Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004411

Physical Location & Seq

Genomic Coordinates Reverse (-)

21791650 .. 21792006

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0135000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTATTCGAGCTGTGGGGAGTTGGTTTCTGCTGCAAAGTTATTTGAACATATGCCTGTCAAGAATGTGGTGAGCTATAATGCTTTTACAACAGGGCTTTTGCAGAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACATTGTTTTCAGTTCTTTCTGCTTGTGCTAGTGTTTTGTATCTCCAATTTGGTAGGCAGGTGCATGGTTTGATCATGAAAGATGATGGTATCGGCATTGGAGTTCGGATGCAGTGGAGGAGGGCATGCGTTGGATCGATTTGGCTTTTAGGCTTGGGAGATCTGAGAGAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004386 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0031047 GO:0035194 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0098542 GO:0098586 GO:0140098

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

118

Amino Acids

13.05

Weight (kDa)

9.5

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	21 - 70	2.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05460 AT1G05460
fragaria_vesca	FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972
malus_domestica	MD13G1196500.v1.1
prunus_persica	Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1
pyrus_communis	pycom13g16860
rosa_chinensis	RchiOBHm_Chr4g0415581
rosa_laevigata	RLG00000008062
rosa_multiflora	Rmu_sc0004599.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359390
rosa_rugosa	Rorug04G0134800 Rorug04G0134900 Rorug04G0135000 Rorug04G0135100 Rorug04G0135200 Rorug04G0135300
rosa_samantha	Rh4AG196200 Rh4BG194900 Rh4CG206900 Rh4DG193800
rosa_wichuraiana	Rw4G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	229
Acc36I	ACCTGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	47
AluBI	AGCT	2 cut(s)	12, 75
AluI	AGCT	2 cut(s)	12, 75
AlwI	GGATC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	82, 173
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	260
BclI	TGATCA	1 cut(s)	252
BfaI	CTAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	136, 294
BseMII	CTCAG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	19
BshVI	ATCGAT	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	252, 314, 340
BspCNI	CTCAG	1 cut(s)	336
BspDI	ATCGAT	1 cut(s)	317
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	252, 314, 340
BssT1I	CCWWGG	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	136, 294
BstKTI	GATC	3 cut(s)	255, 317, 343
BstMBI	GATC	3 cut(s)	252, 314, 340
BstNSI	RCATGY	2 cut(s)	156, 309
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu15I	ATCGAT	1 cut(s)	317
BsuTUI	ATCGAT	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	136, 294
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	2 cut(s)	183, 299
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	307
CciI	TCATGA	1 cut(s)	255
ClaI	ATCGAT	1 cut(s)	317
CviAII	CATG	4 cut(s)	153, 245, 256, 306
CviJI	RGCY	5 cut(s)	12, 75, 97, 325, 333
CviKI_1	RGCY	5 cut(s)	12, 75, 97, 325, 333
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	3 cut(s)	254, 316, 342
DpnII	GATC	3 cut(s)	252, 314, 340
Eco130I	CCWWGG	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	4 cut(s)	156, 248, 259, 309
FaiI	YATR	7 cut(s)	51, 53, 78, 154, 246, 257, 307
FatI	CATG	4 cut(s)	152, 244, 255, 305
FauNDI	CATATG	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	143, 301
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	156, 248, 259, 309
HphI	GGTGA	2 cut(s)	82, 173
Hpy188I	TCNGA	3 cut(s)	171, 288, 345
Hpy188III	TCNNGA	2 cut(s)	61, 256
HpyCH4V	TGCA	4 cut(s)	35, 103, 244, 292
HpyF3I	CTNAG	1 cut(s)	344
Hsp92II	CATG	4 cut(s)	156, 248, 259, 309
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	252, 314, 340
LpnPI	CCDG	3 cut(s)	69, 78, 224
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	254, 316, 342
MboI	GATC	3 cut(s)	252, 314, 340
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	2 cut(s)	172, 227
MmeI	TCCRAC	2 cut(s)	108, 292
MnlI	CCTC	4 cut(s)	152, 291, 294, 345
MseI	TTAA	1 cut(s)	138
NdeI	CATATG	1 cut(s)	51
NdeII	GATC	3 cut(s)	252, 314, 340
NlaIII	CATG	4 cut(s)	156, 248, 259, 309
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	2 cut(s)	156, 309
PaeI	GCATGC	1 cut(s)	309
PagI	TCATGA	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	252, 314, 340
SetI	ASST	5 cut(s)	14, 77, 163, 243, 356
SfaNI	GCATC	1 cut(s)	279
SphI	GCATGC	1 cut(s)	309
Sse9I	AATT	2 cut(s)	172, 227
SspMI	CTAG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	116
TaqI	TCGA	2 cut(s)	8, 317
TasI	AATT	2 cut(s)	172, 227
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	183, 299
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	2 cut(s)	183, 299
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	2 cut(s)	156, 309
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.