Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004411

Physical Location & Seq

Genomic Coordinates Forward (+)

38026624 .. 38031244

Gene Structure 4621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG193800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGAGTACAATTGGGGGTAAGTGGGATGATGATGAGTGCTCTGTCATTGGAGACAAAGGGGATATCGGGTTCATCGATTTCAAAGATGACAAATCAGTTTGTAGTTACAACCCAGCTGAAGAGGGTCCGATTGTTATTTCAGTCCCATTCCCTCTTGTGGGAGGAAAGCAAGGTCAAAAACCTCGATCAGTAGTTGTAGGAGAAACAGTTTCGGATAAAATAACAATTGAGAACACCACCCGTAAGCCAGTGGAGCTATGGGGTGTTAAAATTTATGCCTCAACTCCAGAGGACTCTTTCACACTTTCTCTGATGGAGCCTCCAAAGAAAGACTCTGGTGTAGAGGCCATTAGAGCCTTCCTCGAGTCTGCTTCCCTCGAGGACAGAGTGCTGCAACCAGGAGACACTTTGACTGTGTGGCTGTCTTGCAAGCCCAAGGAAATTGGTATGCACACCAGCGTTGTGCAGTTTGATTTCGAGGATAATCAGATTGAACGTGCTGTTTTTCTCTTGGCTGATGACAAAATCTCCCAATCTCTGGCCTCAACAAGACCATTCGAAAGACGCACTAAAAAGAAACCAATTGTTGTGGATTCCTATCATGTGGCTGTAAGCCCTAGTAGAAAAACAAAACGCCTACCCTACAAAAATAGGCTTCCGCGATATGACATTCCAAAGGAACTTAGGGATTACCTCTTGAGCGGGCACGATCCTGAATGTGTTACAGAAGGTCTTAAGAGGCGGAACTATGCTGATCACTTCAAGACTTTACTGATGATGGAGGAAATACAGTTAGAGGAAAGCATGAGAAGTTATGATATGGAATATGTTAGTTTGAGGAGGAGGGGATATCATTATTTGTCCCTTGAAGTCCCAGGGCTTGCTGAGAGAAGGCCTTCACTTGTCCAAGGGGATCATGTTTTCGCCAAGCTTTCTGAGTATGCAGATGACACAACACTTAATCCATATCAGGGTTTCATTCACCATGTAGAGGCTGATGAAGTTTACTTGAAGTTTGCGCAAGATTTTCACAGTGACCACAGAGACGGTAATCTTTATAATGTGCAATTCACATATAATCGAGTTTCCATGAGAAGGTTATATCAAGCGACTGATGCTGCTGCAGAGTTAGACAGAGGGTTCCTATTTCCATCTGAGTCCCCTCAAAGATGGATTAAAGCCCCAACACTGTACCCTATACCTTCTTGTAGACTTAATGAAGAGCAGATGCGTGCAGTTGAGATGATCCTTGGCTGCAAAGGAGGACCCAAAGGAGGACCACCTTATGTGATTCATGGACCTCCTGGCACAGGCAAGACAATGACAATAGTGGAAGCAATCCTCCAACTCTACAAAAGTCAACCAAAAGCTCGAGTTCTTGTTTGTGCACCTTCAAATAGTGCAGCAGACCACATCCTCGAGAAACTCCTCAATGAAAAGGCTGACGTAGTAGTTAAAGAACATGAAATATTCAGGCTTAATGCACCTACCCGTCCTTATGAAGATATCAAGCCTGATTATATTAAATTTTGCTCCTTCGAGGACAATATCTTCAACTGTCCTCCACCCAAAGCCCTCAGGCGCTATAGGATCATCATATCAACCTATATGAGTGCCGCTCTTCTTTATTTAGAAGGTATCGAAAAAGGCCACTTCTCTCATATTTTCTTGGATGAGGCAGGACAAGCTTCAGAACCAGAAACCATGATCCCAGTAGCTAGTCTGCATGATAGGAATACAGTTGTTGTTCTTGCTGGAGACCCTATGCAATTAGGGCCGATCATAAACTCCAAGAAAGCAGAAGATTACTATTTGGGGATATCATACTTGGAGAGGATGTTCGACTGTGAATTTTATAGAAATGAAGATTACAGTTACGTGACAAAGTTGGTTAGAAATTACAGATGTCACCCAGACATTTTGCATCTCCCCAATGAGTTATTCTATGGAGGAGAGTTGATTGCTTGTAAAGATGACTCAGTTTCCATCATTACAATGCTGGACTTTCTTCCGAATAAGGACTTCCCCGTGGTTTTCTTTGGCATTCAAGGTTGTGATGAGAGGGAAGGAAACAATCCATCATGGTTTAACCGGACTGAAGCTAGTAAGGTAGTGGAGGTCACTAAGAGATTGACTGCAGGAAAGAACCTGAGTGAAGAAGATATTGGGGTCATAACTCCTTACCGACAGCAAGTGCTCAAAGTGAAGAAAGCTTTTGAAGATTTGGACATGCCTGACATCAAGGTTGGAAGTGTCGAGCAGTTTCAGGGACAGGAGAGGGAAGTTATCATAATATCAACTGTGCGATCAACAATCAAGCACAATGAATTTGACAGAACATACTGTTTGGGATTTCTGAGCAATCCAAAACGGTTTAATGTGGCTATTACTCGTGCCAAATCTTTGCTGATTATAATTGGGAACCCACATATTATCAGCAAGGATCCCAACTGGAATAAGCTTCTGTGGCGCTGTGTAGACAACAATTCCTATCAGGGTTGTAATCTCCCTGTCAGGCAGGAGGAATTTTCTTATGAGAACCCAACACAGGTAGATAACTGGGACAACAGTGAAGAAAACGCTCAGTTCTCTAGAACTGATTCATGGGTTCAAGGATCGTGGGACGCAGAAGCTCCGCAACCTATCGAGAACGGAGATGGAGCTGAACAGTGGCTGGAAACAGAAGTTCCTCAGCCTGTCGTTGATGAATCTGAATGGTCTGATGGCTGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004386 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0031047 GO:0035194 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0098542 GO:0098586 GO:0140098

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

911

Amino Acids

103.86

Weight (kDa)

5.3

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOV-10_beta-barrel	PF21634	272 - 357	3.4e-31	Helicase MOV-10, beta-barrel domain
ResIII	PF04851	403 - 567	1.4e-08	Type III restriction enzyme, res subunit
AAA_11	PF13086	405 - 498	4.3e-20	AAA domain
AAA_30	PF13604	405 - 596	2.5e-12	AAA domain
AAA_19	PF13245	428 - 592	2.3e-08	AAA domain
AAA_11	PF13086	524 - 598	9.3e-13	AAA domain
AAA_12	PF13087	608 - 809	7.7e-50	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05460 AT1G05460
fragaria_vesca	FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972
malus_domestica	MD13G1196500.v1.1
prunus_persica	Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1
pyrus_communis	pycom13g16860
rosa_chinensis	RchiOBHm_Chr4g0415581
rosa_laevigata	RLG00000008062
rosa_multiflora	Rmu_sc0004599.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359390
rosa_rugosa	Rorug04G0134800 Rorug04G0134900 Rorug04G0135000 Rorug04G0135100 Rorug04G0135200 Rorug04G0135300
rosa_samantha	Rh4AG196200 Rh4BG194900 Rh4CG206900 Rh4DG193800
rosa_wichuraiana	Rw4G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1059, 2414
AbsI	CCTCGAGG	1 cut(s)	377
Acc16I	TGCGCA	1 cut(s)	1020
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccBSI	CCGCTC	2 cut(s)	702, 1619
AccI	GTMKAC	2 cut(s)	1210, 2478
AccII	CGCG	1 cut(s)	661
AciI	CCGC	5 cut(s)	659, 702, 742, 1617, 2636
AclWI	GGATC	8 cut(s)	704, 921, 1240, 1598, 1702, 2438, 2451, 2623
AcsI	RAATTY	5 cut(s)	270, 1526, 1850, 2327, 2525
