Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004411

Physical Location & Seq

Genomic Coordinates Reverse (-)

21806295 .. 21808913

Gene Structure 2619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0135200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCGGCGATGGAGATCAATAGTTCAATTTCGTGCCCTTCAACTCCTTGTTGGATCTCCGAGAGGCCGTTCCTCACTGACCGCTTCCATCAGCTTCCTCCTCCTCATCTTCTCTTCACTCTTTACTTTAACCTCCTCCTCCTCCTCCTTTACTTTCCATTTGAATTTTCCGTTCAGTTTGTGCAGAAAACCAAATGGACGTCGCGTTTCGCCACCGATACCAAGGATTCCCATACGAACTGTTGGAGGTTTCAGAGGCTTATGTTTAAGCACAAGTTGTACCAGCTAAGGGAAGAGAGGGATATGAAGCCTGAGACTTTTGCTAGCCTCGTCTCAGCTATTATCTATTATCTACGAGAAAAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATCTGTACTATGGATTCAATGATACTTTGTTTGATCTCAATGTTTGGAAATGAAACTTCTTATAGGTGGGTATATGAAGGAGTCATTGATGATCCTTACGGAAAGCCTCAAGATTATGAAGCCAAGTATTGGAGGCAACGTTACAGCCTTAAGGATGGAAGTCCTAGCTTTCTTGCAAATATTGCTGGGACAATTTTAATCACTGGAAAATATCTAAATGTCATGAGAGAATGCGGGCAACATGTTCAGTATGATCTGATAGGGAAGCTACGATCTATAAAGCACTATCTTCTTCTTGATCAGGCTTCTCTGGTGCAAAGTACGTTGGAAGATCTTCAAGAATTTTTAGACAACATGAAAACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004386 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0031047 GO:0035194 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0098542 GO:0098586 GO:0140098

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

256

Amino Acids

30.11

Weight (kDa)

