Rorug01G0421000

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012960
Physical Location & Seq
Reverse (-)
52237320 .. 52239806
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0421000.1

Sequence Viewer

Length: 1032 bp
ATGATGTTCGGCGGCAGAAGCATGGGCGGCGGTGGCGGCGGAGGAAGTATGTTCCGCACAGTCAGCAGGGCGGCGCTGACTAGAACCACCGGTGTTGCAATCCAAGAACCCATCACTTCTTCGAGTTCTAACACCAACACAACCACCACGACTGCTACCAGTCCTTCGGCTTCTAGGAATACCCAGAAACCCGGTTCGGTTAGTAACCTCTGTCTCTCTTCTCCTACCTCTCCGAATTGTGGGCCCGTTTCTGCGAGTTCCGACGGGCACAACTGGCCCACTTCGCCTCAGTTTGATGATTTCGATTGGGTTTCTGTGGACGGGAGTGAAGATGTTGAGAAAGCTCATGAGTTTCTTGATGACTTTGTTCTTGGACCTGTTCCTTCTGGAGATGAAGTTCACAACGCTGTTTCTGCTCTTCAACAGGTGTTCACTCCGACTCATCATCCCCAGTTCATCCGGGATAAATTTGGTTCCGAGTACTTGGACAAGGATGTAGCTGATCAGATTTTGAGTGCTTCTGGTTCGGTGCAGCGAGTATCTTCATTTGGGACAGAATCAGATTGGATGGAGCCTTCTGCTTACCTTTGTAATTCCCAGCCTCAGGGATGTCAAAGAGTTTATGAGGCTTTCAGTTTATTGCAGAATGAGTCATCTGTTCAGAGAATGGTGGTTTCATTGTCATCTGATAGAGCAGTTTGGGATGCTGTGATGAATAATGAGGTGGTGAGGGAGCTGAGGGAATCCTTCTATGCAGCTGAAGACAATAGTTCCCAGAGTCCATGTGAGGATTCTGATGATAACAGTACAGCAACAAACTTTTTGAGATGGATCTTTCAAAATACCTATGGAAAGGTAATGGAGGTAATAGAGAACATTACCAAGCTTTTTGATCACTTGCTTCAACCTCAAGGCAGTGGCAAGGCGAAAGCTGAAGCTGGTAATCTGTTTGAGGACAGGCTGAGAACATCAGTCATGCTCTCTGTCGTGGTCCTCTTGGTTGTGGTGGTTACTCGAACCCACAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

343

Amino Acids

37.15

Weight (kDa)