AcuI	CTGAAG	3 cut(s)	138, 1674, 2118
AfaI	GTAC	2 cut(s)	7, 1193
AfiI	CCNNNNNNNGG	9 cut(s)	157, 158, 538, 971, 991, 1095, 1274, 1310, 2548
AflII	CTTAAG	1 cut(s)	734
AjnI	CCWGG	3 cut(s)	397, 874, 1303
AjuI	GAANNNNNNNTTGG	4 cut(s)	1925, 1957, 2148, 2180
AloI	GAACNNNNNNTCC	4 cut(s)	53, 85, 1823, 1855
Alw21I	GWGCWC	3 cut(s)	41, 1390, 2199
Alw26I	GTCTC	4 cut(s)	45, 396, 1038, 1752
Alw44I	GTGCAC	1 cut(s)	1386
AlwI	GGATC	8 cut(s)	704, 921, 1240, 1598, 1702, 2438, 2451, 2623
AlwNI	CAGNNNCTG	1 cut(s)	2674
Ama87I	CYCGRG	4 cut(s)	362, 377, 1371, 1418
AoxI	GGCC	5 cut(s)	345, 540, 893, 1648, 1775
ApaLI	GTGCAC	1 cut(s)	1386
ApeKI	GCWGC	5 cut(s)	391, 1118, 1121, 1254, 1403
ApoI	RAATTY	5 cut(s)	270, 1526, 1850, 2327, 2525
Asp700I	GAANNNNTTC	2 cut(s)	895, 2599
AspLEI	GCGC	3 cut(s)	1021, 1584, 2472
AspS9I	GGNCC	5 cut(s)	125, 1265, 1277, 1298, 1775
AsuHPI	GGTGA	2 cut(s)	974, 1901
AsuII	TTCGAA	1 cut(s)	558
AvaI	CYCGRG	4 cut(s)	362, 377, 1371, 1418
AvaII	GGWCC	4 cut(s)	125, 1265, 1277, 1298
AxyI	CCTNAGG	1 cut(s)	1577
BaeGI	GKGCMC	2 cut(s)	708, 1390
BamHI	GGATCC	1 cut(s)	2443
BauI	CACGAG	1 cut(s)	2391
Bbv12I	GWGCWC	3 cut(s)	41, 1390, 2199
BbvCI	CCTCAGC	1 cut(s)	2691
BbvI	GCAGC	5 cut(s)	378, 1105, 1108, 1241, 1415
BccI	CCATC	8 cut(s)	307, 772, 1159, 1164, 1994, 2086, 2651, 2717
BciT130I	CCWGG	3 cut(s)	399, 876, 1305
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	4 cut(s)	45, 396, 1038, 1752
BfaI	CTAG	4 cut(s)	618, 1719, 2103, 2592
BfmI	CTRYAG	3 cut(s)	1122, 1585, 2136
BfoI	RGCGCY	2 cut(s)	1585, 2473
BfrI	CTTAAG	1 cut(s)	734
BisI	GCNGC	6 cut(s)	392, 1119, 1122, 1255, 1404, 1617
BlsI	GCNGC	6 cut(s)	393, 1120, 1123, 1256, 1405, 1618
Bme1390I	CCNGG	3 cut(s)	399, 876, 1305
Bme18I	GGWCC	4 cut(s)	125, 1265, 1277, 1298
BmeT110I	CYCGRG	4 cut(s)	362, 377, 1371, 1418
BmgT120I	GGNCC	5 cut(s)	125, 1265, 1277, 1298, 1775
BmiI	GGNNCC	6 cut(s)	126, 318, 1142, 1267, 2423, 2445
BmrFI	CCNGG	3 cut(s)	399, 876, 1305
BmrI	ACTGGG	2 cut(s)	1706, 2569
BmsI	GCATC	3 cut(s)	1105, 1218, 1933
BmuI	ACTGGG	2 cut(s)	1706, 2569
BplI	GAGNNNNNCTC	4 cut(s)	345, 377, 1603, 1635
BpmI	CTGGAG	2 cut(s)	270, 1776
Bpu10I	CCTNAGC	1 cut(s)	2691
Bpu14I	TTCGAA	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	718
Bsa29I	ATCGAT	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	1879
BsaBI	GATNNNNATC	1 cut(s)	597
BsaI	GGTCTC	1 cut(s)	1752
BsaJI	CCNNGG	6 cut(s)	435, 874, 875, 907, 1249, 2028
BsaWI	WCCGGW	1 cut(s)	2091
