Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004411

Physical Location & Seq

Genomic Coordinates Forward (+)

21736832 .. 21741665

Gene Structure 4834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0134800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAACCATGTCAAGAATTTGATATCAAACACGTCTTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATCCCGGATTCGTTCCTGCCGAACACCCAAAATAATAGCCTCCGTAGTCGCCGCCGCTCTCCACCTCCAACGCCGTCGCTCTCCACCACCTACACCCTCTTTGGAAAGACTTAAGTCTACGACGGAAAATCTTTGCCGTAGTAACTTTAACTTGGGTTTCTGTCTTCGTCCAAACTCAGGTTCCAAGGGCCTGAGGATCCACGACAACCCTGCTCTCGAGCACGCCTCCAAGGCCTCCAATTTCCTCTACCCGGTCTTCTTCATCGATCAGCACTGCATGAATCCCGACCCGAACGCACCCTCGGCCGGGTCCTCCAAGGCCGGCCTGAACCGAATCTGGCGCTTATTAGAGTCAAGGGAAGAATTTGCTGATCTTAGAGCCAAGGGTTGCGAGCTTCTGGCATCAGCTTTGTTTCACAACTGGAAATCACTGAGCAAGAGGAAAAAATCAAACAATAGCTTCATCTGTTCACTGTCAAAGATAAATGAAGCTACAGGTTTCCAAATATATCTTGCATTGGCATTGTACAAACCAAGACCCATGAGGGCTGAAAGAGGCAATGAGTTGCATAATGGGAAGTTGATTGTGCAGAATTGGGGATTTCGGAGTTGGCCTGATGGGATTCAGTCAATGGCTATCCCACTAAGAGTTAATCTTTATACTGATAAGGCTTCAATGCTGGATGAAGCAGTTGAGTATTTGAAGCAGCTCCAACTTCAAGTACAGAGGGGAGAAAGGAAGAAACAGAAGAAGGGGGAGACGGGAAGGACAAAAGAGGCAGGGAAATCCAAAAGACGAGAAGAACTGCTCTACTTCACAGATTCAAGGATATGTCTGCTGGAACAAGGAACAACCCACATTAACAAGTTTTGGGCCAAAAGCCAAGATAGTGGCAGCATGCCAGCATCCATTCATTTTATGATGTCGGTGCTAATCCACTTGACAAACGAGTATCAATATCAAAATCTGACAAGAGGAGGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004386 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0031047 GO:0035194 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0098542 GO:0098586 GO:0140098

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

354

Amino Acids

40.16

Weight (kDa)