4.73

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53040
fragaria_vesca FvH4_7g31350
malus_domestica MD01G1217600.v1.1 MD07G1286800.v1.1
prunus_persica Prupe.2G308900_v2.0.a1 Prupe.2G308900_v2.0.a1
pyrus_communis pycom01g22770 pycom07g26010
rosa_chinensis RchiOBHm_Chr1g0380421
rosa_laevigata RLG00000026302
rosa_multiflora Rmu_sc0005371.1_g000008
rosa_roxburghii Rroxscaffold_4G00279390
rosa_rugosa Rorug01G0421000
rosa_samantha Rh1AG445300 Rh1BG400600 Rh1CG415000 Rh1DG430700
rosa_wichuraiana Rw1G038750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 12, 27, 30, 36, 39, 55, 71
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 2 cut(s) 780, 954
AfaI GTAC 2 cut(s) 482, 808
AfiI CCNNNNNNNGG 2 cut(s) 239, 604
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 3 cut(s) 422, 839, 905
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 7 cut(s) 344, 500, 736, 758, 886, 932, 938
AluI AGCT 7 cut(s) 344, 500, 736, 758, 886, 932, 938
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 839
AoxI GGCC 2 cut(s) 242, 275
ApaI GGGCCC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 532, 755
ApoI RAATTY 1 cut(s) 467
AsiGI ACCGGT 1 cut(s) 89
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 5 cut(s) 242, 243, 276, 374, 991
AsuC2I CCSGG 2 cut(s) 192, 461
AsuHPI GGTGA 1 cut(s) 739
AvaII GGWCC 2 cut(s) 374, 991
AxyI CCTNAGG 1 cut(s) 603
BaeGI GKGCMC 2 cut(s) 246, 270
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 768
BbvCI CCTCAGC 1 cut(s) 737
BbvI GCAGC 2 cut(s) 544, 767
BccI CCATC 3 cut(s) 119, 562, 822
BclI TGATCA 2 cut(s) 502, 892
BcnI CCSGG 2 cut(s) 192, 461
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 2 cut(s) 81, 174
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 6 cut(s) 13, 28, 37, 72, 533, 756
BlsI GCNGC 6 cut(s) 14, 29, 38, 73, 534, 757
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 2 cut(s) 192, 461
Bme18I GGWCC 2 cut(s) 374, 991
BmgT120I GGNCC 5 cut(s) 242, 243, 276, 374, 991
BmiI GGNNCC 3 cut(s) 244, 475, 573
BmrFI CCNGG 2 cut(s) 192, 461
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 1 cut(s) 694
BmuI ACTGGG 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 768
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 894
BpuMI CCSGG 2 cut(s) 192, 461
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 604
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 159, 278, 451
Bse21I CCTNAGG 1 cut(s) 603
BseGI GGATG 6 cut(s) 445, 456, 499, 573, 614, 709
BseLI CCNNNNNNNGG 2 cut(s) 239, 604
BseMII CTCAG 4 cut(s) 302, 617, 728, 953
BseNI ACTGG 3 cut(s) 159, 278, 451
BseSI GKGCMC 2 cut(s) 246, 270
BseXI GCAGC 2 cut(s) 544, 767
BseYI CCCAGC 1 cut(s) 597
BsgI GTGCAG 1 cut(s) 551
BshFI GGCC 2 cut(s) 244, 277
BshTI ACCGGT 1 cut(s) 89
BsiSI CCGG 3 cut(s) 90, 192, 460
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 2 cut(s) 239, 604
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 565
BsnI GGCC 2 cut(s) 244, 277
Bsp120I GGGCCC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 246, 270
Bsp143I GATC 3 cut(s) 502, 831, 892
BspACI CCGC 7 cut(s) 12, 27, 30, 36, 39, 55, 71
BspANI GGCC 2 cut(s) 244, 277
BspCNI CTCAG 4 cut(s) 301, 616, 729, 954
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 3 cut(s) 244, 475, 573
BspPI GGATC 1 cut(s) 839
BspQI GCTCTTC 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 3 cut(s) 159, 278, 451
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 3 cut(s) 502, 831, 892
Bst4CI ACNGT 3 cut(s) 61, 806, 1025
Bst6I CTCTTC 2 cut(s) 223, 423
BstDEI CTNAG 4 cut(s) 288, 603, 737, 962
BstF5I GGATG 6 cut(s) 445, 456, 499, 573, 614, 709
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 3 cut(s) 505, 834, 895
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 502, 831, 892
BstMWI GCNNNNNNNGC 8 cut(s) 18, 27, 33, 36, 63, 274, 283, 413
BstSCI CCNGG 2 cut(s) 190, 459
BstSLI GKGCMC 2 cut(s) 246, 270
BstV1I GCAGC 2 cut(s) 544, 767
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 1 cut(s) 831
BstYI RGATCY 1 cut(s) 831
Bsu36I CCTNAGG 1 cut(s) 603
BsuRI GGCC 2 cut(s) 244, 277
BtsCI GGATG 6 cut(s) 445, 456, 499, 573, 614, 709
BtsI GCAGTG 1 cut(s) 922
BtsIMutI CAGTG 2 cut(s) 922, 1030
CciI TCATGA 1 cut(s) 346
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 5 cut(s) 242, 243, 276, 374, 991