BsaXI	ACNNNNNCTCC	6 cut(s)	192, 222, 512, 542, 1823, 1853
Bsc4I	CCNNNNNNNGG	9 cut(s)	157, 158, 538, 971, 991, 1095, 1274, 1310, 2548
Bse1I	ACTGG	4 cut(s)	248, 1712, 2456, 2564
Bse21I	CCTNAGG	1 cut(s)	1577
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	3 cut(s)	399, 876, 1305
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	6 cut(s)	435, 874, 875, 907, 1249, 2028
BseGI	GGATG	4 cut(s)	31, 1413, 1678, 1842
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	9 cut(s)	157, 158, 538, 971, 991, 1095, 1274, 1310, 2548
BseMII	CTCAG	9 cut(s)	876, 927, 1146, 1591, 1992, 2141, 2348, 2597, 2705
BseNI	ACTGG	4 cut(s)	248, 1712, 2456, 2564
BseRI	GAGGAG	4 cut(s)	853, 856, 1418, 1965
BseSI	GKGCMC	2 cut(s)	708, 1390
BseXI	GCAGC	5 cut(s)	378, 1105, 1108, 1241, 1415
BseYI	CCCAGC	1 cut(s)	112
BsgI	GTGCAG	3 cut(s)	485, 1254, 1422
Bsh1236I	CGCG	1 cut(s)	661
BshFI	GGCC	5 cut(s)	347, 542, 895, 1650, 1777
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	3 cut(s)	41, 1390, 2199
BsiHKCI	CYCGRG	4 cut(s)	362, 377, 1371, 1418
BsiSI	CCGG	1 cut(s)	2092
BslFI	GGGAC	7 cut(s)	128, 847, 857, 1144, 2283, 2576, 2636
BslI	CCNNNNNNNGG	9 cut(s)	157, 158, 538, 971, 991, 1095, 1274, 1310, 2548
BsmAI	GTCTC	4 cut(s)	45, 396, 1038, 1752
BsmBI	CGTCTC	1 cut(s)	1038
BsmFI	GGGAC	7 cut(s)	128, 847, 857, 1144, 2283, 2576, 2636
BsmI	GAATGC	1 cut(s)	2043
BsnI	GGCC	5 cut(s)	347, 542, 895, 1650, 1777
Bso31I	GGTCTC	1 cut(s)	1752
BsoBI	CYCGRG	4 cut(s)	362, 377, 1371, 1418
Bsp119I	TTCGAA	1 cut(s)	558
Bsp1286I	GDGCHC	4 cut(s)	41, 708, 1390, 2199
BspACI	CCGC	5 cut(s)	659, 702, 742, 1617, 2636
BspANI	GGCC	5 cut(s)	347, 542, 895, 1650, 1777
BspCNI	CTCAG	9 cut(s)	877, 928, 1147, 1590, 1991, 2142, 2349, 2596, 2704
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	661
BspLI	GGNNCC	6 cut(s)	126, 318, 1142, 1267, 2423, 2445
BspMAI	CTGCAG	2 cut(s)	1126, 2140
BspPI	GGATC	8 cut(s)	704, 921, 1240, 1598, 1702, 2438, 2451, 2623
BspQI	GCTCTTC	2 cut(s)	1215, 1626
BspT104I	TTCGAA	1 cut(s)	558
BspTI	CTTAAG	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	1752
BsrBI	CCGCTC	2 cut(s)	702, 1619
BsrI	ACTGG	4 cut(s)	248, 1712, 2456, 2564
BssECI	CCNNGG	6 cut(s)	435, 874, 875, 907, 1249, 2028
BssSI	CACGAG	1 cut(s)	2391
BssT1I	CCWWGG	3 cut(s)	435, 907, 1249
Bst2BI	CACGAG	1 cut(s)	2391
Bst2UI	CCWGG	3 cut(s)	399, 876, 1305
Bst6I	CTCTTC	3 cut(s)	114, 1215, 1626
BstAFI	CTTAAG	1 cut(s)	734
BstBAI	YACGTR	1 cut(s)	1879
