Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004411

Physical Location & Seq

Genomic Coordinates Forward (+)

39613658 .. 39618180

Gene Structure 4523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2724 bp

ATGAGTACAATTGGGGGTAAGTGGGATGATGATGAGTGCTCTGTCATTGGAGACAAAGGGGATATCGGGTTCATCGATTTCAAAGATGACAAATCGGTTTGTAGTTACAACCCAGCTGAAGAGGGTCCGATTGTTATTTCAGTCCCATTCCCTCTTGTGGGAGGAAAGCAAGGTCAAAAGCCTCAATCAGTAGTTGTAGGAGAAACAGTTACGGATAAAATAACAATTGAGAACACCACCCGTAAGCCAGTGGAGCTATGGGGTGTTAAAATTTATGCCTCAACTCCAGAGGACTCTTTCACACTTTCTCTGATGGAGCCTCCAAAGAAAGACTCTGGTGTAGAAGCCATTAGAGCCTTCCTCGAGTCTGCTTCCCTCGAGGACAGAGTGCTGCAACCAGGAGACACTTTGACTGTGTGGCTGTCTTGCAAGCCCAAGGAAATTGGTATGCACACCAGCGTTGTGCAGTTTGATTTCGAGGATAATCAGATTGAACGTGCTGTTTTTCTCTTGGCTGATGACAAGATCTCCCAATCTCTGGCCTCAACAAGACCATTCGAAAGACGCACTAAAATGAAACCAATTGTTGTGGATTCCTATCATGTGGCTGTAAGCCCTAGTAGAAAAACAAAACGCCTACCCTACAAAAATAGGCTTCCGCGATATGACATTCCAAAGGAACTTAGGGATTACCTCTTGAGTGGGCACGATCCTGAATGTGTTACAGAAGGTCTTACGAGGCGGAACTATGCTGATCACTTCAAGACTTTACTGATGATGGAGGAAATACAGTTAGAGGAAAGCATGAGAAGTTATGATATGGAATATGTTAGTTTGAGGAGGAGGGGATATCATTATTTGTCCCTTGAAGTCCCAGGGCTTGCTGAGAGAAGGCCTTCACTTGTCCAAGGGGATCATGTTTTCGCCAAGCTTTCTGAGTATGCAGATGACACAACACTTAATCCATATCAGGGTTTCATTCACCATGTAGAGGCTGATGAAGTTTACTTGAAGTTTGCGCAAGATTTTCACAGTGACCACAGAGACGGTAATCTTTATAATGTGCAATTCACATATAATCGAGTTTCCATGAGAAGGTTATATCAAGCGACTGATGCTGCTGCAGAGTTAGACAGAGGGTTCCTATTTCCATCTGAGTCCCCTCAAAGATGGATTAATGCCCCAAAACTGTACCCTATACCTTCTTGTAGACTTAATGAAGAGCAGATGCGTGCAGTTGAGATGATCCTTGGCTGCAAAGGAGGACCACCTTATGTTATTCATGGACCTCCTGGCACAGGCAAGACAATGACAATAGTGGAAGCGATCCTCCAACTCTACAAAAGTCAAGCAAAAGCTCGAATTCTTGTTTGTGCACCTTCAAATAGTGCAGCAGACCACATCCTGGAGAAACTCCTCAATGAAAAGGCTGACGTAGTAGTTAAAGAACATGAAATATTCAGGCTTAATGCGCCTACCCGTCCTTATGAAGATATCAAGCCTGATTATATTAAATTTTGCTCCTCTGAGGACTATATCTTCAACTGTCCTTCACCCAAAGCCCTCAGGCGCTATAGGATCATCATATCAACCTATATGAGTGCCGCTCTTCTTTATGCAGAAGGTATCGAAAAAGGCCACTTCTCTCATATTTTCTTGGATGAGGCAGGACAAGCTTCAGAACCAGAAACCATGATCACAGTAGCCAGTCTGCATGAGAGGAATACAGTTGTTGTTCTTGCTGGAGACCCTATGCAATTAGGGCCGATCATAAACTCCAAGAAAGCAGAAGATTACTATTTGGGGATATCATACTTGGAGAGGATGTTCGACTGTGAATTTTATAGAAATGAAGATTACAGTTACGTGACAAAGTTGGTTAGAAATTACAGATGTCACCCAGACATTTTGCATCTCCCCAATGAGTTATTCTATGGAGGAGAGTTGATTGCTTGTAAAGATGACGCAGTTTCCATCATTACAAGGCTGGACTTTCTTCCGAATAAGGACTTCCCCGTGGTTTTCTTTGGCATTCAAGGTTGTGATGAGAGGGAAGGAAATAATCCATCATGGTTTAACCGGACTGAAGCTAGTAAGGTAGTGGAGGTCACTAAGAGATTGACTGCAGGAAAGAACCTGAGTGAAGAAGATATTGGGGTTATAACTCCTTACCGACAGCAAGTGCTCAAACTGAAAAAAGCTTTTGAAGATTTGGACATGCCTGACATCAAGGTTGGAAGTGTCGAGCAGTTTCAGGGACAGGAGAGGGAAGTTATCATAATATCAACTGTGCGATCAACAATCAAGCACAATGAATTTGACAGAACATACTGTTTGGGATTTCTGAGCAATCCAAAACGGTTTAATGTGGCTATTACTCGTGCCAAATCTTTGCTGATTATAATTGGGAACCCACATATTATCAGCAAGGATCCCAACTGGAATAAGCTTCTTTGGCGCTGTGTAGACAACAATTCCTATCAGGGTTGTAATCTCCCTGTCAGGCAGGAGGAATTTTCTTATGAGAACCCAACACAGGAAGATAACTGGGACAACAATGAAGAAAATGCTCAGTTCTCTAGAACTGATTCGTGGGTTCAAGGATCGTGGGAAGCAGAAACTCCGCAACCTATCCAGAACGGAGATGGAGCTGAACAGTGGCCGGAAACAGAGGTTCCTCAGCCTGTCGTTGATGAATCTGAATGGTCTGATGGCTGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004386 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0031047 GO:0035194 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0098542 GO:0098586 GO:0140098

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

907

Amino Acids

103.54

Weight (kDa)

5.22

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOV-10_beta-barrel	PF21634	272 - 357	3.4e-31	Helicase MOV-10, beta-barrel domain
ResIII	PF04851	403 - 571	1.2e-08	Type III restriction enzyme, res subunit
AAA_11	PF13086	405 - 494	1e-20	AAA domain
AAA_30	PF13604	405 - 592	8.6e-14	AAA domain
AAA_19	PF13245	423 - 589	1.1e-09	AAA domain
AAA_11	PF13086	520 - 594	1.5e-10	AAA domain
AAA_12	PF13087	604 - 805	3.1e-50	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05460 AT1G05460
fragaria_vesca	FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972
malus_domestica	MD13G1196500.v1.1
prunus_persica	Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1
pyrus_communis	pycom13g16860
rosa_chinensis	RchiOBHm_Chr4g0415581
rosa_laevigata	RLG00000008062
rosa_multiflora	Rmu_sc0004599.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359390
rosa_rugosa	Rorug04G0134800 Rorug04G0134900 Rorug04G0135000 Rorug04G0135100 Rorug04G0135200 Rorug04G0135300
rosa_samantha	Rh4AG196200 Rh4BG194900 Rh4CG206900 Rh4DG193800
rosa_wichuraiana	Rw4G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1059, 2162, 2402
AbsI	CCTCGAGG	1 cut(s)	377
Acc16I	TGCGCA	1 cut(s)	1020
AccB7I	CCANNNNNTGG	2 cut(s)	538, 1405
AccBSI	CCGCTC	1 cut(s)	1607
AccI	GTMKAC	2 cut(s)	1210, 2466
AccII	CGCG	1 cut(s)	661
AciI	CCGC	4 cut(s)	659, 742, 1605, 2624
AclWI	GGATC	8 cut(s)	704, 921, 1240, 1321, 1586, 2426, 2439, 2611
AcoI	YGGCCR	1 cut(s)	2660
AcsI	RAATTY	6 cut(s)	270, 1362, 1514, 1838, 2315, 2513
AcuI	CTGAAG	3 cut(s)	138, 1662, 2106