Csp6I GTAC 2 cut(s) 481, 807
CspAI ACCGGT 1 cut(s) 89
CspCI CAANNNNNGTGG 3 cut(s) 76, 111, 1010
CviAII CATG 4 cut(s) 22, 347, 783, 976
CviQI GTAC 2 cut(s) 481, 807
DdeI CTNAG 4 cut(s) 288, 603, 737, 962
DpnI GATC 3 cut(s) 504, 833, 894
DpnII GATC 3 cut(s) 502, 831, 892
Eam1104I CTCTTC 2 cut(s) 223, 423
EarI CTCTTC 2 cut(s) 223, 423
EciI GGCGGA 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 374, 991
Eco57I CTGAAG 2 cut(s) 780, 954
Eco81I CCTNAGG 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 4 cut(s) 25, 350, 786, 979
FaiI YATR 8 cut(s) 23, 50, 348, 624, 753, 784, 849, 977
FaqI GGGAC 1 cut(s) 565
FatI CATG 4 cut(s) 21, 346, 782, 975
FbaI TGATCA 2 cut(s) 502, 892
Fnu4HI GCNGC 6 cut(s) 13, 28, 37, 72, 533, 756
FokI GGATG 6 cut(s) 432, 443, 506, 580, 621, 716
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 6 cut(s) 13, 28, 37, 72, 533, 756
FspBI CTAG 2 cut(s) 81, 174
GlaI GCGC 1 cut(s) 75
GluI GCNGC 6 cut(s) 13, 28, 37, 72, 533, 756
GsaI CCCAGC 1 cut(s) 601
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 2 cut(s) 244, 277
HapII CCGG 3 cut(s) 90, 192, 460
HhaI GCGC 1 cut(s) 76
Hin1II CATG 4 cut(s) 25, 350, 786, 979
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 6 cut(s) 439, 557, 650, 743, 778, 791
HpaII CCGG 3 cut(s) 90, 192, 460
HphI GGTGA 1 cut(s) 739
Hpy166II GTNNAC 3 cut(s) 319, 400, 432
Hpy188I TCNGA 9 cut(s) 234, 262, 438, 478, 507, 562, 663, 688, 796
Hpy188III TCNNGA 3 cut(s) 347, 356, 387
Hpy8I GTNNAC 3 cut(s) 319, 400, 432
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 4 cut(s) 174, 393, 585, 757
HpyCH4III ACNGT 3 cut(s) 61, 806, 1025
HpyCH4V TGCA 4 cut(s) 98, 532, 643, 755
HpyF10VI GCNNNNNNNGC 8 cut(s) 18, 27, 33, 36, 63, 274, 283, 413
HpyF3I CTNAG 4 cut(s) 288, 603, 737, 962
Hsp92II CATG 4 cut(s) 25, 350, 786, 979
HspAI GCGC 1 cut(s) 74
Ksp22I TGATCA 2 cut(s) 502, 892
Kzo9I GATC 3 cut(s) 502, 831, 892
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 2 cut(s) 571, 733
Lsp1109I GCAGC 2 cut(s) 544, 767
LweI GCATC 1 cut(s) 694
MaeI CTAG 2 cut(s) 81, 174
MaeIII GTNAC 2 cut(s) 203, 1009
MalI GATC 3 cut(s) 504, 833, 894
MboI GATC 3 cut(s) 502, 831, 892
MboII GAAGA 6 cut(s) 111, 210, 341, 410, 534, 773
MflI RGATCY 1 cut(s) 831
MhlI GDGCHC 2 cut(s) 246, 270
MluCI AATT 3 cut(s) 235, 467, 592
MlyI GAGTC 3 cut(s) 433, 659, 787
MmeI TCCRAC 2 cut(s) 285, 461
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 3 cut(s) 90, 192, 460
MspR9I CCNGG 2 cut(s) 192, 461
MwoI GCNNNNNNNGC 8 cut(s) 18, 27, 33, 36, 63, 274, 283, 413
NciI CCSGG 2 cut(s) 192, 461
NdeII GATC 3 cut(s) 502, 831, 892
NlaIII CATG 4 cut(s) 25, 350, 786, 979
NlaIV GGNNCC 3 cut(s) 244, 475, 573
PagI TCATGA 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 423
PfeI GAWTC 3 cut(s) 557, 743, 791
PfoI TCCNGGA 1 cut(s) 459
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 6 cut(s) 14, 29, 38, 73, 534, 757
PleI GAGTC 3 cut(s) 433, 658, 786
PpsI GAGTC 3 cut(s) 433, 658, 786
PspFI CCCAGC 1 cut(s) 597
PspN4I GGNNCC 3 cut(s) 244, 475, 573
PspOMI GGGCCC 1 cut(s) 242
PspPI GGNCC 5 cut(s) 242, 243, 276, 374, 991
PsuI RGATCY 1 cut(s) 831
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 2 cut(s) 482, 808
RsaNI GTAC 2 cut(s) 481, 807
SapI GCTCTTC 1 cut(s) 423
SatI GCNGC 6 cut(s) 13, 28, 37, 72, 533, 756
Sau3AI GATC 3 cut(s) 502, 831, 892
Sau96I GGNCC 5 cut(s) 242, 243, 276, 374, 991
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 3 cut(s) 433, 659, 787
ScrFI CCNGG 2 cut(s) 192, 461
SduI GDGCHC 2 cut(s) 246, 270
SfaNI GCATC 1 cut(s) 694
SgrAI CRCCGGYG 1 cut(s) 89
SinI GGWCC 2 cut(s) 374, 991
SmlI CTYRAG 1 cut(s) 909
SmoI CTYRAG 1 cut(s) 909
Sse9I AATT 3 cut(s) 235, 467, 592
SsiI CCGC 7 cut(s) 12, 27, 30, 36, 39, 55, 71
SspMI CTAG 2 cut(s) 81, 174
StyD4I CCNGG 2 cut(s) 190, 459
TaaI ACNGT 3 cut(s) 61, 806, 1025
TaqI TCGA 3 cut(s) 122, 303, 1015
TasI AATT 3 cut(s) 235, 467, 592
TatI WGTACW 2 cut(s) 480, 806
TauI GCSGC 4 cut(s) 15, 30, 39, 74
TfiI GAWTC 3 cut(s) 557, 743, 791
TscAI CASTG 2 cut(s) 922, 1030
TseI GCWGC 2 cut(s) 532, 755
TspDTI ATGAA 5 cut(s) 408, 445, 534, 666, 728
TspRI CASTG 2 cut(s) 922, 1030
VpaK11BI GGWCC 2 cut(s) 374, 991
XapI RAATTY 1 cut(s) 467
XspI CTAG 2 cut(s) 81, 174
ZrmI AGTACT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.