BstBI	TTCGAA	1 cut(s)	558
BstC8I	GCNNGC	4 cut(s)	431, 704, 882, 1233
BstDSI	CCRYGG	1 cut(s)	2028
BstENI	CCTNNNNNAGG	1 cut(s)	1308
BstF5I	GGATG	4 cut(s)	31, 1413, 1678, 1842
BstFNI	CGCG	1 cut(s)	661
BstH2I	RGCGCY	2 cut(s)	1585, 2473
BstHHI	GCGC	3 cut(s)	1021, 1584, 2472
BstMAI	GTCTC	4 cut(s)	45, 396, 1038, 1752
BstMWI	GCNNNNNNNGC	6 cut(s)	253, 353, 1115, 1685, 1774, 2467
BstNI	CCWGG	3 cut(s)	399, 876, 1305
BstNSI	RCATGY	1 cut(s)	2233
BstSCI	CCNGG	3 cut(s)	397, 874, 1303
BstSFI	CTRYAG	3 cut(s)	1122, 1585, 2136
BstSLI	GKGCMC	2 cut(s)	708, 1390
BstUI	CGCG	1 cut(s)	661
BstV1I	GCAGC	5 cut(s)	378, 1105, 1108, 1241, 1415
BstX2I	RGATCY	1 cut(s)	2443
BstYI	RGATCY	1 cut(s)	2443
Bsu15I	ATCGAT	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	1577
BsuRI	GGCC	5 cut(s)	347, 542, 895, 1650, 1777
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	2028
BtsCI	GGATG	4 cut(s)	31, 1413, 1678, 1842
BtsIMutI	CAGTG	5 cut(s)	255, 1039, 1187, 2575, 2675
Cac8I	GCNNGC	4 cut(s)	431, 704, 882, 1233
CaiI	CAGNNNCTG	1 cut(s)	2674
CfoI	GCGC	3 cut(s)	1021, 1584, 2472
Cfr13I	GGNCC	5 cut(s)	125, 1265, 1277, 1298, 1775
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	2 cut(s)	573, 2633
Csp6I	GTAC	2 cut(s)	6, 1192
CspCI	CAANNNNNGTGG	4 cut(s)	570, 605, 2600, 2635
CviQI	GTAC	2 cut(s)	6, 1192
Eam1104I	CTCTTC	3 cut(s)	114, 1215, 1626
EarI	CTCTTC	3 cut(s)	114, 1215, 1626
EciI	GGCGGA	1 cut(s)	757
Eco130I	CCWWGG	3 cut(s)	435, 907, 1249
Eco147I	AGGCCT	1 cut(s)	895
Eco31I	GGTCTC	1 cut(s)	1752
Eco32I	GATATC	4 cut(s)	64, 851, 1507, 1821
Eco47I	GGWCC	4 cut(s)	125, 1265, 1277, 1298
Eco57I	CTGAAG	3 cut(s)	138, 1674, 2118
Eco81I	CCTNAGG	1 cut(s)	1577
Eco88I	CYCGRG	4 cut(s)	362, 377, 1371, 1418
EcoNI	CCTNNNNNAGG	1 cut(s)	1308
EcoO109I	RGGNCCY	1 cut(s)	1265
EcoRII	CCWGG	3 cut(s)	397, 874, 1303
EcoRV	GATATC	4 cut(s)	64, 851, 1507, 1821
EcoT14I	CCWWGG	3 cut(s)	435, 907, 1249
ErhI	CCWWGG	3 cut(s)	435, 907, 1249
Esp3I	CGTCTC	1 cut(s)	1038
FaqI	GGGAC	7 cut(s)	128, 847, 857, 1144, 2283, 2576, 2636
FauI	CCCGC	1 cut(s)	695
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	2 cut(s)	1210, 2478
Fnu4HI	GCNGC	6 cut(s)	392, 1119, 1122, 1255, 1404, 1617
FokI	GGATG	4 cut(s)	38, 1400, 1685, 1849
Fsp4HI	GCNGC	6 cut(s)	392, 1119, 1122, 1255, 1404, 1617
FspBI	CTAG	4 cut(s)	618, 1719, 2103, 2592
FspI	TGCGCA	1 cut(s)	1020
GlaI	GCGC	3 cut(s)	1020, 1583, 2471
GluI	GCNGC	6 cut(s)	392, 1119, 1122, 1255, 1404, 1617