AfaI	GTAC	2 cut(s)	7, 1193
AfiI	CCNNNNNNNGG	9 cut(s)	157, 158, 538, 971, 991, 1095, 1298, 1405, 2536
AjnI	CCWGG	4 cut(s)	397, 874, 1291, 1404
AjuI	GAANNNNNNNTTGG	4 cut(s)	1913, 1945, 2136, 2168
AloI	GAACNNNNNNTCC	4 cut(s)	53, 85, 1811, 1843
AluBI	AGCT	9 cut(s)	116, 256, 931, 1358, 1676, 2090, 2201, 2449, 2651
AluI	AGCT	9 cut(s)	116, 256, 931, 1358, 1676, 2090, 2201, 2449, 2651
Alw21I	GWGCWC	3 cut(s)	41, 1378, 2187
Alw26I	GTCTC	4 cut(s)	45, 396, 1038, 1740
Alw44I	GTGCAC	1 cut(s)	1374
AlwI	GGATC	8 cut(s)	704, 921, 1240, 1321, 1586, 2426, 2439, 2611
Ama87I	CYCGRG	2 cut(s)	362, 377
AoxI	GGCC	5 cut(s)	540, 893, 1636, 1763, 2660
ApaLI	GTGCAC	1 cut(s)	1374
ApeKI	GCWGC	5 cut(s)	391, 1118, 1121, 1254, 1391
ApoI	RAATTY	6 cut(s)	270, 1362, 1514, 1838, 2315, 2513
AseI	ATTAAT	1 cut(s)	1176
Asp700I	GAANNNNTTC	2 cut(s)	895, 2587
AspLEI	GCGC	4 cut(s)	1021, 1474, 1572, 2460
AspS9I	GGNCC	4 cut(s)	125, 1265, 1286, 1763
AsuHPI	GGTGA	3 cut(s)	974, 1545, 1889
AsuII	TTCGAA	1 cut(s)	558
AvaI	CYCGRG	2 cut(s)	362, 377
AvaII	GGWCC	3 cut(s)	125, 1265, 1286
AxyI	CCTNAGG	1 cut(s)	1565
BaeGI	GKGCMC	2 cut(s)	708, 1378
BamHI	GGATCC	1 cut(s)	2431
BauI	CACGAG	1 cut(s)	2379
Bbv12I	GWGCWC	3 cut(s)	41, 1378, 2187
BbvCI	CCTCAGC	1 cut(s)	2679
BbvI	GCAGC	5 cut(s)	378, 1105, 1108, 1241, 1403
BccI	CCATC	8 cut(s)	307, 772, 1159, 1164, 1982, 2074, 2639, 2705
BciT130I	CCWGG	4 cut(s)	399, 876, 1293, 1406
BclI	TGATCA	2 cut(s)	754, 1695
BcoDI	GTCTC	4 cut(s)	45, 396, 1038, 1740
BfaI	CTAG	3 cut(s)	618, 2091, 2580
BfmI	CTRYAG	3 cut(s)	1122, 1573, 2124
BfoI	RGCGCY	2 cut(s)	1573, 2461
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	6 cut(s)	392, 1119, 1122, 1255, 1392, 1605
BlsI	GCNGC	6 cut(s)	393, 1120, 1123, 1256, 1393, 1606
Bme1390I	CCNGG	4 cut(s)	399, 876, 1293, 1406
Bme18I	GGWCC	3 cut(s)	125, 1265, 1286
BmeT110I	CYCGRG	2 cut(s)	362, 377
BmgT120I	GGNCC	4 cut(s)	125, 1265, 1286, 1763
BmiI	GGNNCC	6 cut(s)	126, 318, 1142, 2411, 2433, 2676
BmrFI	CCNGG	4 cut(s)	399, 876, 1293, 1406
BmrI	ACTGGG	1 cut(s)	2557
BmsI	GCATC	3 cut(s)	1105, 1218, 1921
BmuI	ACTGGG	1 cut(s)	2557
BplI	GAGNNNNNCTC	4 cut(s)	345, 377, 1591, 1623
BpmI	CTGGAG	3 cut(s)	270, 1427, 1764
Bpu10I	CCTNAGC	1 cut(s)	2679
Bpu14I	TTCGAA	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	718
Bsa29I	ATCGAT	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	1867
BsaBI	GATNNNNATC	1 cut(s)	597
BsaI	GGTCTC	1 cut(s)	1740