9.93

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_photolyase	PF00875	88 - 159	5.4e-09	DNA photolyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05460 AT1G05460
fragaria_vesca	FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972
malus_domestica	MD13G1196500.v1.1
prunus_persica	Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1
pyrus_communis	pycom13g16860
rosa_chinensis	RchiOBHm_Chr4g0415581
rosa_laevigata	RLG00000008062
rosa_multiflora	Rmu_sc0004599.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359390
rosa_rugosa	Rorug04G0134800 Rorug04G0134900 Rorug04G0135000 Rorug04G0135100 Rorug04G0135200 Rorug04G0135300
rosa_samantha	Rh4AG196200 Rh4BG194900 Rh4CG206900 Rh4DG193800
rosa_wichuraiana	Rw4G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	194
AciI	CCGC	2 cut(s)	129, 132
AclWI	GGATC	2 cut(s)	268, 281
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	2 cut(s)	16, 440
AfaI	GTAC	2 cut(s)	605, 801
AfiI	CCNNNNNNNGG	4 cut(s)	254, 328, 383, 384
AflII	CTTAAG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	4 cut(s)	753, 781, 797, 903
AjiI	CACGTC	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	5 cut(s)	472, 485, 537, 569, 787
AluI	AGCT	5 cut(s)	472, 485, 537, 569, 787
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	830
AlwI	GGATC	2 cut(s)	268, 281
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	7 cut(s)	265, 309, 381, 396, 400, 689, 951
ApeKI	GCWGC	2 cut(s)	784, 972
ApoI	RAATTY	2 cut(s)	16, 440
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	3 cut(s)	265, 387, 951
AsuC2I	CCSGG	3 cut(s)	82, 329, 385
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	387
AxyI	CCTNAGG	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	273
BbsI	GAAGAC	3 cut(s)	27, 233, 325
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	796, 984
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	2 cut(s)	135, 198
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BcnI	CCSGG	3 cut(s)	82, 329, 385
BcoDI	GTCTC	1 cut(s)	830
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	421
BfrI	CTTAAG	1 cut(s)	188
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	4 cut(s)	129, 132, 785, 973
BlsI	GCNGC	4 cut(s)	130, 133, 786, 974
Bme1390I	CCNGG	3 cut(s)	82, 329, 385
Bme18I	GGWCC	1 cut(s)	387
BmeT110I	CYCGRG	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	3 cut(s)	265, 387, 951
BmiI	GGNNCC	3 cut(s)	259, 275, 388
BmrFI	CCNGG	3 cut(s)	82, 329, 385
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	488, 992
BmuI	ACTGGG	1 cut(s)	64
BoxI	GACNNNNGTC	1 cut(s)	190
BpiI	GAAGAC	3 cut(s)	27, 233, 325
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpuMI	CCSGG	3 cut(s)	82, 329, 385
Bsa29I	ATCGAT	1 cut(s)	342
BsaJI	CCNNGG	5 cut(s)	261, 306, 378, 393, 459
Bsc4I	CCNNNNNNNGG	4 cut(s)	254, 328, 383, 384
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	2 cut(s)	70, 503
Bse21I	CCTNAGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	643
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	5 cut(s)	261, 306, 378, 393, 459
BseGI	GGATG	3 cut(s)	77, 766, 983
BseLI	CCNNNNNNNGG	4 cut(s)	254, 328, 383, 384
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	3 cut(s)	260, 267, 500
BseNI	ACTGG	2 cut(s)	70, 503
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	796, 984
BsgI	GTGCAG	1 cut(s)	686
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	7 cut(s)	267, 311, 383, 398, 402, 691, 953
BshVI	ATCGAT	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	4 cut(s)	82, 329, 384, 399
BslI	CCNNNNNNNGG	4 cut(s)	254, 328, 383, 384
BsmAI	GTCTC	1 cut(s)	830
BsmBI	CGTCTC	1 cut(s)	830
BsnI	GGCC	7 cut(s)	267, 311, 383, 398, 402, 691, 953
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	273, 343, 448
BspACI	CCGC	2 cut(s)	129, 132
BspANI	GGCC	7 cut(s)	267, 311, 383, 398, 402, 691, 953
BspCNI	CTCAG	3 cut(s)	261, 266, 501
BspDI	ATCGAT	1 cut(s)	342
BspLI	GGNNCC	3 cut(s)	259, 275, 388
BspPI	GGATC	2 cut(s)	268, 281
BspTI	CTTAAG	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	643
BsrFI	RCCGGY	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	70, 503
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	5 cut(s)	261, 306, 378, 393, 459
BssMI	GATC	3 cut(s)	273, 343, 448
BssT1I	CCWWGG	4 cut(s)	261, 306, 393, 459
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	5 cut(s)	300, 400, 470, 977, 981
BstDEI	CTNAG	5 cut(s)	253, 269, 452, 509, 722
BstF5I	GGATG	3 cut(s)	77, 766, 983
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	276, 346, 451
BstMAI	GTCTC	1 cut(s)	830
BstMBI	GATC	3 cut(s)	273, 343, 448
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 380
BstNSI	RCATGY	1 cut(s)	979
BstPAI	GACNNNNGTC	1 cut(s)	190
BstSCI	CCNGG	3 cut(s)	80, 327, 383
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	796, 984
BstV2I	GAAGAC	3 cut(s)	27, 233, 325
BstX2I	RGATCY	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	968
BstYI	RGATCY	1 cut(s)	273
BstZI	CGGCCG	1 cut(s)	381
Bsu15I	ATCGAT	1 cut(s)	342
Bsu36I	CCTNAGG	1 cut(s)	269
BsuRI	GGCC	7 cut(s)	267, 311, 383, 398, 402, 691, 953
BsuTUI	ATCGAT	1 cut(s)	342
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	77, 766, 983