GsaI	CCCAGC	1 cut(s)	116
GsuI	CTGGAG	2 cut(s)	270, 1776
HaeII	RGCGCY	2 cut(s)	1585, 2473
HaeIII	GGCC	5 cut(s)	347, 542, 895, 1650, 1777
HapII	CCGG	1 cut(s)	2092
HgaI	GACGC	2 cut(s)	573, 2633
HhaI	GCGC	3 cut(s)	1021, 1584, 2472
Hin6I	GCGC	3 cut(s)	1019, 1582, 2470
HinP1I	GCGC	3 cut(s)	1019, 1582, 2470
HincII	GTYRAC	1 cut(s)	1361
HindII	GTYRAC	1 cut(s)	1361
HindIII	AAGCTT	4 cut(s)	929, 1686, 2211, 2459
HinfI	GANTC	9 cut(s)	293, 332, 365, 593, 1157, 1291, 1976, 2600, 2708
HpaII	CCGG	1 cut(s)	2092
HphI	GGTGA	2 cut(s)	974, 1901
Hpy166II	GTNNAC	5 cut(s)	1006, 1211, 1361, 1388, 2479
Hpy188III	TCNNGA	7 cut(s)	287, 697, 713, 763, 1420, 2592, 2647
Hpy8I	GTNNAC	5 cut(s)	1006, 1211, 1361, 1388, 2479
HpyCH4IV	ACGT	3 cut(s)	496, 1446, 1878
HpyF10VI	GCNNNNNNNGC	6 cut(s)	253, 353, 1115, 1685, 1774, 2467
HpySE526I	ACGT	3 cut(s)	496, 1446, 1878
HspAI	GCGC	3 cut(s)	1019, 1582, 2470
Ksp22I	TGATCA	1 cut(s)	754
LguI	GCTCTTC	2 cut(s)	1215, 1626
LmnI	GCTCC	5 cut(s)	253, 316, 1538, 2638, 2660
Lsp1109I	GCAGC	5 cut(s)	378, 1105, 1108, 1241, 1415
LweI	GCATC	3 cut(s)	1105, 1218, 1933
MaeI	CTAG	4 cut(s)	618, 1719, 2103, 2592
MaeII	ACGT	3 cut(s)	496, 1446, 1878
MaeIII	GTNAC	7 cut(s)	104, 721, 1034, 1874, 1879, 1907, 2119
MbiI	CCGCTC	2 cut(s)	702, 1619
MfeI	CAATTG	3 cut(s)	9, 225, 582
MflI	RGATCY	1 cut(s)	2443
MhlI	GDGCHC	4 cut(s)	41, 708, 1390, 2199
MlyI	GAGTC	5 cut(s)	287, 326, 374, 1166, 1970
MmeI	TCCRAC	2 cut(s)	1369, 2227
MroXI	GAANNNNTTC	2 cut(s)	895, 2599
MslI	CAYNNNNRTG	1 cut(s)	1994
MspA1I	CMGCKG	1 cut(s)	116
MspCI	CTTAAG	1 cut(s)	734
MspI	CCGG	1 cut(s)	2092
MspR9I	CCNGG	3 cut(s)	399, 876, 1305
MunI	CAATTG	3 cut(s)	9, 225, 582
Mva1269I	GAATGC	1 cut(s)	2043
MvaI	CCWGG	3 cut(s)	399, 876, 1305
MvnI	CGCG	1 cut(s)	661
MwoI	GCNNNNNNNGC	6 cut(s)	253, 353, 1115, 1685, 1774, 2467
NlaIV	GGNNCC	6 cut(s)	126, 318, 1142, 1267, 2423, 2445
NmuCI	GTSAC	4 cut(s)	1034, 1879, 1907, 2119
NsbI	TGCGCA	1 cut(s)	1020
NspI	RCATGY	1 cut(s)	2233
NspV	TTCGAA	1 cut(s)	558
PaeR7I	CTCGAG	4 cut(s)	362, 377, 1371, 1418
PasI	CCCWGGG	1 cut(s)	875
PceI	AGGCCT	1 cut(s)	895
PciSI	GCTCTTC	2 cut(s)	1215, 1626
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	2043
PdmI	GAANNNNTTC	2 cut(s)	895, 2599
PfeI	GAWTC	4 cut(s)	593, 1291, 2600, 2708
PflMI	CCANNNNNTGG	1 cut(s)	538
PkrI	GCNGC	6 cut(s)	393, 1120, 1123, 1256, 1405, 1618
PleI	GAGTC	5 cut(s)	287, 326, 373, 1165, 1970
PpsI	GAGTC	5 cut(s)	287, 326, 373, 1165, 1970