BsaJI	CCNNGG	6 cut(s)	435, 874, 875, 907, 1249, 2016
BsaWI	WCCGGW	1 cut(s)	2079
BsaXI	ACNNNNNCTCC	6 cut(s)	192, 222, 512, 542, 1811, 1841
Bsc4I	CCNNNNNNNGG	9 cut(s)	157, 158, 538, 971, 991, 1095, 1298, 1405, 2536
Bse1I	ACTGG	4 cut(s)	248, 1707, 2444, 2552
Bse21I	CCTNAGG	1 cut(s)	1565
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	4 cut(s)	399, 876, 1293, 1406
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	6 cut(s)	435, 874, 875, 907, 1249, 2016
BseGI	GGATG	4 cut(s)	31, 1401, 1666, 1830
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	9 cut(s)	157, 158, 538, 971, 991, 1095, 1298, 1405, 2536
BseMII	CTCAG	9 cut(s)	876, 927, 1146, 1518, 1579, 2129, 2336, 2585, 2693
BseNI	ACTGG	4 cut(s)	248, 1707, 2444, 2552
BseRI	GAGGAG	5 cut(s)	853, 856, 1406, 1513, 1953
BseSI	GKGCMC	2 cut(s)	708, 1378
BseXI	GCAGC	5 cut(s)	378, 1105, 1108, 1241, 1403
BseYI	CCCAGC	1 cut(s)	112
BsgI	GTGCAG	3 cut(s)	485, 1254, 1410
Bsh1236I	CGCG	1 cut(s)	661
BshFI	GGCC	5 cut(s)	542, 895, 1638, 1765, 2662
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	3 cut(s)	41, 1378, 2187
BsiHKCI	CYCGRG	2 cut(s)	362, 377
BsiSI	CCGG	2 cut(s)	2080, 2663
BslFI	GGGAC	6 cut(s)	128, 847, 857, 1144, 2271, 2564
BslI	CCNNNNNNNGG	9 cut(s)	157, 158, 538, 971, 991, 1095, 1298, 1405, 2536
BsmAI	GTCTC	4 cut(s)	45, 396, 1038, 1740
BsmBI	CGTCTC	1 cut(s)	1038
BsmFI	GGGAC	6 cut(s)	128, 847, 857, 1144, 2271, 2564
BsmI	GAATGC	1 cut(s)	2031
BsnI	GGCC	5 cut(s)	542, 895, 1638, 1765, 2662
Bso31I	GGTCTC	1 cut(s)	1740
BsoBI	CYCGRG	2 cut(s)	362, 377
Bsp119I	TTCGAA	1 cut(s)	558
Bsp1286I	GDGCHC	4 cut(s)	41, 708, 1378, 2187
BspACI	CCGC	4 cut(s)	659, 742, 1605, 2624
BspANI	GGCC	5 cut(s)	542, 895, 1638, 1765, 2662
BspCNI	CTCAG	9 cut(s)	877, 928, 1147, 1519, 1578, 2130, 2337, 2584, 2692
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	661
BspLI	GGNNCC	6 cut(s)	126, 318, 1142, 2411, 2433, 2676
BspMAI	CTGCAG	2 cut(s)	1126, 2128
BspPI	GGATC	8 cut(s)	704, 921, 1240, 1321, 1586, 2426, 2439, 2611
BspQI	GCTCTTC	2 cut(s)	1215, 1614
BspT104I	TTCGAA	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	1740
BsrBI	CCGCTC	1 cut(s)	1607
BsrI	ACTGG	4 cut(s)	248, 1707, 2444, 2552
BssECI	CCNNGG	6 cut(s)	435, 874, 875, 907, 1249, 2016
BssSI	CACGAG	1 cut(s)	2379
BssT1I	CCWWGG	3 cut(s)	435, 907, 1249
Bst2BI	CACGAG	1 cut(s)	2379
Bst2UI	CCWGG	4 cut(s)	399, 876, 1293, 1406
Bst6I	CTCTTC	3 cut(s)	114, 1215, 1614
BstBAI	YACGTR	1 cut(s)	1867
