Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004411

Physical Location & Seq

Genomic Coordinates Reverse (-)

21792052 .. 21792405

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0135100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCAAGCTCCGATCAGCCCCTCAAGTCCAAATGGTACGTCCACACCCATCTCCTCAAAACCGGGTTCTTCTCCGACGTCTACACAGCCACCGCTCTCACGGACGCTTCCATGAAGCTCAACCTCGTGGACAATGCACTCAAGGTGTTCGATGAAATGCCTCACCGAAACTTGGCTCCCGTAAACACTGTGATTTCCGGGTTGTTGCATAATGGACATCGGAGAGAGGCTTTAAAGGTGTTCAAGAGCGTTGGTTTTGGAGGGTTCGGGTTGAATTCGGTTACTATAGCTAGTGTGCTTTCGGCGTGTGACAATGCAAAGCAGGGGATGGGAATGCATTGCGTGGCGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004386 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0031047 GO:0035194 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0098542 GO:0098586 GO:0140098

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

117

Amino Acids

12.67

Weight (kDa)

9.03

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05460 AT1G05460
fragaria_vesca	FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972
malus_domestica	MD13G1196500.v1.1
prunus_persica	Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1
pyrus_communis	pycom13g16860
rosa_chinensis	RchiOBHm_Chr4g0415581
rosa_laevigata	RLG00000008062
rosa_multiflora	Rmu_sc0004599.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359390
rosa_rugosa	Rorug04G0134800 Rorug04G0134900 Rorug04G0135000 Rorug04G0135100 Rorug04G0135200 Rorug04G0135300
rosa_samantha	Rh4AG196200 Rh4BG194900 Rh4CG206900 Rh4DG193800
rosa_wichuraiana	Rw4G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	2 cut(s)	93, 347
AcsI	RAATTY	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	244, 274
AluBI	AGCT	3 cut(s)	9, 118, 290
AluI	AGCT	3 cut(s)	9, 118, 290
ApoI	RAATTY	1 cut(s)	274
ArsI	GACNNNNNNTTYG	2 cut(s)	24, 56
AsuC2I	CCSGG	2 cut(s)	64, 199
AsuHPI	GGTGA	1 cut(s)	155
BauI	CACGAG	1 cut(s)	125
BccI	CCATC	2 cut(s)	57, 322
BcnI	CCSGG	2 cut(s)	64, 199
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	64, 199
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	64, 199
BpuEI	CTTGAG	2 cut(s)	8, 125
BpuMI	CCSGG	2 cut(s)	64, 199
BsaHI	GRCGYC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	63, 198
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	2 cut(s)	93, 347
BspLI	GGNNCC	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	337
BssMI	GATC	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	333
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	62, 197
BstSFI	CTRYAG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	186
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	7 cut(s)	9, 19, 89, 118, 176, 230, 290
CviKI_1	RGCY	7 cut(s)	9, 19, 89, 118, 176, 230, 290
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraI	TTTAAA	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	339
FaeI	CATG	1 cut(s)	115
FaiI	YATR	3 cut(s)	113, 210, 287
FatI	CATG	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	81
FokI	GGATG	1 cut(s)	340
FspBI	CTAG	1 cut(s)	291
HapII	CCGG	2 cut(s)	63, 198
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	115
HpaII	CCGG	2 cut(s)	63, 198
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	4 cut(s)	43, 82, 130, 184
Hpy188I	TCNGA	3 cut(s)	13, 76, 222
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	4 cut(s)	43, 82, 130, 184
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	2 cut(s)	39, 78
HpyCH4V	TGCA	4 cut(s)	137, 208, 317, 337
HpySE526I	ACGT	2 cut(s)	39, 78
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	14, 181
LpnPI	CCDG	3 cut(s)	76, 211, 308
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	39, 78
MaeIII	GTNAC	2 cut(s)	280, 308
MalI	GATC	1 cut(s)	15
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	61
MluCI	AATT	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	6 cut(s)	32, 65, 134, 171, 220, 254
Mph1103I	ATGCAT	1 cut(s)	339
MseI	TTAA	1 cut(s)	233
MspI	CCGG	2 cut(s)	63, 198
MspR9I	CCNGG	2 cut(s)	64, 199
Mva1269I	GAATGC	1 cut(s)	339
NciI	CCSGG	2 cut(s)	64, 199
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	339
PctI	GAATGC	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	177
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	64, 199
SetI	ASST	8 cut(s)	11, 42, 81, 120, 126, 147, 240, 292
SfcI	CTRYAG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	23, 140
SmoI	CTYRAG	2 cut(s)	23, 140
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	2 cut(s)	93, 347
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	62, 197
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	2 cut(s)	42, 81
TaqI	TCGA	1 cut(s)	150
TasI	AATT	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	128, 168
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.