6.59

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	133 - 224	4.6e-13	Gamma tubulin complex component N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05460 AT1G05460
fragaria_vesca	FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972
malus_domestica	MD13G1196500.v1.1
prunus_persica	Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1
pyrus_communis	pycom13g16860
rosa_chinensis	RchiOBHm_Chr4g0415581
rosa_laevigata	RLG00000008062
rosa_multiflora	Rmu_sc0004599.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359390
rosa_rugosa	Rorug04G0134800 Rorug04G0134900 Rorug04G0135000 Rorug04G0135100 Rorug04G0135200 Rorug04G0135300
rosa_samantha	Rh4AG196200 Rh4BG194900 Rh4CG206900 Rh4DG193800
rosa_wichuraiana	Rw4G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	531
AccII	CGCG	1 cut(s)	205
AciI	CCGC	2 cut(s)	82, 636
AclI	AACGTT	1 cut(s)	541
AclWI	GGATC	2 cut(s)	62, 488
AcsI	RAATTY	2 cut(s)	164, 743
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	3 cut(s)	281, 409, 724
AfiI	CCNNNNNNNGG	2 cut(s)	289, 531
AflII	CTTAAG	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	5 cut(s)	27, 42, 164, 420, 740
AluBI	AGCT	5 cut(s)	94, 286, 338, 570, 670
AluI	AGCT	5 cut(s)	94, 286, 338, 570, 670
Alw26I	GTCTC	2 cut(s)	308, 337
AlwI	GGATC	2 cut(s)	62, 488
AoxI	GGCC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	164, 743
Asp700I	GAANNNNTTC	1 cut(s)	735
AsuNHI	GCTAGC	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	396
BccI	CCATC	3 cut(s)	4, 96, 551
BceAI	ACGGC	1 cut(s)	52
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	2 cut(s)	308, 337
BfaI	CTAG	2 cut(s)	324, 567
BfrI	CTTAAG	1 cut(s)	551
BglII	AGATCT	1 cut(s)	733
BmtI	GCTAGC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	495
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 531
Bse1I	ACTGG	1 cut(s)	610
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	562
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	289, 531
BseMII	CTCAG	2 cut(s)	303, 348
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	6 cut(s)	90, 93, 125, 128, 131, 134
BseSI	GKGCMC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	587
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	2 cut(s)	289, 531
BsmAI	GTCTC	2 cut(s)	308, 337
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	638
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	8 cut(s)	15, 54, 435, 493, 655, 674, 700, 733
BspACI	CCGC	2 cut(s)	82, 636
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	2 cut(s)	304, 347
BspFNI	CGCG	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	624
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	62, 488
BspTI	CTTAAG	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	8 cut(s)	15, 54, 435, 493, 655, 674, 700, 733
BssNI	GRCGYC	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	2 cut(s)	119, 288
BstACI	GRCGYC	1 cut(s)	200
BstAFI	CTTAAG	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	325, 638
BstDEI	CTNAG	3 cut(s)	287, 312, 334
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	205
BstKTI	GATC	8 cut(s)	18, 57, 438, 496, 658, 677, 703, 736
BstMAI	GTCTC	2 cut(s)	308, 337
BstMBI	GATC	8 cut(s)	15, 54, 435, 493, 655, 674, 700, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	647
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	2 cut(s)	54, 733
BstYI	RGATCY	2 cut(s)	54, 733
BsuRI	GGCC	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	75, 603
Cac8I	GCNNGC	2 cut(s)	325, 638
CciI	TCATGA	1 cut(s)	624
Csp6I	GTAC	3 cut(s)	280, 408, 723
CviAII	CATG	3 cut(s)	625, 644, 757
CviQI	GTAC	3 cut(s)	280, 408, 723
DdeI	CTNAG	3 cut(s)	287, 312, 334
DpnI	GATC	8 cut(s)	17, 56, 437, 495, 657, 676, 702, 735
DpnII	GATC	8 cut(s)	15, 54, 435, 493, 655, 674, 700, 733
Eam1104I	CTCTTC	2 cut(s)	119, 288
EarI	CTCTTC	2 cut(s)	119, 288
Eco130I	CCWWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	3 cut(s)	628, 647, 760
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	3 cut(s)	624, 643, 756
FauI	CCCGC	1 cut(s)	629
FbaI	TGATCA	1 cut(s)	700
FokI	GGATG	1 cut(s)	569
FspBI	CTAG	2 cut(s)	324, 567
GsaI	CCCAGC	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	628, 647, 760
HinfI	GANTC	3 cut(s)	227, 416, 483
Hpy188I	TCNGA	3 cut(s)	61, 255, 660
Hpy188III	TCNNGA	4 cut(s)	512, 625, 698, 740
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	48, 473
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	3 cut(s)	200, 541, 725
HpyCH4V	TGCA	3 cut(s)	184, 578, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	3 cut(s)	287, 312, 334
HpySE526I	ACGT	3 cut(s)	200, 541, 725
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	628, 647, 760
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	8 cut(s)	15, 54, 435, 493, 655, 674, 700, 733
LpnPI	CCDG	8 cut(s)	296, 324, 360, 378, 573, 591, 689, 698
MaeI	CTAG	2 cut(s)	324, 567
MaeII	ACGT	3 cut(s)	200, 541, 725
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	8 cut(s)	17, 56, 437, 495, 657, 676, 702, 735
MboI	GATC	8 cut(s)	15, 54, 435, 493, 655, 674, 700, 733
MboII	GAAGA	8 cut(s)	101, 106, 305, 401, 683, 686, 728, 743
MflI	RGATCY	2 cut(s)	54, 733
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	4 cut(s)	27, 164, 594, 743
MlyI	GAGTC	1 cut(s)	492
MmeI	TCCRAC	3 cut(s)	32, 224, 708
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	4 cut(s)	129, 267, 552, 599
MspCI	CTTAAG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	638
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	584
NdeII	GATC	8 cut(s)	15, 54, 435, 493, 655, 674, 700, 733
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	3 cut(s)	628, 647, 760
NspI	RCATGY	1 cut(s)	647
PagI	TCATGA	1 cut(s)	624
PciI	ACATGT	1 cut(s)	643
PctI	GAATGC	1 cut(s)	638
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	227, 416
PflMI	CCANNNNNTGG	1 cut(s)	531
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
PscI	ACATGT	1 cut(s)	643
Psp1406I	AACGTT	1 cut(s)	541
PspFI	CCCAGC	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	54, 733
RsaI	GTAC	3 cut(s)	281, 409, 724
RsaNI	GTAC	3 cut(s)	280, 408, 723
SaqAI	TTAA	4 cut(s)	129, 267, 552, 599
Sau3AI	GATC	8 cut(s)	15, 54, 435, 493, 655, 674, 700, 733
SchI	GAGTC	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	510, 551
SmoI	CTYRAG	2 cut(s)	510, 551
Sse9I	AATT	4 cut(s)	27, 164, 594, 743
SsiI	CCGC	2 cut(s)	82, 636
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	2 cut(s)	324, 567
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	3 cut(s)	203, 544, 728
TasI	AATT	4 cut(s)	27, 164, 594, 743
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	227, 416
Tru1I	TTAA	4 cut(s)	129, 267, 552, 599
Tru9I	TTAA	4 cut(s)	129, 267, 552, 599
TscAI	CASTG	2 cut(s)	82, 610
TspDTI	ATGAA	6 cut(s)	320, 391, 402, 468, 492, 534
TspGWI	ACGGA	2 cut(s)	160, 516
TspRI	CASTG	2 cut(s)	82, 610
Van91I	CCANNNNNTGG	1 cut(s)	531
Vha464I	CTTAAG	1 cut(s)	551
XapI	RAATTY	2 cut(s)	164, 743
XceI	RCATGY	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	2 cut(s)	324, 567
ZraI	GACGTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.