BstBI	TTCGAA	1 cut(s)	558
BstC8I	GCNNGC	3 cut(s)	431, 882, 1233
BstDSI	CCRYGG	1 cut(s)	2016
BstENI	CCTNNNNNAGG	1 cut(s)	1296
BstF5I	GGATG	4 cut(s)	31, 1401, 1666, 1830
BstFNI	CGCG	1 cut(s)	661
BstH2I	RGCGCY	2 cut(s)	1573, 2461
BstHHI	GCGC	4 cut(s)	1021, 1474, 1572, 2460
BstMAI	GTCTC	4 cut(s)	45, 396, 1038, 1740
BstMWI	GCNNNNNNNGC	7 cut(s)	253, 353, 1115, 1471, 1673, 1762, 2455
BstNI	CCWGG	4 cut(s)	399, 876, 1293, 1406
BstNSI	RCATGY	1 cut(s)	2221
BstSCI	CCNGG	4 cut(s)	397, 874, 1291, 1404
BstSFI	CTRYAG	3 cut(s)	1122, 1573, 2124
BstSLI	GKGCMC	2 cut(s)	708, 1378
BstUI	CGCG	1 cut(s)	661
BstV1I	GCAGC	5 cut(s)	378, 1105, 1108, 1241, 1403
BstX2I	RGATCY	2 cut(s)	525, 2431
BstYI	RGATCY	2 cut(s)	525, 2431
Bsu15I	ATCGAT	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	1565
BsuRI	GGCC	5 cut(s)	542, 895, 1638, 1765, 2662
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	2016
BtsCI	GGATG	4 cut(s)	31, 1401, 1666, 1830
BtsIMutI	CAGTG	3 cut(s)	255, 1039, 2663
Cac8I	GCNNGC	3 cut(s)	431, 882, 1233
CfoI	GCGC	4 cut(s)	1021, 1474, 1572, 2460
Cfr13I	GGNCC	4 cut(s)	125, 1265, 1286, 1763
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	2 cut(s)	573, 1973
Csp6I	GTAC	2 cut(s)	6, 1192
CspCI	CAANNNNNGTGG	4 cut(s)	570, 605, 2588, 2623
CviQI	GTAC	2 cut(s)	6, 1192
EaeI	YGGCCR	1 cut(s)	2660
Eam1104I	CTCTTC	3 cut(s)	114, 1215, 1614
EarI	CTCTTC	3 cut(s)	114, 1215, 1614
EciI	GGCGGA	1 cut(s)	757
Eco130I	CCWWGG	3 cut(s)	435, 907, 1249
Eco147I	AGGCCT	1 cut(s)	895
Eco31I	GGTCTC	1 cut(s)	1740
Eco32I	GATATC	4 cut(s)	64, 851, 1495, 1809
Eco47I	GGWCC	3 cut(s)	125, 1265, 1286
Eco57I	CTGAAG	3 cut(s)	138, 1662, 2106
Eco81I	CCTNAGG	1 cut(s)	1565
Eco88I	CYCGRG	2 cut(s)	362, 377
EcoNI	CCTNNNNNAGG	1 cut(s)	1296
EcoRI	GAATTC	1 cut(s)	1362
EcoRII	CCWGG	4 cut(s)	397, 874, 1291, 1404
EcoRV	GATATC	4 cut(s)	64, 851, 1495, 1809
EcoT14I	CCWWGG	3 cut(s)	435, 907, 1249
ErhI	CCWWGG	3 cut(s)	435, 907, 1249
Esp3I	CGTCTC	1 cut(s)	1038
FaqI	GGGAC	6 cut(s)	128, 847, 857, 1144, 2271, 2564
FbaI	TGATCA	2 cut(s)	754, 1695
FblI	GTMKAC	2 cut(s)	1210, 2466
Fnu4HI	GCNGC	6 cut(s)	392, 1119, 1122, 1255, 1392, 1605
FokI	GGATG	4 cut(s)	38, 1388, 1673, 1837
Fsp4HI	GCNGC	6 cut(s)	392, 1119, 1122, 1255, 1392, 1605
FspBI	CTAG	3 cut(s)	618, 2091, 2580
FspI	TGCGCA	1 cut(s)	1020
GlaI	GCGC	4 cut(s)	1020, 1473, 1571, 2459
GluI	GCNGC	6 cut(s)	392, 1119, 1122, 1255, 1392, 1605
GsaI	CCCAGC	1 cut(s)	116