Ppu21I	YACGTR	1 cut(s)	1879
PpuMI	RGGWCCY	1 cut(s)	1265
PsiI	TTATAA	2 cut(s)	1059, 2414
Psp5II	RGGWCCY	1 cut(s)	1265
Psp6I	CCWGG	3 cut(s)	397, 874, 1303
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	3 cut(s)	397, 874, 1303
PspN4I	GGNNCC	6 cut(s)	126, 318, 1142, 1267, 2423, 2445
PspPI	GGNCC	5 cut(s)	125, 1265, 1277, 1298, 1775
PspPPI	RGGWCCY	1 cut(s)	1265
PspXI	VCTCGAGB	3 cut(s)	362, 377, 1371
PstI	CTGCAG	2 cut(s)	1126, 2140
PstNI	CAGNNNCTG	1 cut(s)	2674
PsuI	RGATCY	1 cut(s)	2443
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	7, 1193
RsaNI	GTAC	2 cut(s)	6, 1192
RseI	CAYNNNNRTG	1 cut(s)	1994
SapI	GCTCTTC	2 cut(s)	1215, 1626
SatI	GCNGC	6 cut(s)	392, 1119, 1122, 1255, 1404, 1617
Sau96I	GGNCC	5 cut(s)	125, 1265, 1277, 1298, 1775
SchI	GAGTC	5 cut(s)	287, 326, 374, 1166, 1970
ScrFI	CCNGG	3 cut(s)	399, 876, 1305
SduI	GDGCHC	4 cut(s)	41, 708, 1390, 2199
SfaNI	GCATC	3 cut(s)	1105, 1218, 1933
SfcI	CTRYAG	3 cut(s)	1122, 1585, 2136
Sfr274I	CTCGAG	4 cut(s)	362, 377, 1371, 1418
SfuI	TTCGAA	1 cut(s)	558
SinI	GGWCC	4 cut(s)	125, 1265, 1277, 1298
SlaI	CTCGAG	4 cut(s)	362, 377, 1371, 1418
SmiMI	CAYNNNNRTG	1 cut(s)	1994
SmlI	CTYRAG	6 cut(s)	362, 377, 697, 734, 1371, 1418
SmoI	CTYRAG	6 cut(s)	362, 377, 697, 734, 1371, 1418
SseBI	AGGCCT	1 cut(s)	895
SsiI	CCGC	5 cut(s)	659, 702, 742, 1617, 2636
SspI	AATATT	1 cut(s)	1470
SspMI	CTAG	4 cut(s)	618, 1719, 2103, 2592
StuI	AGGCCT	1 cut(s)	895
StyD4I	CCNGG	3 cut(s)	397, 874, 1303
StyI	CCWWGG	3 cut(s)	435, 907, 1249
TaiI	ACGT	3 cut(s)	499, 1449, 1881
TatI	WGTACW	1 cut(s)	5
TauI	GCSGC	1 cut(s)	1619
TfiI	GAWTC	4 cut(s)	593, 1291, 2600, 2708
TscAI	CASTG	5 cut(s)	255, 1039, 1194, 2575, 2675
TseFI	GTSAC	4 cut(s)	1034, 1879, 1907, 2119
TseI	GCWGC	5 cut(s)	391, 1118, 1121, 1254, 1403
Tsp45I	GTSAC	4 cut(s)	1034, 1879, 1907, 2119
TspGWI	ACGGA	1 cut(s)	2667
TspRI	CASTG	5 cut(s)	255, 1039, 1194, 2575, 2675
Van91I	CCANNNNNTGG	1 cut(s)	538
Vha464I	CTTAAG	1 cut(s)	734
VneI	GTGCAC	1 cut(s)	1386
VpaK11BI	GGWCC	4 cut(s)	125, 1265, 1277, 1298
XagI	CCTNNNNNAGG	1 cut(s)	1308
XapI	RAATTY	5 cut(s)	270, 1526, 1850, 2327, 2525
XbaI	TCTAGA	1 cut(s)	2591
XceI	RCATGY	1 cut(s)	2233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XhoI	CTCGAG	4 cut(s)	362, 377, 1371, 1418
XmiI	GTMKAC	2 cut(s)	1210, 2478
XmnI	GAANNNNTTC	2 cut(s)	895, 2599
XspI	CTAG	4 cut(s)	618, 1719, 2103, 2592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.