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	3 cut(s)	349, 506, 548
Cac8I	GCNNGC	5 cut(s)	300, 400, 470, 977, 981
CfoI	GCGC	1 cut(s)	420
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	265, 387, 951
ClaI	ATCGAT	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	604, 800
CviAII	CATG	4 cut(s)	8, 355, 619, 976
CviQI	GTAC	2 cut(s)	604, 800
DdeI	CTNAG	5 cut(s)	253, 269, 452, 509, 722
DpnI	GATC	3 cut(s)	275, 345, 450
DpnII	GATC	3 cut(s)	273, 343, 448
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	381
Eco130I	CCWWGG	4 cut(s)	261, 306, 393, 459
Eco147I	AGGCCT	1 cut(s)	311
Eco32I	GATATC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	387
Eco52I	CGGCCG	1 cut(s)	381
Eco81I	CCTNAGG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	293
EcoO109I	RGGNCCY	2 cut(s)	265, 387
EcoRV	GATATC	1 cut(s)	24
EcoT14I	CCWWGG	4 cut(s)	261, 306, 393, 459
ErhI	CCWWGG	4 cut(s)	261, 306, 393, 459
Esp3I	CGTCTC	1 cut(s)	830
FaeI	CATG	4 cut(s)	11, 358, 622, 979
FaiI	YATR	9 cut(s)	9, 356, 586, 620, 648, 738, 910, 977, 998
FatI	CATG	4 cut(s)	7, 354, 618, 975
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	129, 132, 785, 973
FokI	GGATG	3 cut(s)	64, 773, 970
FseI	GGCCGGCC	1 cut(s)	402
Fsp4HI	GCNGC	4 cut(s)	129, 132, 785, 973
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	4 cut(s)	129, 132, 785, 973
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	7 cut(s)	267, 311, 383, 398, 402, 691, 953
HapII	CCGG	4 cut(s)	82, 329, 384, 399
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	4 cut(s)	11, 358, 622, 979
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HinfI	GANTC	6 cut(s)	85, 358, 411, 428, 700, 899
HpaII	CCGG	4 cut(s)	82, 329, 384, 399
Hpy166II	GTNNAC	2 cut(s)	195, 548
Hpy188I	TCNGA	2 cut(s)	684, 1047
Hpy188III	TCNNGA	3 cut(s)	13, 293, 362
Hpy8I	GTNNAC	2 cut(s)	195, 548
Hpy99I	CGWCG	2 cut(s)	156, 202
HpyAV	CCTTC	2 cut(s)	823, 837
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	5 cut(s)	63, 354, 593, 646, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 380
HpyF3I	CTNAG	5 cut(s)	253, 269, 452, 509, 722
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	11, 358, 622, 979
HspAI	GCGC	1 cut(s)	418
KroI	GCCGGC	1 cut(s)	398
KroNI	GCCGGC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	273, 343, 448
LmnI	GCTCC	1 cut(s)	792
Lsp1109I	GCAGC	2 cut(s)	796, 984
LweI	GCATC	2 cut(s)	488, 992
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	275, 345, 450
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	3 cut(s)	273, 343, 448
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	5 cut(s)	16, 58, 316, 440, 670
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	2 cut(s)	169, 814
MroNI	GCCGGC	1 cut(s)	398
MseI	TTAA	5 cut(s)	189, 225, 729, 939, 1063
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	4 cut(s)	82, 329, 384, 399
MspR9I	CCNGG	3 cut(s)	82, 329, 385
MwoI	GCNNNNNNNGC	2 cut(s)	308, 380
NaeI	GCCGGC	1 cut(s)	400
NciI	CCSGG	3 cut(s)	82, 329, 385
NdeII	GATC	3 cut(s)	273, 343, 448
NgoMIV	GCCGGC	1 cut(s)	398
NlaIII	CATG	4 cut(s)	11, 358, 622, 979
NlaIV	GGNNCC	3 cut(s)	259, 275, 388
NmeAIII	GCCGAG	1 cut(s)	359
NspI	RCATGY	1 cut(s)	979
PaeI	GCATGC	1 cut(s)	979
PaeR7I	CTCGAG	1 cut(s)	293
PceI	AGGCCT	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PdiI	GCCGGC	1 cut(s)	400
PfeI	GAWTC	5 cut(s)	85, 358, 411, 700, 899
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	130, 133, 786, 974
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PpuMI	RGGWCCY	1 cut(s)	387
PshAI	GACNNNNGTC	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	259, 275, 388
PspPI	GGNCC	3 cut(s)	265, 387, 951
PspPPI	RGGWCCY	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	273
RigI	GGCCGGCC	1 cut(s)	402
RsaI	GTAC	2 cut(s)	605, 801
RsaNI	GTAC	2 cut(s)	604, 800
SaqAI	TTAA	5 cut(s)	189, 225, 729, 939, 1063
SatI	GCNGC	4 cut(s)	129, 132, 785, 973
Sau3AI	GATC	3 cut(s)	273, 343, 448
Sau96I	GGNCC	3 cut(s)	265, 387, 951
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	82, 329, 385
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	2 cut(s)	488, 992
SfcI	CTRYAG	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	387
SlaI	CTCGAG	1 cut(s)	293
SmlI	CTYRAG	2 cut(s)	188, 293
SmoI	CTYRAG	2 cut(s)	188, 293
SphI	GCATGC	1 cut(s)	979
Sse9I	AATT	5 cut(s)	16, 58, 316, 440, 670
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	2 cut(s)	129, 132
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	80, 327, 383
StyI	CCWWGG	4 cut(s)	261, 306, 393, 459
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	294, 342
TasI	AATT	5 cut(s)	16, 58, 316, 440, 670
TatI	WGTACW	2 cut(s)	603, 799
TauI	GCSGC	2 cut(s)	131, 134
TfiI	GAWTC	5 cut(s)	85, 358, 411, 700, 899
Tru1I	TTAA	5 cut(s)	189, 225, 729, 939, 1063
Tru9I	TTAA	5 cut(s)	189, 225, 729, 939, 1063
TscAI	CASTG	3 cut(s)	356, 513, 555
TseI	GCWGC	2 cut(s)	784, 972
TspDTI	ATGAA	7 cut(s)	17, 328, 371, 529, 579, 777, 980
TspGWI	ACGGA	2 cut(s)	109, 215
TspRI	CASTG	3 cut(s)	356, 513, 555
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	387
XapI	RAATTY	2 cut(s)	16, 440
XceI	RCATGY	1 cut(s)	979
XhoI	CTCGAG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.