GsuI	CTGGAG	3 cut(s)	270, 1427, 1764
HaeII	RGCGCY	2 cut(s)	1573, 2461
HaeIII	GGCC	5 cut(s)	542, 895, 1638, 1765, 2662
HapII	CCGG	2 cut(s)	2080, 2663
HgaI	GACGC	2 cut(s)	573, 1973
HhaI	GCGC	4 cut(s)	1021, 1474, 1572, 2460
Hin6I	GCGC	4 cut(s)	1019, 1472, 1570, 2458
HinP1I	GCGC	4 cut(s)	1019, 1472, 1570, 2458
HindIII	AAGCTT	4 cut(s)	929, 1674, 2199, 2447
HinfI	GANTC	7 cut(s)	293, 332, 365, 593, 1157, 2588, 2696
HpaII	CCGG	2 cut(s)	2080, 2663
HphI	GGTGA	3 cut(s)	974, 1545, 1889
Hpy166II	GTNNAC	4 cut(s)	1006, 1211, 1376, 2467
Hpy188III	TCNNGA	6 cut(s)	287, 697, 713, 763, 2580, 2635
Hpy8I	GTNNAC	4 cut(s)	1006, 1211, 1376, 2467
HpyCH4IV	ACGT	3 cut(s)	496, 1434, 1866
HpyF10VI	GCNNNNNNNGC	7 cut(s)	253, 353, 1115, 1471, 1673, 1762, 2455
HpySE526I	ACGT	3 cut(s)	496, 1434, 1866
HspAI	GCGC	4 cut(s)	1019, 1472, 1570, 2458
Ksp22I	TGATCA	2 cut(s)	754, 1695
LguI	GCTCTTC	2 cut(s)	1215, 1614
LmnI	GCTCC	4 cut(s)	253, 316, 1526, 2648
Lsp1109I	GCAGC	5 cut(s)	378, 1105, 1108, 1241, 1403
LweI	GCATC	3 cut(s)	1105, 1218, 1921
MaeI	CTAG	3 cut(s)	618, 2091, 2580
MaeII	ACGT	3 cut(s)	496, 1434, 1866
MaeIII	GTNAC	8 cut(s)	104, 208, 721, 1034, 1862, 1867, 1895, 2107
MbiI	CCGCTC	1 cut(s)	1607
MfeI	CAATTG	3 cut(s)	9, 225, 582
MflI	RGATCY	2 cut(s)	525, 2431
MhlI	GDGCHC	4 cut(s)	41, 708, 1378, 2187
MlyI	GAGTC	4 cut(s)	287, 326, 374, 1166
MmeI	TCCRAC	2 cut(s)	1357, 2215
MroXI	GAANNNNTTC	2 cut(s)	895, 2587
MseI	TTAA	9 cut(s)	267, 960, 1176, 1215, 1443, 1467, 1512, 2076, 2364
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	2080, 2663
MspR9I	CCNGG	4 cut(s)	399, 876, 1293, 1406
MunI	CAATTG	3 cut(s)	9, 225, 582
Mva1269I	GAATGC	1 cut(s)	2031
MvaI	CCWGG	4 cut(s)	399, 876, 1293, 1406
MvnI	CGCG	1 cut(s)	661
MwoI	GCNNNNNNNGC	7 cut(s)	253, 353, 1115, 1471, 1673, 1762, 2455
NlaIV	GGNNCC	6 cut(s)	126, 318, 1142, 2411, 2433, 2676
NmuCI	GTSAC	4 cut(s)	1034, 1867, 1895, 2107
NsbI	TGCGCA	1 cut(s)	1020
NspI	RCATGY	1 cut(s)	2221
NspV	TTCGAA	1 cut(s)	558
PaeR7I	CTCGAG	2 cut(s)	362, 377
PasI	CCCWGGG	1 cut(s)	875
PceI	AGGCCT	1 cut(s)	895
PciSI	GCTCTTC	2 cut(s)	1215, 1614
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	2031
PdmI	GAANNNNTTC	2 cut(s)	895, 2587
PfeI	GAWTC	3 cut(s)	593, 2588, 2696
PflMI	CCANNNNNTGG	2 cut(s)	538, 1405
PfoI	TCCNGGA	1 cut(s)	1404
PkrI	GCNGC	6 cut(s)	393, 1120, 1123, 1256, 1393, 1606
PleI	GAGTC	4 cut(s)	287, 326, 373, 1165
PpsI	GAGTC	4 cut(s)	287, 326, 373, 1165
Ppu21I	YACGTR	1 cut(s)	1867
