CTYRAG 1 cut(s) 1082
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 5 cut(s) 56, 152, 195, 709, 923
SspMI CTAG 4 cut(s) 23, 164, 831, 1139
SstI GAGCTC 1 cut(s) 1023
StyD4I CCNGG 1 cut(s) 236
TaqI TCGA 1 cut(s) 759
TasI AATT 5 cut(s) 56, 152, 195, 709, 923
TatI WGTACW 3 cut(s) 72, 101, 942
TfiI GAWTC 6 cut(s) 335, 368, 431, 569, 752, 914
TscAI CASTG 2 cut(s) 132, 813
TseFI GTSAC 4 cut(s) 650, 808, 836, 991
TseI GCWGC 1 cut(s) 968
Tsp45I GTSAC 4 cut(s) 650, 808, 836, 991
TspRI CASTG 2 cut(s) 132, 813
Tth111I GACNNNGTC 2 cut(s) 356, 494
XapI RAATTY 4 cut(s) 56, 152, 195, 923
XbaI TCTAGA 1 cut(s) 1138
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XspI CTAG 4 cut(s) 23, 164, 831, 1139
ZrmI AGTACT 3 cut(s) 74, 103, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.