PshBI	ATTAAT	1 cut(s)	1176
PsiI	TTATAA	3 cut(s)	1059, 2162, 2402
Psp6I	CCWGG	4 cut(s)	397, 874, 1291, 1404
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	4 cut(s)	397, 874, 1291, 1404
PspN4I	GGNNCC	6 cut(s)	126, 318, 1142, 2411, 2433, 2676
PspPI	GGNCC	4 cut(s)	125, 1265, 1286, 1763
PspXI	VCTCGAGB	2 cut(s)	362, 377
PstI	CTGCAG	2 cut(s)	1126, 2128
PsuI	RGATCY	2 cut(s)	525, 2431
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	7, 1193
RsaNI	GTAC	2 cut(s)	6, 1192
RseI	CAYNNNNRTG	1 cut(s)	572
SapI	GCTCTTC	2 cut(s)	1215, 1614
SaqAI	TTAA	9 cut(s)	267, 960, 1176, 1215, 1443, 1467, 1512, 2076, 2364
SatI	GCNGC	6 cut(s)	392, 1119, 1122, 1255, 1392, 1605
Sau96I	GGNCC	4 cut(s)	125, 1265, 1286, 1763
SchI	GAGTC	4 cut(s)	287, 326, 374, 1166
ScrFI	CCNGG	4 cut(s)	399, 876, 1293, 1406
SduI	GDGCHC	4 cut(s)	41, 708, 1378, 2187
SfaNI	GCATC	3 cut(s)	1105, 1218, 1921
SfcI	CTRYAG	3 cut(s)	1122, 1573, 2124
Sfr274I	CTCGAG	2 cut(s)	362, 377
SfuI	TTCGAA	1 cut(s)	558
SinI	GGWCC	3 cut(s)	125, 1265, 1286
SlaI	CTCGAG	2 cut(s)	362, 377
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	3 cut(s)	362, 377, 697
SmoI	CTYRAG	3 cut(s)	362, 377, 697
SseBI	AGGCCT	1 cut(s)	895
SsiI	CCGC	4 cut(s)	659, 742, 1605, 2624
SspI	AATATT	1 cut(s)	1458
SspMI	CTAG	3 cut(s)	618, 2091, 2580
StuI	AGGCCT	1 cut(s)	895
StyD4I	CCNGG	4 cut(s)	397, 874, 1291, 1404
StyI	CCWWGG	3 cut(s)	435, 907, 1249
TaiI	ACGT	3 cut(s)	499, 1437, 1869
TatI	WGTACW	1 cut(s)	5
TauI	GCSGC	1 cut(s)	1607
TfiI	GAWTC	3 cut(s)	593, 2588, 2696
Tru1I	TTAA	9 cut(s)	267, 960, 1176, 1215, 1443, 1467, 1512, 2076, 2364
Tru9I	TTAA	9 cut(s)	267, 960, 1176, 1215, 1443, 1467, 1512, 2076, 2364
TscAI	CASTG	3 cut(s)	255, 1039, 2663
TseFI	GTSAC	4 cut(s)	1034, 1867, 1895, 2107
TseI	GCWGC	5 cut(s)	391, 1118, 1121, 1254, 1391
Tsp45I	GTSAC	4 cut(s)	1034, 1867, 1895, 2107
TspGWI	ACGGA	2 cut(s)	227, 2655
TspRI	CASTG	3 cut(s)	255, 1039, 2663
Van91I	CCANNNNNTGG	2 cut(s)	538, 1405
VneI	GTGCAC	1 cut(s)	1374
VpaK11BI	GGWCC	3 cut(s)	125, 1265, 1286
VspI	ATTAAT	1 cut(s)	1176
XagI	CCTNNNNNAGG	1 cut(s)	1296
XapI	RAATTY	6 cut(s)	270, 1362, 1514, 1838, 2315, 2513
XbaI	TCTAGA	1 cut(s)	2579
XceI	RCATGY	1 cut(s)	2221
XcmI	CCANNNNNNNNNTGG	2 cut(s)	255, 2642
XhoI	CTCGAG	2 cut(s)	362, 377
XmiI	GTMKAC	2 cut(s)	1210, 2466
XmnI	GAANNNNTTC	2 cut(s)	895, 2587
XspI	CTAG	3 cut(s)	618, 2091, 2580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.